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(-) Description

Title :  HETERODIMER OF P40PHOX AND P67PHOX PB1 DOMAINS FROM HUMAN NADPH OXIDASE
 
Authors :  M. I. Wilson, D. J. Gill, O. Perisic, M. T. Quinn, R. L. Williams
Date :  02 Apr 03  (Deposition) - 29 Jul 03  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D,J,K,L,M
Biol. Unit 1:  A,J  (1x)
Biol. Unit 2:  B,K  (1x)
Biol. Unit 3:  C,L  (1x)
Biol. Unit 4:  D,M  (1x)
Keywords :  Immune System, Pb1 Heterodimer/Complex, Nadph Oxidase, Pb1 Domain, Heterodimerization (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. I. Wilson, D. J. Gill, O. Perisic, M. T. Quinn, R. L. Williams
Pb1 Domain-Mediated Heterodimerization In Nadph Oxidase And Signaling Complexes Of Atypical Protein Kinase C With Par6 And P62
Mol. Cell V. 12 39 2003
PubMed-ID: 12887891  |  Reference-DOI: 10.1016/S1097-2765(03)00246-6

(-) Compounds

Molecule 1 - NEUTROPHIL CYTOSOL FACTOR 2
    ChainsA, B, C, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPOPTG
    Expression System StrainC41(DE3)
    Expression System Taxid562
    FragmentPB1 DOMAIN, RESIDUES 352-429
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymP67-PHOX
 
Molecule 2 - NEUTROPHIL CYTOSOL FACTOR 4
    ChainsJ, K, L, M
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPOPTG
    Expression System StrainC41(DE3)
    Expression System Taxid562
    FragmentPB1 DOMAIN, RESIDUES 237-339
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymP40-PHOX

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDJKLM
Biological Unit 1 (1x)A   J   
Biological Unit 2 (1x) B   K  
Biological Unit 3 (1x)  C   L 
Biological Unit 4 (1x)   D   M

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 25)

Asymmetric Unit (1, 25)
No.NameCountTypeFull Name
1MSE25Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 7)
No.NameCountTypeFull Name
1MSE7Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1OEY)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1OEY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1OEY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (4, 16)

Asymmetric Unit (4, 16)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_065017G369RNCF2_HUMANPolymorphism137854513A/B/C/DG369R
2UniProtVAR_052620H389QNCF2_HUMANPolymorphism17849502A/B/C/DH389Q
3UniProtVAR_008905R395WNCF2_HUMANPolymorphism13306575A/B/C/DR395W
4UniProtVAR_052621N419INCF2_HUMANPolymorphism35012521A/B/C/DN419I

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (4, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_065017G369RNCF2_HUMANPolymorphism137854513AG369R
2UniProtVAR_052620H389QNCF2_HUMANPolymorphism17849502AH389Q
3UniProtVAR_008905R395WNCF2_HUMANPolymorphism13306575AR395W
4UniProtVAR_052621N419INCF2_HUMANPolymorphism35012521AN419I

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (4, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_065017G369RNCF2_HUMANPolymorphism137854513BG369R
2UniProtVAR_052620H389QNCF2_HUMANPolymorphism17849502BH389Q
3UniProtVAR_008905R395WNCF2_HUMANPolymorphism13306575BR395W
4UniProtVAR_052621N419INCF2_HUMANPolymorphism35012521BN419I

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (4, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_065017G369RNCF2_HUMANPolymorphism137854513CG369R
2UniProtVAR_052620H389QNCF2_HUMANPolymorphism17849502CH389Q
3UniProtVAR_008905R395WNCF2_HUMANPolymorphism13306575CR395W
4UniProtVAR_052621N419INCF2_HUMANPolymorphism35012521CN419I

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 4 (4, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_065017G369RNCF2_HUMANPolymorphism137854513DG369R
2UniProtVAR_052620H389QNCF2_HUMANPolymorphism17849502DH389Q
3UniProtVAR_008905R395WNCF2_HUMANPolymorphism13306575DR395W
4UniProtVAR_052621N419INCF2_HUMANPolymorphism35012521DN419I

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 7)

Asymmetric Unit (1, 7)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PB1PS51745 PB1 domain profile.NCF4_HUMAN237-329
 
 
 
  4J:237-329
K:237-329
L:237-329
M:237-329
NCF2_HUMAN351-429
 
 
  3A:352-428
B:352-427
D:352-428
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PB1PS51745 PB1 domain profile.NCF4_HUMAN237-329
 
 
 
