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1OEY
Asym. Unit
Info
Asym.Unit (138 KB)
Biol.Unit 1 (36 KB)
Biol.Unit 2 (35 KB)
Biol.Unit 3 (34 KB)
Biol.Unit 4 (35 KB)
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(1)
Title
:
HETERODIMER OF P40PHOX AND P67PHOX PB1 DOMAINS FROM HUMAN NADPH OXIDASE
Authors
:
M. I. Wilson, D. J. Gill, O. Perisic, M. T. Quinn, R. L. Williams
Date
:
02 Apr 03 (Deposition) - 29 Jul 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,J,K,L,M
Biol. Unit 1: A,J (1x)
Biol. Unit 2: B,K (1x)
Biol. Unit 3: C,L (1x)
Biol. Unit 4: D,M (1x)
Keywords
:
Immune System, Pb1 Heterodimer/Complex, Nadph Oxidase, Pb1 Domain, Heterodimerization
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. I. Wilson, D. J. Gill, O. Perisic, M. T. Quinn, R. L. Williams
Pb1 Domain-Mediated Heterodimerization In Nadph Oxidase And Signaling Complexes Of Atypical Protein Kinase C With Par6 And P62
Mol. Cell V. 12 39 2003
[
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Hetero Components
(1, 25)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
1y: SELENOMETHIONINE (MSEy)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
25
Mod. Amino Acid
SELENOMETHIONINE
[
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Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(4, 16)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_065017 (G369R, chain A/B/C/D, )
2: VAR_052620 (H389Q, chain A/B/C/D, )
3: VAR_008905 (R395W, chain A/B/C/D, )
4: VAR_052621 (N419I, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_065017
G
369
R
NCF2_HUMAN
Polymorphism
137854513
A/B/C/D
G
369
R
2
UniProt
VAR_052620
H
389
Q
NCF2_HUMAN
Polymorphism
17849502
A/B/C/D
H
389
Q
3
UniProt
VAR_008905
R
395
W
NCF2_HUMAN
Polymorphism
13306575
A/B/C/D
R
395
W
4
UniProt
VAR_052621
N
419
I
NCF2_HUMAN
Disease (CGD2)
35012521
A/B/C/D
N
419
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 7)
Info
All PROSITE Patterns/Profiles
1: PB1 (J:237-329,K:237-329,L:237-329,M:23...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PB1
PS51745
PB1 domain profile.
NCF4_HUMAN
237-329
4
J:237-329
K:237-329
L:237-329
M:237-329
NCF2_HUMAN
351-429
3
A:352-428
B:352-427
D:352-428
[
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]
Exons
(7, 22)
Info
All Exons
Exon 1.9a (J:235-253 | K:236-253 | L:236-253 ...)
Exon 1.9e (J:253-275 | K:253-275 | L:253-275 ...)
Exon 1.10b (J:275-339 | K:275-339 | L:275-339 ...)
Exon 2.11 (A:347-347 | - | - | -)
Exon 2.12b (A:347-349 | - | - | -)
Exon 2.12c (A:350-393 | B:351-393 | C:352-393 ...)
Exon 2.13c (A:393-428 | B:393-427 | C:393-428 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.8/1.9a
2: Boundary 1.9a/1.9e
3: Boundary 1.9e/1.10b
4: Boundary 1.10b/-
5: Boundary 2.10/2.11
6: Boundary 2.11/2.12b
7: Boundary 2.12b/2.12c
8: Boundary 2.12c/2.13c
9: Boundary 2.13c/2.14b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000248899
1
ENSE00002158629
chr22:
37257030-37257245
216
NCF4_HUMAN
1-11
11
0
-
-
1.2
ENST00000248899
2
ENSE00001766180
chr22:
37260087-37260171
85
NCF4_HUMAN
11-39
29
0
-
-
1.3
ENST00000248899
3
ENSE00001678302
chr22:
37260961-37261114
154
NCF4_HUMAN
40-91
52
0
-
-
1.4
ENST00000248899
4
ENSE00001775431
chr22:
37263434-37263504
71
NCF4_HUMAN
91-114
24
0
-
-
1.5
ENST00000248899
5
ENSE00000880088
chr22:
37266457-37266584
128
NCF4_HUMAN
115-157
43
0
-
-
1.6
ENST00000248899
6
ENSE00000880089
chr22:
37267694-37267751
58
NCF4_HUMAN
157-176
20
0
-
-
1.8
ENST00000248899
8
ENSE00000653691
chr22:
37268369-37268467
99
NCF4_HUMAN
177-209
33
0
-
-
1.9a
ENST00000248899
9a
ENSE00001270603
chr22:
37271695-37271825
131
NCF4_HUMAN
210-253
44
4
J:235-253
K:236-253
L:236-253
M:237-253
19
18
18
17
1.9e
ENST00000248899
9e
ENSE00000653693
chr22:
37272071-37272136
66
NCF4_HUMAN
253-275
23
4
J:253-275
K:253-275
L:253-275
M:253-275
23
23
23
23
1.10b
ENST00000248899
10b
ENSE00001850230
chr22:
37273670-37274057
388
NCF4_HUMAN
275-339
65
4
J:275-339
K:275-339
L:275-339 (gaps)
M:275-339 (gaps)
65
65
65
65
2.1
ENST00000367536
1
ENSE00001444961
chr1:
