1OKC - JenaLib

Title :   STRUCTURE OF MITOCHONDRIAL ADP/ATP CARRIER IN COMPLEX WITH CARBOXYATRACTYLOSIDE

Authors :   E. Pebay-Peyroula, C. Dahout-Gonzalez, R. Kahn, V. Trezeguet, G. J. -M. Lauquin, G. Brandolin

Date :   21 Jul 03 (Deposition) - 07 Nov 03 (Release) - 29 Jan 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym./Biol. Unit : A

Keywords :   Mitochondrial Transporter, Nucleotide Translocation, Membrane Protein, Carrier Protein, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. Pebay-Peyroula, C. Dahout-Gonzalez, R. Kahn, V. Trezeguet, G. J. -M. Lauquin, G. Brandolin
Structure Of Mitochondrial Adp/Atp Carrier In Complex With Carboxyatractyloside
Nature V. 426 39 2003
PubMed-ID: 14603310 | Reference-DOI: 10.1038/NATURE02056

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 10)

Sites (10, 10)

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:79 , ASN A:87 , LYS A:91 , GLY A:123 , LEU A:127 , GLY A:182 , ILE A:183 , ARG A:187 , SER A:227 , PHE A:230 , ASP A:231 , ARG A:234 , HOH A:2004 , HOH A:2038 , HOH A:2076 , HOH A:2077 , HOH A:2078 , HOH A:2079	BINDING SITE FOR RESIDUE CXT A 401
02	AC2	SOFTWARE	TRP A:70 , ARG A:71 , GLY A:72 , ASN A:73 , LEU A:74 , TRP A:109 , LEU A:140 , PC1 A:980 , HOH A:2024 , HOH A:2080	BINDING SITE FOR RESIDUE CDL A 800
03	AC3	SOFTWARE	ILE A:53 , ILE A:54 , PHE A:270 , GLY A:272 , ALA A:273 , TRP A:274 , SER A:275 , PC1 A:983 , HOH A:2083	BINDING SITE FOR RESIDUE CDL A 801
04	AC4	SOFTWARE	CYS A:128 , PHE A:176 , ASN A:177 , GLN A:181 , LEU A:289	BINDING SITE FOR RESIDUE CDL A 802
05	AC5	SOFTWARE	PRO A:266 , PHE A:269 , PHE A:270 , LDM A:904	BINDING SITE FOR RESIDUE LDM A 903
06	AC6	SOFTWARE	VAL A:226 , PRO A:229 , PHE A:230 , TRP A:257 , LDM A:903	BINDING SITE FOR RESIDUE LDM A 904
07	AC7	SOFTWARE	LEU A:74 , PHE A:108 , TRP A:109 , THR A:154 , GLY A:155 , LEU A:156 , GLY A:157 , ASN A:158 , GLY A:192 , ASP A:195 , THR A:196 , CDL A:800	BINDING SITE FOR RESIDUE PC1 A 980
08	AC8	SOFTWARE	LYS A:106 , GLN A:107 , PHE A:108 , TRP A:109 , ARG A:110 , ALA A:113 , PC1 A:982	BINDING SITE FOR RESIDUE PC1 A 981
09	AC9	SOFTWARE	PHE A:66 , LEU A:67 , ARG A:110 , ALA A:113 , PC1 A:981 , HOH A:2082	BINDING SITE FOR RESIDUE PC1 A 982
10	BC1	SOFTWARE	CDL A:801 , HOH A:2083	BINDING SITE FOR RESIDUE PC1 A 983

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 3)

Exons (4, 4)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:292
 aligned with ADT1_BOVIN | P02722 from UniProtKB/Swiss-Prot  Length:298

    Alignment length:292
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292  
           ADT1_BOVIN     3 DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEI 294
               SCOP domains d1okca_ A: ADP,ATP carrier protein                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1okcA00 A:2-293 Mitochondrial carrier domain                                                                                                                                                                                                                                                         CATH domains
           Pfam domains (1) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Mito_carr-1okcA01 A:205-293                                                               Pfam domains (1)
           Pfam domains (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Mito_carr-1okcA02 A:205-293                                                               Pfam domains (2)
           Pfam domains (3) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Mito_carr-1okcA03 A:205-293                                                               Pfam domains (3)
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh..hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---SOLCAR  PDB: A:5-97 UniProt: 6-98                                                            ------------SOLCAR  PDB: A:110-200 UniProt: 111-201                                                    ----------SOLCAR  PDB: A:211-293 UniProt: 212-297                                             PROSITE
           Transcript 1 (1) Exon 1.1  PDB: A:2-36 UniProt: 1-37Exon 1.2  PDB: A:37-199 UniProt: 38-200                                                                                                                            ----------------------------------------------Exon 1.4  PDB: A:246-293 UniProt: 247-298        Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.3  PDB: A:199-246 UniProt: 200-247       ----------------------------------------------- Transcript 1 (2)
                 1okc A   2 DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEI 293
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (1, 3)

Gene Ontology (13, 13)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (ADT1_BOVIN | P02722)

molecular function
	GO:0003735	structural constituent of ribosome	The action of a molecule that contributes to the structural integrity of the ribosome.
	GO:0005215	transporter activity	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
biological process
	GO:0008637	apoptotic mitochondrial changes	The morphological and physiological alterations undergone by mitochondria during apoptosis.
	GO:0060546	negative regulation of necroptotic process	Any process that decreases the rate, frequency or extent of a necroptotic process, a necrotic cell death process that results from the activation of endogenous cellular processes, such as signaling involving death domain receptors or Toll-like receptors.
	GO:0006412	translation	The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
	GO:0055085	transmembrane transport	The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005743	mitochondrial inner membrane	The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0043209	myelin sheath	An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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