  1J:237-329
-
-
-
NCF2_HUMAN351-429
 
 
  1A:352-428
-
-
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PB1PS51745 PB1 domain profile.NCF4_HUMAN237-329
 
 
 
  1-
K:237-329
-
-
NCF2_HUMAN351-429
 
 
  1-
B:352-427
-
Biological Unit 3 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PB1PS51745 PB1 domain profile.NCF4_HUMAN237-329
 
 
 
  1-
-
L:237-329
-
NCF2_HUMAN351-429
 
 
  0-
-
-
Biological Unit 4 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PB1PS51745 PB1 domain profile.NCF4_HUMAN237-329
 
 
 
  1-
-
-
M:237-329
NCF2_HUMAN351-429
 
 
  1-
-
D:352-428

(-) Exons   (7, 22)

Asymmetric Unit (7, 22)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000002488991ENSE00002158629chr22:37257030-37257245216NCF4_HUMAN1-11110--
1.2ENST000002488992ENSE00001766180chr22:37260087-3726017185NCF4_HUMAN11-39290--
1.3ENST000002488993ENSE00001678302chr22:37260961-37261114154NCF4_HUMAN40-91520--
1.4ENST000002488994ENSE00001775431chr22:37263434-3726350471NCF4_HUMAN91-114240--
1.5ENST000002488995ENSE00000880088chr22:37266457-37266584128NCF4_HUMAN115-157430--
1.6ENST000002488996ENSE00000880089chr22:37267694-3726775158NCF4_HUMAN157-176200--
1.8ENST000002488998ENSE00000653691chr22:37268369-3726846799NCF4_HUMAN177-209330--
1.9aENST000002488999aENSE00001270603chr22:37271695-37271825131NCF4_HUMAN210-253444J:235-253
K:236-253
L:236-253
M:237-253
19
18
18
17
1.9eENST000002488999eENSE00000653693chr22:37272071-3727213666NCF4_HUMAN253-275234J:253-275
K:253-275
L:253-275
M:253-275
23
23
23
23
1.10bENST0000024889910bENSE00001850230chr22:37273670-37274057388NCF4_HUMAN275-339654J:275-339
K:275-339
L:275-339 (gaps)
M:275-339 (gaps)
65
65
65
65

2.1ENST000003675361ENSE00001444961chr1:183560011-18355997537NCF2_HUMAN-00--
2.2cENST000003675362cENSE00001444960chr1:183559494-183559291204NCF2_HUMAN1-58580--
2.3ENST000003675363ENSE00000774250chr1:183556112-18355603083NCF2_HUMAN59-86280--
2.4ENST000003675364ENSE00000922163chr1:183546842-183546734109NCF2_HUMAN86-122370--
2.5ENST000003675365ENSE00000922162chr1:183543756-183543622135NCF2_HUMAN123-167450--
2.6ENST000003675366ENSE00000922161chr1:183542427-183542320108NCF2_HUMAN168-203360--
2.7aENST000003675367aENSE00000922160chr1:183539974-18353991560NCF2_HUMAN204-223200--
2.8bENST000003675368bENSE00000774245chr1:183538320-18353827744NCF2_HUMAN224-238150--
2.9bENST000003675369bENSE00001592444chr1:183536480-183536339142NCF2_HUMAN238-285480--
2.10ENST0000036753610ENSE00000774243chr1:183536123-18353605569NCF2_HUMAN286-308230--
2.11ENST0000036753611ENSE00001738087chr1:183534914-18353483976NCF2_HUMAN309-334261A:347-347
-
-
-
1
-
-
-
2.12bENST0000036753612bENSE00001735809chr1:183533165-18353314026NCF2_HUMAN334-34291A:347-349
-
-
-
3
-
-
-
2.12cENST0000036753612cENSE00001784834chr1:183532720-183532569152NCF2_HUMAN343-393514A:350-393
B:351-393
C:352-393
D:350-393
44
43
42
44
2.13cENST0000036753613cENSE00000922153chr1:183532441-183532330112NCF2_HUMAN393-430384A:393-428
B:393-427
C:393-428
D:393-428
36
35
36
36
2.14bENST0000036753614bENSE00000774239chr1:183529408-183529231178NCF2_HUMAN431-490600--
2.15bENST0000036753615bENSE00001444959chr1:183525365-183524698668NCF2_HUMAN490-526370--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:82
 aligned with NCF2_HUMAN | P19878 from UniProtKB/Swiss-Prot  Length:526

