1O94 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   TERNARY COMPLEX BETWEEN TRIMETHYLAMINE DEHYDROGENASE AND ELECTRON TRANSFERRING FLAVOPROTEIN

Authors :   D. Leys, J. Basran, F. Talfournier, M. J. Sutcliffe, N. S. Scrutton

Date :   11 Dec 02 (Deposition) - 06 Feb 03 (Release) - 18 Sep 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym./Biol. Unit : A,B,C,D,E,F

Keywords :   Electron Transport, Protein Complex, Electron Transfer, Dehydrogenase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. Leys, J. Basran, F. Talfournier, M. J. Sutcliffe, N. S. Scrutton
Extensive Conformational Sampling In A Ternary Electron Transfer Complex.
Nat. Struct. Biol. V. 10 219 2003
PubMed-ID: 12567183 | Reference-DOI: 10.1038/NSB894

Molecule 1 - TRIMETHYLAMINE DEHYDROGENASE
	Chains	:	A, B
	EC Number	:	1.5.99.7
	Organism Scientific	:	METHYLOPHILUS METHYLOTROPHUS
	Organism Taxid	:	17
	Other Details	:	LINK BETWEEN FMN AND RESIDUE 30
	Synonym	:	TMADH

Molecule 2 - ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT
	Chains	:	C, E
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	METHYLOPHILUS METHYLOTROPHUS
	Organism Taxid	:	17

Molecule 3 - ELECTRON TRANSFER FLAVOPROTEIN ALPHA-SUBUNIT
	Chains	:	D, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	METHYLOPHILUS METHYLOTROPHUS
	Organism Taxid	:	17

		1	2	3	4	5	6
Asymmetric/Biological Unit	:	A	B	C	D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 8)

No.	Name	Count	Type	Full Name
1	ADP	2	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	AMP	2	Ligand/Ion	ADENOSINE MONOPHOSPHATE
3	FMN	2	Ligand/Ion	FLAVIN MONONUCLEOTIDE
4	SF4	2	Ligand/Ion	IRON/SULFUR CLUSTER

