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(-) Description

Title :  SOLUTION STRUCTURE OF CU(II)-COPC FROM PSEUDOMONAS SYRINGAE
 
Authors :  F. Arnesano, L. Banci, I. Bertini, I. C. Felli, C. Luchinat, A. R. Thompsett, Structural Proteomics In Europe (Spine)
Date :  21 Mar 03  (Deposition) - 08 Jul 03  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (35x)
Keywords :  Copper Trafficking, Paramagnetic Proteins, Type Ii Copper(Ii), Structural Proteomics In Europe, Spine, Structural Genomics, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Arnesano, L. Banci, I. Bertini, I. C. Felli, C. Luchinat, A. R. Thompsett
A Strategy For The Nmr Characterization Of Type Ii Copper(Ii) Proteins: The Case Of The Copper Trafficking Protein Copc From Pseudomonas Syringae.
J. Am. Chem. Soc. V. 125 7200 2003
PubMed-ID: 12797793  |  Reference-DOI: 10.1021/JA034112C
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - COPPER RESISTANCE PROTEIN C
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET20B
    Expression System Strain: BL21(DE3)PLYS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: COPC
    Organism Scientific: PSEUDOMONAS SYRINGAE
    Organism Taxid: 317

 Structural Features

(-) Chains, Units

  
NMR Structure (35x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1CU1Ligand/IonCOPPER (II) ION

(-) Sites  (0, 0)

(no "Site" information available for 1OT4)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1OT4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1OT4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1OT4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1OT4)

(-) Exons   (0, 0)

(no "Exon" information available for 1OT4)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:102
 aligned with COPC_PSEUB | P12376 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:102
                                    34        44        54        64        74        84        94       104       114       124  
           COPC_PSEUB    25 HPKLVSSTPAEGSEGAAPAKIELHFSENLVTQFSGAKLVMTAMPGMEHSPMAVKAAVSGGGDPKTMVITPASPLTAGTYKVDWRAVSSDTHPITGSVTFKVK 126
               SCOP domains d1ot4a_ A: Copper resistance protein C (CopC, PcoC)                                                    SCOP domains
               CATH domains 1ot4A00 A:1-102  [code=2.60.40.1220, no name defined]                                                  CATH domains
               Pfam domains CopC-1ot4A01 A:1-102                                                                                   Pfam domains
         Sec.struct. author .....eee............eeee..........eeeee...............eeeee.....eeeeee......eeeeeeeee.......eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 1ot4 A   1 HPKLVSSTPAEGSEGAAPAKIELHFSENLVTQFSGAKLVMTAMPGMEHSPMAVKAAVSGGGDPKTMVITPASPLTAGTYKVDWRAVSSDTHPITGSVTFKVK 102
                                    10        20        30        40        50        60        70        80        90       100  


Chain A from PDB  Type:PROTEIN  Length:102
 aligned with Q4ZWC7_PSEU2 | Q4ZWC7 from UniProtKB/TrEMBL  Length:126

    Alignment length:102
                                    34        44        54        64        74        84        94       104       114       124  
         Q4ZWC7_PSEU2    25 HPKLVSSTPAEGSEGAAPGKIELHFSENLVTQFSGAKLVMTAMPGMEHSPMGVKTAVSGGGDPKTMIITPASPLTAGTYKVDWRAVSSDTHPITGSVTFKVK 126
               SCOP domains d1ot4a_ A: Copper resistance protein C (CopC, PcoC)                                                    SCOP domains
               CATH domains 1ot4A00 A:1-102  [code=2.60.40.1220, no name defined]                                                  CATH domains
               Pfam domains CopC-1ot4A01 A:1-102                                                                                   Pfam domains
         Sec.struct. author .....eee............eeee..........eeeee...............eeeee.....eeeeee......eeeeeeeee.......eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 1ot4 A   1 HPKLVSSTPAEGSEGAAPAKIELHFSENLVTQFSGAKLVMTAMPGMEHSPMAVKAAVSGGGDPKTMVITPASPLTAGTYKVDWRAVSSDTHPITGSVTFKVK 102
                                    10        20        30        40        50        60        70        80        90       100
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: E-set (290)

(-) Gene Ontology  (4, 7)

NMR Structure(hide GO term definitions)
Chain A   (COPC_PSEUB | P12376)
molecular function
    GO:0005507    copper ion binding    Interacting selectively and non-covalently with copper (Cu) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0046688    response to copper ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus.
cellular component
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Chain A   (Q4ZWC7_PSEU2 | Q4ZWC7)
molecular function
    GO:0005507    copper ion binding    Interacting selectively and non-covalently with copper (Cu) ions.
biological process
    GO:0046688    response to copper ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus.
cellular component
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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  COPC_PSEUB | P12376
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        COPC_PSEUB | P12376: 1m42 1nm4 2c9p 2c9q 2c9r
UniProtKB/TrEMBL
        Q4ZWC7_PSEU2 | Q4ZWC7: 1m42 1nm4

(-) Related Entries Specified in the PDB File

1m42 SOLUTION STRUCTURE OF APOCOPC FROM PSEUDOMONAS SYRINGAE
1nm4 SOLUTION STRUCTURE OF CU(I)-COPC FROM PSEUDOMONAS SYRINGAE RELATED ID: CIRMMP01 RELATED DB: TARGETDB