    Alignment length:95
                                   343       353       363       373       383       393       403       413       423     
           NCF2_HUMAN   334 GQKQKEEPKEVKLSVPMPYTLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVKNYCLTLWCEN 428
               SCOP domains d1o             eya_ A: Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)        SCOP domains
               CATH domains 1oe             yA00 A:347-428                                                                  CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...-------------..eeeeee...eeeeee.....hhhhhhhhhhhh...hhh..eee........ee.....hhhhh......eeeeee.. Sec.struct. author
                 SAPs(SNPs) -----------------------------------R-------------------Q-----W-----------------------I--------- SAPs(SNPs)
                    PROSITE -----------------PB1  PDB: A:352-428 UniProt: 351-429                                           PROSITE
           Transcript 2 (1) 2--------Exon 2.12c  PDB: A:350-393 UniProt: 343-393        ----------------------------------- Transcript 2 (1)
           Transcript 2 (2) 2.12b    --------------------------------------------------Exon 2.13c  PDB: A:393-428           Transcript 2 (2)
                 1oey A 347 GSH-------------mAYTLKVHYKYTVVmKTQPGLPYSQVRDmVSKKLELRLEHTKLSYRPRDSNELVPLSEDSmKDAWGQVKNYCLTLWCEN 428
                              |      -      |353       363|      373    |  383       393       403      |413       423     
                              |           350-MSE       364-MSE       378-MSE                         410-MSE              
                            349                                                                                            

Chain B from PDB  Type:PROTEIN  Length:77
 aligned with NCF2_HUMAN | P19878 from UniProtKB/Swiss-Prot  Length:526

    Alignment length:77
                                   360       370       380       390       400       410       420       
           NCF2_HUMAN   351 PYTLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVKNYCLTLWCE 427
               SCOP domains d1oeyb_ B: Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)   SCOP domains
               CATH domains 1oeyB00 B:351-427                                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...eeeeee.....hhhhhhhhhhhh...hhh..eee........ee.....hhhhh......eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------R-------------------Q-----W-----------------------I-------- SAPs(SNPs)
                    PROSITE PB1  PDB: B:352-427 UniProt: 351-429                                          PROSITE
           Transcript 2 (1) Exon 2.12c  PDB: B:351-393 UniProt: 343-393---------------------------------- Transcript 2 (1)
           Transcript 2 (2) ------------------------------------------Exon 2.13c  PDB: B:393-427          Transcript 2 (2)
                 1oey B 351 AYTLKVHYKYTVVmKTQPGLPYSQVRDmVSKKLELRLEHTKLSYRPRDSNELVPLSEDSmKDAWGQVKNYCLTLWCE 427
                                   360   |   370       380       390       400       410       420       
                                       364-MSE       378-MSE                         410-MSE             

Chain C from PDB  Type:PROTEIN  Length:77
 aligned with NCF2_HUMAN | P19878 from UniProtKB/Swiss-Prot  Length:526

    Alignment length:77
                                   361       371       381       391       401       411       421       
           NCF2_HUMAN   352 YTLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVKNYCLTLWCEN 428
               SCOP domains d1oeyc_ C: Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)   SCOP domains
               CATH domains 1oeyC00 C:352-428                                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...eeeee......hhhhhhhhhhhh...hhh..eee........ee.....hhhhh......eeeeee.. Sec.struct. author
                 SAPs(SNPs) -----------------R-------------------Q-----W-----------------------I--------- SAPs(SNPs)
                    PROSITE PB1  PDB: - UniProt: 351-429                                                  PROSITE
           Transcript 2 (1) Exon 2.12c  PDB: C:352-393 [INCOMPLETE]   ----------------------------------- Transcript 2 (1)
           Transcript 2 (2) -----------------------------------------Exon 2.13c  PDB: C:393-428           Transcript 2 (2)
                 1oey C 352 YTLKVHYKYTVVmKTQPGLPYSQVRDmVSKKLELRLEHTKLSYRPRDSNELVPLSEDSmKDAWGQVKNYCLTLWCEN 428
                                   361  |    371      |381       391       401       411       421       
                                      364-MSE       378-MSE                         410-MSE              

Chain D from PDB  Type:PROTEIN  Length:79
 aligned with NCF2_HUMAN | P19878 from UniProtKB/Swiss-Prot  Length:526