183560011-183559975
37
NCF2_HUMAN
-
0
0
-
-
2.2c
ENST00000367536
2c
ENSE00001444960
chr1:
183559494-183559291
204
NCF2_HUMAN
1-58
58
0
-
-
2.3
ENST00000367536
3
ENSE00000774250
chr1:
183556112-183556030
83
NCF2_HUMAN
59-86
28
0
-
-
2.4
ENST00000367536
4
ENSE00000922163
chr1:
183546842-183546734
109
NCF2_HUMAN
86-122
37
0
-
-
2.5
ENST00000367536
5
ENSE00000922162
chr1:
183543756-183543622
135
NCF2_HUMAN
123-167
45
0
-
-
2.6
ENST00000367536
6
ENSE00000922161
chr1:
183542427-183542320
108
NCF2_HUMAN
168-203
36
0
-
-
2.7a
ENST00000367536
7a
ENSE00000922160
chr1:
183539974-183539915
60
NCF2_HUMAN
204-223
20
0
-
-
2.8b
ENST00000367536
8b
ENSE00000774245
chr1:
183538320-183538277
44
NCF2_HUMAN
224-238
15
0
-
-
2.9b
ENST00000367536
9b
ENSE00001592444
chr1:
183536480-183536339
142
NCF2_HUMAN
238-285
48
0
-
-
2.10
ENST00000367536
10
ENSE00000774243
chr1:
183536123-183536055
69
NCF2_HUMAN
286-308
23
0
-
-
2.11
ENST00000367536
11
ENSE00001738087
chr1:
183534914-183534839
76
NCF2_HUMAN
309-334
26
1
A:347-347
-
-
-
1
-
-
-
2.12b
ENST00000367536
12b
ENSE00001735809
chr1:
183533165-183533140
26
NCF2_HUMAN
334-342
9
1
A:347-349
-
-
-
3
-
-
-
2.12c
ENST00000367536
12c
ENSE00001784834
chr1:
183532720-183532569
152
NCF2_HUMAN
343-393
51
4
A:350-393
B:351-393
C:352-393
D:350-393
44
43
42
44
2.13c
ENST00000367536
13c
ENSE00000922153
chr1:
183532441-183532330
112
NCF2_HUMAN
393-430
38
4
A:393-428
B:393-427
C:393-428
D:393-428
36
35
36
36
2.14b
ENST00000367536
14b
ENSE00000774239
chr1:
183529408-183529231
178
NCF2_HUMAN
431-490
60
0
-
-
2.15b
ENST00000367536
15b
ENSE00001444959
chr1:
183525365-183524698
668
NCF2_HUMAN
490-526
37
0
-
-
[
close EXON info
]
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1oeya_ (A:)
1b: SCOP_d1oeyb_ (B:)
1c: SCOP_d1oeyc_ (C:)
1d: SCOP_d1oeyd_ (D:)
2a: SCOP_d1oeyj_ (J:)
2b: SCOP_d1oeyk_ (K:)
2c: SCOP_d1oeyl_ (L:)
2d: SCOP_d1oeym_ (M:)
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(
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(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
CAD & PB1 domains
(31)
Family
:
PB1 domain
(24)
Protein domain
:
Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1oeya_
A:
1b
d1oeyb_
B:
1c
d1oeyc_
C:
1d
d1oeyd_
D:
Protein domain
:
Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase)
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d1oeyj_
J:
2b
d1oeyk_
K:
2c
d1oeyl_
L:
2d
d1oeym_
M:
[
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1oeyL00 (L:237-339)
1b: CATH_1oeyM00 (M:237-339)
1c: CATH_1oeyK00 (K:237-339)
1d: CATH_1oeyJ00 (J:235-339)
2a: CATH_1oeyA00 (A:347-428)
2b: CATH_1oeyD00 (D:351-428)
2c: CATH_1oeyB00 (B:351-427)
2d: CATH_1oeyC00 (C:352-428)
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)
Topologies
(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
[code=3.10.20.240, no name defined]
(17)
Human (Homo sapiens)
(9)
1a
1oeyL00
L:237-339
1b
1oeyM00
M:237-339
1c
1oeyK00
K:237-339
1d
1oeyJ00
J:235-339
Homologous Superfamily
:
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
(286)
Human (Homo sapiens)
(177)
2a
1oeyA00
A:347-428
2b
1oeyD00
D:351-428
2c
1oeyB00
B:351-427
2d
1oeyC00
C:352-428
[
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]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_PB1_1oeyD01 (D:352-428)
1b: PFAM_PB1_1oeyD02 (D:352-428)
1c: PFAM_PB1_1oeyD03 (D:352-428)
1d: PFAM_PB1_1oeyD04 (D:352-428)
1e: PFAM_PB1_1oeyM01 (M:237-329)
1f: PFAM_PB1_1oeyM02 (M:237-329)
1g: PFAM_PB1_1oeyM03 (M:237-329)
1h: PFAM_PB1_1oeyM04 (M:237-329)
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Clans
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(
)
(
)
Organisms
(
)
(
)
Clan
:
Ubiquitin
(279)
Family
:
PB1
(15)
Homo sapiens (Human)
(8)
1a
PB1-1oeyD01
D:352-428
1b
PB1-1oeyD02
D:352-428
1c
PB1-1oeyD03
D:352-428
1d
PB1-1oeyD04
D:352-428
1e
PB1-1oeyM01
M:237-329
1f
PB1-1oeyM02
M:237-329
1g
PB1-1oeyM03
M:237-329
1h
PB1-1oeyM04
M:237-329
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Asym.Unit (138 KB)
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