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	VAL A:27 , PRO A:28 , HIS A:29 , CYS A:30 , GLU A:59 , TYR A:60 , GLU A:103 , TYR A:169 , HIS A:172 , ARG A:222 , TRP A:264 , ASP A:267 , VAL A:297 , ARG A:299 , CYS A:320 , ALA A:321 , ARG A:322 , PRO A:323 , ILE A:352 , HOH A:2712 , HOH A:2714 , HOH A:2715	BINDING SITE FOR RESIDUE FMN A1730
2	AC2	SOFTWARE	VAL A:395 , GLY A:396 , GLY A:398 , PRO A:399 , SER A:400 , ASP A:419 , THR A:420 , GLY A:426 , HIS A:427 , PRO A:469 , MET A:470 , ALA A:486 , THR A:487 , GLY A:488 , GLY A:673 , ASP A:674 , HOH A:2402 , HOH A:2488 , HOH A:2716 , HOH A:2717 , HOH A:2718	BINDING SITE FOR RESIDUE ADP A1731
3	AC3	SOFTWARE	ARG A:322 , ILE A:325 , CYS A:345 , ILE A:346 , GLY A:347 , CYS A:348 , ASN A:349 , CYS A:351 , CYS A:364 , THR A:365	BINDING SITE FOR RESIDUE SF4 A1732
4	AC4	SOFTWARE	VAL B:27 , PRO B:28 , HIS B:29 , CYS B:30 , GLU B:59 , TYR B:60 , GLU B:103 , TYR B:169 , HIS B:172 , ARG B:222 , TRP B:264 , ASP B:267 , ALA B:268 , VAL B:297 , ARG B:299 , CYS B:320 , ALA B:321 , ARG B:322 , PRO B:323 , ILE B:352 , HOH B:2388 , HOH B:2823 , HOH B:2824	BINDING SITE FOR RESIDUE FMN B1730
5	AC5	SOFTWARE	VAL B:395 , GLY B:396 , GLY B:398 , PRO B:399 , SER B:400 , ASP B:419 , THR B:420 , GLY B:426 , HIS B:427 , PRO B:469 , MET B:470 , ALA B:486 , THR B:487 , GLY B:488 , GLY B:673 , ASP B:674 , HOH B:2825 , HOH B:2826 , HOH B:2827 , HOH B:2828 , HOH B:2829 , HOH B:2830	BINDING SITE FOR RESIDUE ADP B1731
6	AC6	SOFTWARE	ARG B:322 , ILE B:325 , CYS B:345 , CYS B:348 , ASN B:349 , CYS B:351 , CYS B:364 , THR B:365	BINDING SITE FOR RESIDUE SF4 B1732
7	AC7	SOFTWARE	ALA C:6 , VAL C:7 , LYS C:8 , ASN C:36 , ASP C:39 , VAL C:62 , SER C:63 , VAL C:64 , ALA C:118 , GLY C:119 , GLN C:121 , SER C:122 , TYR C:127 , ALA C:128 , SER C:129 , THR C:130 , HOH C:2113 , HOH C:2114 , HOH C:2177 , HOH C:2178	BINDING SITE FOR RESIDUE AMP C1236
8	AC8	SOFTWARE	ALA E:6 , VAL E:7 , LYS E:8 , ASN E:36 , ASP E:39 , VAL E:62 , SER E:63 , VAL E:64 , VAL E:100 , ALA E:118 , GLY E:119 , GLN E:121 , SER E:122 , TYR E:127 , ALA E:128 , SER E:129 , THR E:130 , HOH E:2117 , HOH E:2126 , HOH E:2197 , HOH E:2198	BINDING SITE FOR RESIDUE AMP E1237

(no "SS Bond" information available for 1O94)

Asymmetric/Biological Unit

No.	Residues
1	Thr A:70	-	His A:71
2	Thr B:70	-	His B:71
3	Glu C:15	-	Asp C:16
4	Cys C:176	-	Pro C:177
5	Glu E:15	-	Asp E:16
6	Cys E:176	-	Pro E:177

(no "SAP(SNP)/Variant" information available for 1O94)

Asymmetric/Biological Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ETF_BETA	PS01065	Electron transfer flavoprotein beta-subunit signature.	ETFB_METME	160-181	2	C:160-181 E:160-181

(no "Exon" information available for 1O94)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:729
 aligned with DHTM_METME | P16099 from UniProtKB/Swiss-Prot  Length:730