    Alignment length:79
                                   359       369       379       389       399       409       419         
           NCF2_HUMAN   350 MPYTLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVKNYCLTLWCEN 428
               SCOP domains d1oeyd_ D: Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)     SCOP domains
               CATH domains -1oeyD00 D:351-428                                                              CATH domains
           Pfam domains (1) --PB1-1oeyD01 D:352-428                                                         Pfam domains (1)
           Pfam domains (2) --PB1-1oeyD02 D:352-428                                                         Pfam domains (2)
           Pfam domains (3) --PB1-1oeyD03 D:352-428                                                         Pfam domains (3)
           Pfam domains (4) --PB1-1oeyD04 D:352-428                                                         Pfam domains (4)
         Sec.struct. author ..eeeeee...eeeeee.....hhhhhhhhhhhh...hhh..eee........ee.....hhhhh......eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------R-------------------Q-----W-----------------------I--------- SAPs(SNPs)
                    PROSITE -PB1  PDB: D:352-428 UniProt: 351-429                                           PROSITE
           Transcript 2 (1) Exon 2.12c  PDB: D:350-393 UniProt: 343-393 ----------------------------------- Transcript 2 (1)
           Transcript 2 (2) -------------------------------------------Exon 2.13c  PDB: D:393-428           Transcript 2 (2)
                 1oey D 350 mAYTLKVHYKYTVVmKTQPGLPYSQVRDmVSKKLELRLEHTKLSYRPRDSNELVPLSEDSmKDAWGQVKNYCLTLWCEN 428
                            |      359    |  369       379       389       399       409|      419         
                          350-MSE       364-MSE       378-MSE                         410-MSE              

Chain J from PDB  Type:PROTEIN  Length:105
 aligned with NCF4_HUMAN | Q15080 from UniProtKB/Swiss-Prot  Length:339

    Alignment length:105
                                   244       254       264       274       284       294       304       314       324       334     
           NCF4_HUMAN   235 DPTNWLRCYYYEDTISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKLHITQKDNYRVYNTMP 339
               SCOP domains d1oeyj_ J: Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase)                               SCOP domains
               CATH domains 1oeyJ00 J:235-339  [code=3.10.20.240, no name defined]                                                    CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee..eeeeeeeee.........hhhhhhhhhhhhh...eeeeee.....eee...hhhhhhhhhh..............eeeee........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --PB1  PDB: J:237-329 UniProt: 237-329                                                         ---------- PROSITE
           Transcript 1 (1) Exon 1.9a          ---------------------Exon 1.10b  PDB: J:275-339 UniProt: 275-339                       Transcript 1 (1)
           Transcript 1 (2) ------------------Exon 1.9e              ---------------------------------------------------------------- Transcript 1 (2)
                 1oey J 235 HmTNWLRVYYYEDTISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALmVRQARGLPSQKRLFPWKLHITQKDNYRVYNTmP 339
                             |     244       254       264       274       284       294       304 |     314       324       334   | 
                           236-MSE                                                               306-MSE                         338-MSE

Chain K from PDB  Type:PROTEIN  Length:104
 aligned with NCF4_HUMAN | Q15080 from UniProtKB/Swiss-Prot  Length:339

    Alignment length:104
                                   245       255       265       275       285       295       305       315       325       335    
           NCF4_HUMAN   236 PTNWLRCYYYEDTISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKLHITQKDNYRVYNTMP 339
               SCOP domains d1oeyk_ K: Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase)                              SCOP domains
               CATH domains -1oeyK00 K:237-339  [code=3.10.20.240, no name defined]                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee..eeeeeeeee.........hhhhhhhhhhhhh...eeeeee.....eee...hhhhhhhhhh..............eeeee........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -PB1  PDB: K:237-329 UniProt: 237-329                                                         ---------- PROSITE
           Transcript 1 (1) Exon 1.9a         ---------------------Exon 1.10b  PDB: K:275-339 UniProt: 275-339                       Transcript 1 (1)
           Transcript 1 (2) -----------------Exon 1.9e              ---------------------------------------------------------------- Transcript 1 (2)
                 1oey K 236 mTNWLRVYYYEDTISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALmVRQARGLPSQKRLFPWKLHITQKDNYRVYNTmP 339
                            |      245       255       265       275       285       295       305|      315       325       335  | 
                            |                                                                   306-MSE                         338-MSE
                          236-MSE                                                                                                   

Chain L from PDB  Type:PROTEIN  Length:99
 aligned with NCF4_HUMAN | Q15080 from UniProtKB/Swiss-Prot  Length:339

