1ONF - JenaLib

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Biol. Unit 1 - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM GLUTATHIONE REDUCTASE

Authors :   G. N. Sarma, S. N. Savvides, K. Becker, M. Schirmer, R. H. Schirmer, P. A.

Date :   27 Feb 03 (Deposition) - 06 May 03 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.60

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. N. Sarma, S. N. Savvides, K. Becker, M. Schirmer, R. H. Schirmer, P. A. Karplus
Glutathione Reductase Of The Malarial Parasite Plasmodium Falciparum: Crystal Structure And Inhibitor Development
J. Mol. Biol. V. 328 893 2003
PubMed-ID: 12729762 | Reference-DOI: 10.1016/S0022-2836(03)00347-4

Molecule 1 - GLUTATHIONE REDUCTASE
	Chains	:	A
	EC Number	:	1.8.1.7
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET22B+
	Expression System Strain	:	SG5(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	GR2
	Organism Common	:	MALARIA PARASITE P. FALCIPARUM
	Organism Scientific	:	PLASMODIUM FALCIPARUM
	Organism Taxid	:	5833
	Synonym	:	GR, GRASE

		1
Asymmetric Unit	:	A
Biological Unit 1 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 1)

No.	Name	Count	Type	Full Name
1	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE

Asymmetric Unit (1, 1)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:8 , GLY A:9 , GLY A:10 , SER A:11 , GLY A:12 , GLU A:31 , LYS A:32 , THR A:38 , CYS A:39 , VAL A:42 , GLY A:43 , CYS A:44 , LYS A:47 , GLY A:108 , THR A:109 , ALA A:110 , ALA A:147 , VAL A:148 , GLY A:149 , SER A:166 , TYR A:185 , ARG A:272 , ASP A:275 , GLY A:310 , ASP A:311 , GLN A:351 , LEU A:352 , THR A:353 , PRO A:354 , HIS A:484	BINDING SITE FOR RESIDUE FAD A 500

Asymmetric Unit

No.	Residues
1	A:39	-	A:44

Asymmetric Unit

No.	Residues
1	His A:387	-	Pro A:388
2	His A:484	-	Pro A:485

(no "SAP(SNP)/Variant" information available for 1ONF)

Asymmetric Unit (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PYRIDINE_REDOX_1	PS00076	Pyridine nucleotide-disulphide oxidoreductases class-I active site.	GSHR_PLAFK	37-47	1	A:36-46

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PYRIDINE_REDOX_1	PS00076	Pyridine nucleotide-disulphide oxidoreductases class-I active site.	GSHR_PLAFK	37-47	2	A:36-46

(no "Exon" information available for 1ONF)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:439
 aligned with GSHR_PLAFK | Q94655 from UniProtKB/Swiss-Prot  Length:500

    Alignment length:495
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491     
           GSHR_PLAFK     2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPVKGIENTISSDEFFNIKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKTRKTNYKLIPTVIFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIGLNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFLTLQ 496
               SCOP domains d1onfa1 A:1-153,A:271-376 Glutathione reductase                                                                                                          d1onfa2 A:154-270 Glutathione reductase                                                                              d1onfa1 A:1-153,A:271-376 Glutathione reductas                              e                             d1onfa3 A:377-495 Glutathione reductase                                                                                 SCOP domains
               CATH domains 1onfA01 A:1-152,A:271-378  [code=3.50.50.60, no name defined]                                                                                           1onfA02 A:153-270  [code=3.50.50.60, no name defined]                                                                 1onfA01 A:1-152,A:271-378  [code=3.50.50.60, n                              o name defined]                 1onfA03 A:379-493  [code=3.30.390.30, no name defined]                                                             -- CATH domains
           Pfam domains (1) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Pyr_redox-1onfA01 A:177-257                                                      --------------------------------------------------------------------------------------------------------------------------Pyr_redox_dim-1onfA03 A:380-495                                                                                      Pfam domains (1)
           Pfam domains (2) --Pyr_redox_2-1onfA02 A:3-316                                                                                                                                                                                                                                                                                                                             ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
         Sec.struct. author ...eeee..hhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee......--------------------------....eee............hhhhheehhhhh......eeeee..hhhhhhhhhhhhh...eeeee..........hhhhhhhhhhhhhhh..eee....eeeeee.....eeeee....eeeee.eeee........................eee..........eee....eee.------------------------------.....hhhhhhhhhhhhhhhhhh............eee.....eeeee.hhhhhhhhhhhh.eeeeeeee.hhhhh....hhhhh..eeeeeeee....eeeeeeee..hhhhhhhhhhhhhhh..hhhhhhh.........hhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------PYRIDINE_RE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1onf A   1 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFL--------------------------EGRNILIAVGNKPVFPPVKGIENTISSDEFFNIKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDENQRTSVNNIYAVGDCCMVK------------------------------FYNVQLTPVAINAGRLLADRLFLKKTRKTNYKLIPTVIFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIGLNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFLTLQ 495
                                    10        20        30        40        50        60        70        80        90       100       110  |      -         -       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310     |   -         -         -      |350       360       370       380       390       400       410       420       430       440       450       460       470       480       490     
                                                                                                                                          113                        140                                                                                                                                                                             316                            347

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Enolase-like; domain 1 (252)

Homologous Superfamily: [code=3.30.390.30, no name defined] (99)

Malaria parasite p (Plasmodium falciparum) (1)

1onfA03

A:379-493

Architecture: 3-Layer(bba) Sandwich (528)

Topology: FAD/NAD(P)-binding domain (373)

Homologous Superfamily: [code=3.50.50.60, no name defined] (373)

Malaria parasite p (Plasmodium falciparum) (1)

2a	1onfA01	A:1-152,A:271-378
2b	1onfA02	A:153-270

Asymmetric Unit(hide GO term definitions)

Chain A (GSHR_PLAFK | Q94655)

molecular function
	GO:0050660	flavin adenine dinucleotide binding	Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
	GO:0004362	glutathione-disulfide reductase activity	Catalysis of the reaction: 2 glutathione + NADP+ = glutathione disulfide + NADPH + H+.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016668	oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces NAD or NADP.
biological process
	GO:0045454	cell redox homeostasis	Any process that maintains the redox environment of a cell or compartment within a cell.
	GO:0098869	cellular oxidant detoxification	Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric Unit
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	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		His A:387 - Pro A:388	[ RasMol ]
		His A:484 - Pro A:485	[ RasMol ]

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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