    Alignment length:729
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721         
           DHTM_METME     2 ARDPKHDILFEPIQIGPKTLRNRFYQVPHCIGAGSDKPGFQSAHRSVKAEGGWAALNTEYCSINPESDDTHRLSARIWDEGDVRNLKAMTDEVHKYGALAGVELWYGGAHAPNMESRATPRGPSQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPFLPQKVEQGRYDDIRVCIGCNVCISRWEIGGPPMICTQNATAGEEYRRGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALGQKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNELKARESEWAENDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEANPQIAIPYKRETIAWGTPHMPGGNFKIEYKV 730
               SCOP domains d1o94a1 A:1-340 Trimethylamine dehydrogenase, N-terminal domain                                                                                                                                                                                                                                                                                     d1o94a3 A:341-489,A:646-729 Trimethylamine dehydrogenase, middle domain                                                                              d1o94a2 A:490-645 Trimethylamine dehydrogenase, C-terminal domain                                                                                           d1o94a3 A:341-489,A:646-729 Trimethylamine dehydrogenase, middle domain              SCOP domains
               CATH domains 1o94A01 A:1-384 Aldolase class I                                                                                                                                                                                                                                                                                                                                                                1o94A02 A:385-491,A:644-704 NAD(P)-binding Rossmann-like Domain                                            1o94A03 A:492-643  [code=3.50.50.60, no name defined]                                                                                                   1o94A02 A:385-491,A:644-704                                  ------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh.eee..eee...eee..........hhhhhhhhhhhhhhh...eeeeeeee............ee..hhhhhhhhhhhhhhhhh...eeeeeee.hhhhh.........ee..............ee.hhhhhhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhh............hhhhhhhhhhhhhhhhhhhhh...eeeeeeeee...........hhhhhhhhhhhhhh.eeeeee....hhhhh...........hhhhhh.........ee......hhhhhhhhhhh.....eeehhhhhhh.hhhhhhhh.hhhhh......hhhhhhhhhh.............hhhhhh.............eeeee..hhhhhhhhhhhhhh..eeeee........hhhhhh....hhhhhhhhhhhhhhhhhhhhhh...eee......hhhhhhh....eeee...eee......................eehhhhhhhh......eeeeee....hhhhhhhhhhhhh..eeeeee....hhhhhhh.hhhhhhhhhhhh..eee..eeeeeee..eeeeee........................eeee..eeeee..eee.hhhhhhhhhhhhhhhhhh..eeee.hhhh...hhhhhhhhhhhhhhh................................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1o94 A   1 ARDPKHDILFEPIQIGPKTLRNRFYQVPHCIGAGSDKPGFQSAHRSVKAEGGWAALNTEYCSINPESDDTHRLSARIWDEGDVRNLKAMTDEVHKYGALAGVELWYGGAHAPNMESRATPRGPSQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPFLPQKVEQGRYDDIRVCIGCNVCISRWEIGGPPMICTQNATAGEEYRRGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALGQKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNELKARESEWAENDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEANPQIAIPYKRETIAWGTPHMPGGNFKIEYKV 729
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720

Chain B from PDB  Type:PROTEIN  Length:729
 aligned with DHTM_METME | P16099 from UniProtKB/Swiss-Prot  Length:730

    Alignment length:729
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721         
           DHTM_METME     2 ARDPKHDILFEPIQIGPKTLRNRFYQVPHCIGAGSDKPGFQSAHRSVKAEGGWAALNTEYCSINPESDDTHRLSARIWDEGDVRNLKAMTDEVHKYGALAGVELWYGGAHAPNMESRATPRGPSQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPFLPQKVEQGRYDDIRVCIGCNVCISRWEIGGPPMICTQNATAGEEYRRGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALGQKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNELKARESEWAENDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEANPQIAIPYKRETIAWGTPHMPGGNFKIEYKV 730
               SCOP domains d1o94b1 B:1-340 Trimethylamine dehydrogenase, N-terminal domain                                                                                                                                                                                                                                                                                     d1o94b3 B:341-489,B:646-729 Trimethylamine dehydrogenase, middle domain                                                                              d1o94b2 B:490-645 Trimethylamine dehydrogenase, C-terminal domain                                                                                           d1o94b3 B:341-489,B:646-729 Trimethylamine dehydrogenase, middle domain              SCOP domains
               CATH domains 1o94B01 B:1-384 Aldolase class I                                                                                                                                                                                                                                                                                                                                                                1o94B02 B:385-491,B:644-704 NAD(P)-binding Rossmann-like Domain                                            1o94B03 B:492-643  [code=3.50.50.60, no name defined]                                                                                                   1o94B02 B:385-491,B:644-704                                  ------------------------- CATH domains
           Pfam domains (1) -------Oxidored_FMN-1o94B03 B:8-341                                                                                                                                                                                                                                                                                                                  -------------------------------------------------Pyr_redox_2-1o94B01 B:391-534                                                                                                                   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) -------Oxidored_FMN-1o94B04 B:8-341                                                                                                                                                                                                                                                                                                                  -------------------------------------------------Pyr_redox_2-1o94B02 B:391-534                                                                                                                   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
         Sec.struct. author ..hhhhhhhhh.eee..eee...eee..........hhhhhhhhhhhhhhh...eeeeeeee............ee..hhhhhhhhhhhhhhhhhh..eeeeeee.hhhhh.........ee..............ee.hhhhhhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhh............hhhhhhhhhhhhhhhhhhhhh...eeeeeeeee............hhhhhhhhhh....eeeeee....hhhhh...........hhhhhh.........eee.....hhhhhhhhhhh.....eeehhhhhhh.hhhhhhhh.hhhhh......hhhhhhhhhh................................eeeee..hhhhhhhhhhhhhh..eeeee........hhhhhhh...hhhhhhhhhhhhhhhhhhhh.....eee......hhhhhhh....eeee...eee......................eehhhhhhhh......eeeeee....hhhhhhhhhhhhh..eeeeee....hhhhhhh.hhhhhhhhhhhh..eee..eeeeeee..eeeeee........................eeee..eeeee..eee.hhhhhhhhhhhhhhhhhh..eeee.hhhh...hhhhhhhhhhhhhhh................................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1o94 B   1 ARDPKHDILFEPIQIGPKTLRNRFYQVPHCIGAGSDKPGFQSAHRSVKAEGGWAALNTEYCSINPESDDTHRLSARIWDEGDVRNLKAMTDEVHKYGALAGVELWYGGAHAPNMESRATPRGPSQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPFLPQKVEQGRYDDIRVCIGCNVCISRWEIGGPPMICTQNATAGEEYRRGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALGQKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNELKARESEWAENDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEANPQIAIPYKRETIAWGTPHMPGGNFKIEYKV 729
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720

