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1OUW
Biol. Unit 2
Info
Asym.Unit (111 KB)
Biol.Unit 1 (54 KB)
Biol.Unit 2 (54 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CALYSTEGIA SEPIUM AGGLUTININ
Authors
:
Y. Bourne, V. Roig-Zamboni, A. Barre, W. J. Peumans, C. H. Astoul, E. J. M Damme, P. Rouge
Date
:
25 Mar 03 (Deposition) - 11 Nov 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.37
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Beta-Prism Fold, Agglutinin, Lectin, Mannose-Binding, Jacalin- Related, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Bourne, V. Roig-Zamboni, A. Barre, W. J. Peumans, C. H. Astoul, E. J. M. Van Damme, P. Rouge
The Crystal Structure Of The Calystegia Sepium Agglutinin Reveals A Novel Quaternary Arrangement Of Lectin Subunits With A Beta-Prism Fold
J. Biol. Chem. V. 279 527 2004
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: N-ACETYLALANINE (AYAa)
1b: N-ACETYLALANINE (AYAb)
1c: N-ACETYLALANINE (AYAc)
1d: N-ACETYLALANINE (AYAd)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
3a: IMIDAZOLE (IMDa)
3b: IMIDAZOLE (IMDb)
3c: IMIDAZOLE (IMDc)
3d: IMIDAZOLE (IMDd)
4a: MALATE ION (MLTa)
4b: MALATE ION (MLTb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AYA
2
Mod. Amino Acid
N-ACETYLALANINE
2
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
3
IMD
-1
Ligand/Ion
IMIDAZOLE
4
MLT
2
Ligand/Ion
MALATE ION
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC4 (SOFTWARE)
4: AC5 (SOFTWARE)
5: AC8 (SOFTWARE)
6: BC1 (SOFTWARE)
7: BC2 (SOFTWARE)
8: BC3 (SOFTWARE)
9: BC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:109 , GLY D:91 , ILE D:92 , ARG D:100 , VAL D:118 , GLY D:119 , HOH D:653 , HOH D:846 , HOH D:847 , HOH D:885 , HOH D:1121 , HOH D:1166
BINDING SITE FOR RESIDUE MLT D 501
2
AC2
SOFTWARE
LYS B:109 , GLY C:91 , ILE C:92 , ARG C:100 , VAL C:118 , GLY C:119 , HOH C:683 , HOH C:830 , HOH C:942 , HOH C:1062 , HOH C:1122 , HOH C:1138
BINDING SITE FOR RESIDUE MLT C 502
3
AC4
SOFTWARE
PRO B:66 , TYR B:141 , HOH B:739 , ASN C:96 , GLY C:140 , TYR C:141 , TYR C:142 , ASP C:144
BINDING SITE FOR RESIDUE EDO C 511
4
AC5
SOFTWARE
PRO A:66 , TYR A:141 , EDO A:515 , ASN D:96 , GLY D:140 , TYR D:141 , TYR D:142 , ASP D:144
BINDING SITE FOR RESIDUE EDO D 512
5
AC8
SOFTWARE
GLY A:64 , GLY A:65 , PRO A:66 , ASN D:96 , TYR D:141 , EDO D:512
BINDING SITE FOR RESIDUE EDO A 515
6
BC1
SOFTWARE
ILE C:8 , SER C:55 , LYS C:56 , MET D:5 , HOH D:1036 , HOH D:1085
BINDING SITE FOR RESIDUE EDO D 517
7
BC2
SOFTWARE
TRP C:12 , GLY C:13 , THR C:72 , MET C:74 , HOH C:832 , HOH C:1176 , AYA D:2
BINDING SITE FOR RESIDUE EDO C 518
8
BC3
SOFTWARE
TYR B:141 , TYR B:142 , EDO B:513 , ASN C:15 , GLY C:17 , HOH C:1098
BINDING SITE FOR RESIDUE IMD B 520
9
BC6
SOFTWARE
ASN A:96 , TYR A:141 , EDO A:510 , ASN D:15 , GLY D:17
BINDING SITE FOR RESIDUE IMD A 523
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1ouwa_ (A:)
1b: SCOP_d1ouwb_ (B:)
1c: SCOP_d1ouwc_ (C:)
1d: SCOP_d1ouwd_ (D:)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Prism I
(50)
Superfamily
:
Mannose-binding lectins
(42)
Family
:
Mannose-binding lectins
(32)
Protein domain
:
Calystegia sepium agglutinin
(1)
Hedge bindweed (Calystegia sepium) [TaxId: 47519]
(1)
1a
d1ouwa_
A:
1b
d1ouwb_
B:
1c
d1ouwc_
C:
1d
d1ouwd_
D:
[
close SCOP info
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1ouwA00 (A:3-152)
1b: CATH_1ouwB00 (B:3-153)
1c: CATH_1ouwD00 (D:3-153)
1d: CATH_1ouwC00 (C:3-153)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Aligned Prism
(39)
Topology
:
Vitelline Membrane Outer Layer Protein I, subunit A
(39)
Homologous Superfamily
:
[code=2.100.10.30, no name defined]
(33)
Hedge bindweed (Calystegia sepium)
(1)
1a
1ouwA00
A:3-152
1b
1ouwB00
B:3-153
1c
1ouwD00
D:3-153
1d
1ouwC00
C:3-153
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Jacalin_1ouwD01 (D:17-152)
1b: PFAM_Jacalin_1ouwD02 (D:17-152)
1c: PFAM_Jacalin_1ouwD03 (D:17-152)
1d: PFAM_Jacalin_1ouwD04 (D:17-152)
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Clans
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)
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)
Clan
:
no clan defined [family: Jacalin]
(35)
Family
:
Jacalin
(35)
Calystegia sepium (Hedge bindweed) (Convolvulus sepium)
(1)
1a
Jacalin-1ouwD01
D:17-152
1b
Jacalin-1ouwD02
D:17-152
1c
Jacalin-1ouwD03
D:17-152
1d
Jacalin-1ouwD04
D:17-152
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Show PDB file:
Asym.Unit (111 KB)
Header - Asym.Unit
Biol.Unit 1 (54 KB)
Header - Biol.Unit 1
Biol.Unit 2 (54 KB)
Header - Biol.Unit 2
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