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(-) Description

Title :  CRYSTAL STRUCTURE OF SULA FROM PSEUDOMONAS AERUGINOSA
 
Authors :  S. C. Cordell, E. J. H. Robinson, J. Lowe
Date :  21 Apr 03  (Deposition) - 19 Jun 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Bacterial Cell Division Inhibitor, Ftsz, Sula Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. C. Cordell, E. J. H. Robinson, J. Lowe
Crystal Structure Of The Sos Cell Division Inhibitor Sula And In Complex With Ftsz
Proc. Natl. Acad. Sci. Usa V. 100 7889 2003
PubMed-ID: 12808143  |  Reference-DOI: 10.1073/PNAS.1330742100

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN PA3008
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PHIS17
    Expression System Taxid: 562
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287
    Synonym: SULA

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1OFT)

(-) Sites  (0, 0)

(no "Site" information available for 1OFT)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1OFT)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Glu A:134 -Pro A:135
2Glu B:134 -Pro B:135
3Glu C:134 -Pro C:135
4Glu D:134 -Pro D:135

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1OFT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1OFT)

(-) Exons   (0, 0)

(no "Exon" information available for 1OFT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:119
 aligned with SULA_PSEAE | Q9HZJ8 from UniProtKB/Swiss-Prot  Length:161

    Alignment length:119
                                    52        62        72        82        92       102       112       122       132       142       152         
           SULA_PSEAE    43 PAAFSELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARKQLSRAAQLGQAQSLNIRLG 161
               SCOP domains d1ofta_ A: Hypothetical protein PA3008                                                                                  SCOP domains
               CATH domains 1oftA00 A:43-161 P-loop containing nucleotide triphosphate hydrolases                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee.hhhhhhhhhhhhhhhhhh.....eeeee......hhhhhhhh..hhh.eeee.....hhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhh..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 1oft A  43 PAAFSELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARKQLSRAAQLGQAQSLNIRLG 161
                                    52        62        72        82        92       102       112       122       132       142       152         


Chain B from PDB  Type:PROTEIN  Length:119
 aligned with SULA_PSEAE | Q9HZJ8 from UniProtKB/Swiss-Prot  Length:161

    Alignment length:119
                                    52        62        72        82        92       102       112       122       132       142       152         
           SULA_PSEAE    43 PAAFSELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARKQLSRAAQLGQAQSLNIRLG 161
               SCOP domains d1oftb_ B: Hypothetical protein PA3008                                                                                  SCOP domains
               CATH domains 1oftB00 B:43-161 P-loop containing nucleotide triphosphate hydrolases                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeehhhhhhhhhhhhhhhhhh.....eeeee......hhhhhhhhh.hhh.eeee.....hhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhhhhh..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 1oft B  43 PAAFSELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARKQLSRAAQLGQAQSLNIRLG 161
                                    52        62        72        82        92       102       112       122       132       142       152         


Chain C from PDB  Type:PROTEIN  Length:119
 aligned with SULA_PSEAE | Q9HZJ8 from UniProtKB/Swiss-Prot  Length:161

    Alignment length:119
                                    52        62        72        82        92       102       112       122       132       142       152         
           SULA_PSEAE    43 PAAFSELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARKQLSRAAQLGQAQSLNIRLG 161
               SCOP domains d1oftc_ C: Hypothetical protein PA3008                                                                                  SCOP domains
               CATH domains 1oftC00 C:43-161 P-loop containing nucleotide triphosphate hydrolases                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeehhhhhhhhhhhhhhhhhh.....eeeee......hhhhhhhh......eeee.....hhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhhhhh..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 1oft C  43 PAAFSELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARKQLSRAAQLGQAQSLNIRLG 161
                                    52        62        72        82        92       102       112       122       132       142       152         


Chain D from PDB  Type:PROTEIN  Length:119
 aligned with SULA_PSEAE | Q9HZJ8 from UniProtKB/Swiss-Prot  Length:161

    Alignment length:119
                                    52        62        72        82        92       102       112       122       132       142       152         
           SULA_PSEAE    43 PAAFSELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARKQLSRAAQLGQAQSLNIRLG 161
               SCOP domains d1oftd_ D: Hypothetical protein PA3008                                                                                  SCOP domains
               CATH domains 1oftD00 D:43-161 P-loop containing nucleotide triphosphate hydrolases                                                   CATH domains
           Pfam domains (1) SulA-1oftD01 D:43-134                                                                       --------------------------- Pfam domains (1)
           Pfam domains (2) SulA-1oftD02 D:43-134                                                                       --------------------------- Pfam domains (2)
           Pfam domains (3) SulA-1oftD03 D:43-134                                                                       --------------------------- Pfam domains (3)
           Pfam domains (4) SulA-1oftD04 D:43-134                                                                       --------------------------- Pfam domains (4)
         Sec.struct. author ...eeeeeee.hhhhhhhhhhhhhhhhhh.....eeeee......hhhhhhhh..hhh.eeee.....hhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhhhhh..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 1oft D  43 PAAFSELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARKQLSRAAQLGQAQSLNIRLG 161
                                    52        62        72        82        92       102       112       122       132       142       152
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: SulA] (2)
(-)
Family: SulA (2)
(-)
Pseudomonas aeruginosa (2)
1aSulA-1oftD01D:43-134
1bSulA-1oftD02D:43-134
1cSulA-1oftD03D:43-134
1dSulA-1oftD04D:43-134

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (SULA_PSEAE | Q9HZJ8)
biological process
    GO:0006281    DNA repair    The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
    GO:0009432    SOS response    An error-prone process for repairing damaged microbial DNA.
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
    GO:0006974    cellular response to DNA damage stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
    GO:0051782    negative regulation of cell division    Any process that stops, prevents, or reduces the frequency, rate or extent of cell division.
cellular component
    GO:0009276    Gram-negative-bacterium-type cell wall    The peptidoglycan layer of the Gram-negative cell envelope. In Gram-negative cells the peptidoglycan is relatively thin (1-2nm) and is linked to the outer membrane by lipoproteins. In Gram-negative cells the peptidoglycan is too thin to retain the primary stain in the Gram staining procedure and therefore cells appear red after Gram stain.

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  Cis Peptide Bonds
    Glu A:134 - Pro A:135   [ RasMol ]  
    Glu B:134 - Pro B:135   [ RasMol ]  
    Glu C:134 - Pro C:135   [ RasMol ]  
    Glu D:134 - Pro D:135   [ RasMol ]  
 

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  1oft
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SULA_PSEAE | Q9HZJ8: 1ofu

(-) Related Entries Specified in the PDB File

1ofu CRYSTAL STRUCTURE OF SULA:FTSZ FROM PSEUDOMONAS AERUGINOSA