Chain C from PDB  Type:PROTEIN  Length:233
 aligned with ETFB_METME | P53570 from UniProtKB/Swiss-Prot  Length:264

    Alignment length:235
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230     
           ETFB_METME     1 MKILVAVKQTAALEEDFEIREDGMDVDEDFMMYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDRVDESLRKCLAKGADRAVRVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNWPHAAVVADLQYKPGDNKAVIRRELEGGMLQEVEINCPAVLTIQLGINKPRYASLRGIKQAATKPIEEVSLADIGLSANDVGAAQSMSRVRRMYIP 235
               SCOP domains d1o94c_ C: Small, be ta subunit of electron transfer f lavoprotein ETFP                                                                                                                                                                     SCOP domains
               CATH domains 1o94C00 C:1-235 Tyro syl-Transfer RNA Synthetase , sub unit E, domain 1                                                                                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..eeeee.......-.....hhh.eeeeehhhhhhhhhhhhhhhhh..-..eeeeeee.hhhhhhhhhhhhhh...eeeee.hhhhh..hhhhhhhhhhhhhhhhh..eeeee.........hhhhhhhhhhh..eeeeeeeee......eeeeeee.....eeeeeee...eeee..........hhhhhhhhhhh..eee.hhhhh.hhhhhhhhhh..eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------ETF_BETA              ------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1o94 C   1 MKILVAVKQTAALEEDFEIR-DGMDVDEDFMMYDLNEWDDFSLEEAMKIKESSD-DVEVVVVSVGPDRVDESLRKCLAKGADRAVRVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNWPHAAVVADLQYKPGDNKAVIRRELEGGMLQEVEINCPAVLTIQLGINKPRYASLRGIKQAATKPIEEVSLADIGLSANDVGAAQSMSRVRRMYIP 235
                                    10        20 |      30        40        50   | |  60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230     
                                              20 |                              54 |                                                                                                                                                                                   
                                                22                                56

Chain D from PDB  Type:PROTEIN  Length:189
 aligned with ETFA_METME | P53571 from UniProtKB/Swiss-Prot  Length:321