    Alignment length:104
                                   245       255       265       275       285       295       305       315       325       335    
           NCF4_HUMAN   236 PTNWLRCYYYEDTISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKLHITQKDNYRVYNTMP 339
               SCOP domains d1oeyl_ L: Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase)                              SCOP domains
               CATH domains -1oeyL00 L:237-339  [code=3.10.20.240, no name defined]                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee..eeeeeeeee.........hhhhhhhhhhhhh...eeeeee.....eee...hhhhhhhhhh...-----......eeeee........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -PB1  PDB: L:237-329 UniProt: 237-329                                                         ---------- PROSITE
           Transcript 1 (1) Exon 1.9a         ---------------------Exon 1.10b  PDB: L:275-339 (gaps) UniProt: 275-339                Transcript 1 (1)
           Transcript 1 (2) -----------------Exon 1.9e              ---------------------------------------------------------------- Transcript 1 (2)
                 1oey L 236 mTNWLRVYYYEDTISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALmVRQARG-----RLFPWKLHITQKDNYRVYNTmP 339
                            |      245       255       265       275       285       295       305|     |  -  |    325       335  | 
                            |                                                                   306-MSE12   318                 338-MSE
                          236-MSE                                                                                                   

Chain M from PDB  Type:PROTEIN  Length:98
 aligned with NCF4_HUMAN | Q15080 from UniProtKB/Swiss-Prot  Length:339

    Alignment length:103
                                   246       256       266       276       286       296       306       316       326       336   
           NCF4_HUMAN   237 TNWLRCYYYEDTISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKLHITQKDNYRVYNTMP 339
               SCOP domains d1oeym_ M: Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase)                             SCOP domains
               CATH domains 1oeyM00 M:237-339  [code=3.10.20.240, no name defined]                                                  CATH domains
           Pfam domains (1) PB1-1oeyM01 M:237-329                                                                        ---------- Pfam domains (1)
           Pfam domains (2) PB1-1oeyM02 M:237-329                                                                        ---------- Pfam domains (2)
           Pfam domains (3) PB1-1oeyM03 M:237-329                                                                        ---------- Pfam domains (3)
           Pfam domains (4) PB1-1oeyM04 M:237-329                                                                        ---------- Pfam domains (4)
         Sec.struct. author .eeeeeeeee..eeeeeeeee.........hhhhhhhhhhhhh...eeeeee.....eee...hhhhhhhhhh..-----.......eeeee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE PB1  PDB: M:237-329 UniProt: 237-329                                                         ---------- PROSITE
           Transcript 1 (1) Exon 1.9a        ---------------------Exon 1.10b  PDB: M:275-339 (gaps) UniProt: 275-339                Transcript 1 (1)
           Transcript 1 (2) ----------------Exon 1.9e              ---------------------------------------------------------------- Transcript 1 (2)
                 1oey M 237 TNWLRVYYYEDTISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALmVRQAR-----KRLFPWKLHITQKDNYRVYNTmP 339
                                   246       256       266       276       286       296       306    |    -|      326       336 | 
                                                                                               306-MSE1   317                  338-MSE

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit

(-) CATH Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 8)

Asymmetric Unit
(-)
Clan: Ubiquitin (279)
(-)
Family: PB1 (15)
1aPB1-1oeyD01D:352-428
1bPB1-1oeyD02D:352-428
1cPB1-1oeyD03D:352-428
1dPB1-1oeyD04D:352-428
1ePB1-1oeyM01M:237-329
1fPB1-1oeyM02M:237-329
1gPB1-1oeyM03M:237-329
1hPB1-1oeyM04M:237-329

(-) Gene Ontology  (30, 39)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (NCF2_HUMAN | P19878)
molecular function
    GO:0048365    Rac GTPase binding    Interacting selectively and non-covalently with Rac protein, any member of the Rac subfamily of the Ras superfamily of monomeric GTPases.
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0008022    protein C-terminus binding    Interacting selectively and non-covalently with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0016175    superoxide-generating NADPH oxidase activity    Catalysis of the reaction: NAD(P)H + O2 = NAD(P)H + O2-.
biological process
    GO:0002479    antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent    The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class I protein complex following intracellular transport via a TAP (transporter associated with antigen processing) pathway. The peptide is typically a fragment of a larger exogenous protein which has been degraded within the cell and is dependent on TAP transport from the cytosol to ER for association with the MHC class I molecule. Class I here refers to classical class I molecules.
    GO:0045454    cell redox homeostasis    Any process that maintains the redox environment of a cell or compartment within a cell.
    GO:0006968    cellular defense response    A defense response that is mediated by cells.
    GO:0045087    innate immune response    Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0045730    respiratory burst    A phase of elevated metabolic activity, during which oxygen consumption increases; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals.
    GO:0042554    superoxide anion generation    The enzymatic generation of superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species, by a cell in response to environmental stress, thereby mediating the activation of various stress-inducible signaling pathways.
    GO:0006801    superoxide metabolic process    The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species.
    GO:0048010    vascular endothelial growth factor receptor signaling pathway    Any series of molecular signals initiated by the binding of an extracellular ligand to a vascular endothelial growth factor receptor (VEGFR) located on the surface of the receiving cell, and ending with regulation of a downstream cellular process, e.g. transcription.
cellular component
    GO:0043020    NADPH oxidase complex    A enzyme complex of which the core is a heterodimer composed of a light (alpha) and heavy (beta) chain, and requires several other water-soluble proteins of cytosolic origin for activity. Functions in superoxide generation by the NADPH-dependent reduction of O2.
    GO:0001669    acrosomal vesicle    A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005730    nucleolus    A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
    GO:0032010    phagolysosome    A membrane-bounded intracellular vesicle formed by maturation of an early phagosome following the ingestion of particulate material by phagocytosis; during maturation, phagosomes acquire markers of late endosomes and lysosomes.

Chain J,K,L,M   (NCF4_HUMAN | Q15080)
molecular function
    GO:0008289    lipid binding    Interacting selectively and non-covalently with a lipid.
    GO:0035091    phosphatidylinositol binding    Interacting selectively and non-covalently with any inositol-containing glycerophospholipid, i.e. phosphatidylinositol (PtdIns) and its phosphorylated derivatives.
    GO:0032266    phosphatidylinositol-3-phosphate binding    Interacting selectively and non-covalently with phosphatidylinositol-3-phosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 3' position.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046983    protein dimerization activity    The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
    GO:0016176    superoxide-generating NADPH oxidase activator activity    Increases the activity of the enzyme superoxide-generating NADPH oxidase.
biological process
    GO:0002479    antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent    The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class I protein complex following intracellular transport via a TAP (transporter associated with antigen processing) pathway. The peptide is typically a fragment of a larger exogenous protein which has been degraded within the cell and is dependent on TAP transport from the cytosol to ER for association with the MHC class I molecule. Class I here refers to classical class I molecules.
    GO:0045454    cell redox homeostasis    Any process that maintains the redox environment of a cell or compartment within a cell.
    GO:0006955    immune response    Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0043085    positive regulation of catalytic activity    Any process that activates or increases the activity of an enzyme.
    GO:0048010    vascular endothelial growth factor receptor signaling pathway    Any series of molecular signals initiated by the binding of an extracellular ligand to a vascular endothelial growth factor receptor (VEGFR) located on the surface of the receiving cell, and ending with regulation of a downstream cellular process, e.g. transcription.
cellular component
    GO:0043020    NADPH oxidase complex    A enzyme complex of which the core is a heterodimer composed of a light (alpha) and heavy (beta) chain, and requires several other water-soluble proteins of cytosolic origin for activity. Functions in superoxide generation by the NADPH-dependent reduction of O2.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005768    endosome    A vacuole to which materials ingested by endocytosis are delivered.
    GO:0010008    endosome membrane    The lipid bilayer surrounding an endosome.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0032010    phagolysosome    A membrane-bounded intracellular vesicle formed by maturation of an early phagosome following the ingestion of particulate material by phagocytosis; during maturation, phagosomes acquire markers of late endosomes and lysosomes.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NCF2_HUMAN | P198781e96 1hh8 1k4u 1wm5 2dmo
        NCF4_HUMAN | Q150801h6h 1w6x 1w70 1z9q 2dyb

(-) Related Entries Specified in the PDB File

1e96 STRUCTURE OF THE RAC/P67PHOX COMPLEX
1h6h STRUCTURE OF THE PX DOMAIN FROM P40PHOX BOUND TO PHOSPHATIDYLINOSITOL 3-PHOSPHATE
1hh8 CRYSTAL STRUCTURE OF THE N-TERMINAL REGION OF THE PHAGOCYTE OXIDASE FACTOR P67PHOX AT 1.8 E RESOLUTION
1ip9 SOLUTION STRUCTURE OF THE PB1 DOMAIN OF BEM1P
1ipg SOLUTION STRUCTURE OF THE PB1 DOMAIN OF BEM1P
1k4u SOLUTION STRUCTURE OF THE C-TERMINAL SH3 DOMAIN OF P67PHOXCOMPLEXED WITH THE C- TERMINAL TAIL REGION OF P47PHOX