    Alignment length:189
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181         
           ETFA_METME     2 SKILVIAEHRRNDLRPVSLELIGAANGLKKSGEDKVVVAVIGSQADAFVPALSVNGVDELVVVKGSSIDFDPDVFEASVSALIAAHNPSVVLLPHSVDSLGYASSLASKTGYGFATDVYIVEYQGDELVATRGGYNQKVNVEVDFPGKSTVVLTIRPSVFKPLEGAGSPVVSNVDAPSVQSRSQNKDYV 190
               SCOP domains d1o94d_ D: Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain                                                                                                     SCOP domains
               CATH domains 1o94D00 D:1-189 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1                                                                                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..ee..ee.hhhhhhhhhhhh.......eeeeeee..hhhhhhhhhh.....eeeeee......hhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhh...eeeeee.eeeee..eeeeeeee....eeeeee......eeeee..............eeeeee.......eeeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1o94 D   1 SKILVIAEHRRNDLRPVSLELIGAANGLKKSGEDKVVVAVIGSQADAFVPALSVNGVDELVVVKGSSIDFDPDVFEASVSALIAAHNPSVVLLPHSVDSLGYASSLASKTGYGFATDVYIVEYQGDELVATRGGYNQKVNVEVDFPGKSTVVLTIRPSVFKPLEGAGSPVVSNVDAPSVQSRSQNKDYV 189
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180

Chain E from PDB  Type:PROTEIN  Length:236
 aligned with ETFB_METME | P53570 from UniProtKB/Swiss-Prot  Length:264

    Alignment length:236
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230      
           ETFB_METME     1 MKILVAVKQTAALEEDFEIREDGMDVDEDFMMYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDRVDESLRKCLAKGADRAVRVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNWPHAAVVADLQYKPGDNKAVIRRELEGGMLQEVEINCPAVLTIQLGINKPRYASLRGIKQAATKPIEEVSLADIGLSANDVGAAQSMSRVRRMYIPE 236
               SCOP domains d1o94e_ E: Small, beta subunit of electron transfer flavoprotein ETFP                                                                                                                                                                        SCOP domains
               CATH domains 1o94E00 E:1-236 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1                                                                                                                                                                        CATH domains
           Pfam domains (1) ----------------------ETF-1o94E01 E:23-189                                                                                                                                                   ----------------------------------------------- Pfam domains (1)
           Pfam domains (2) ----------------------ETF-1o94E02 E:23-189                                                                                                                                                   ----------------------------------------------- Pfam domains (2)
         Sec.struct. author .eeeee..eeeee.............hhh.eeeeehhhhhhhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhhhhh...eeeee.hhhhh..hhhhhhhhhhhhhhhhh..eeeee.........hhhhhhhhhhh..eeeeeeeee......eeeeeee.....eeeeeee...eeee..........hhhhhhhhh....eee.hhhhh.hhhhhhhhhh..eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------ETF_BETA              ------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1o94 E   1 MKILVAVKQTAALEEDFEIREDGMDVDEDFMMYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDRVDESLRKCLAKGADRAVRVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNWPHAAVVADLQYKPGDNKAVIRRELEGGMLQEVEINCPAVLTIQLGINKPRYASLRGIKQAATKPIEEVSLADIGLSANDVGAAQSMSRVRRMYIPE 236
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230

Chain F from PDB  Type:PROTEIN  Length:189
 aligned with ETFA_METME | P53571 from UniProtKB/Swiss-Prot  Length:321

    Alignment length:189
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181         
           ETFA_METME     2 SKILVIAEHRRNDLRPVSLELIGAANGLKKSGEDKVVVAVIGSQADAFVPALSVNGVDELVVVKGSSIDFDPDVFEASVSALIAAHNPSVVLLPHSVDSLGYASSLASKTGYGFATDVYIVEYQGDELVATRGGYNQKVNVEVDFPGKSTVVLTIRPSVFKPLEGAGSPVVSNVDAPSVQSRSQNKDYV 190
               SCOP domains d1o94f_ F: Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain                                                                                                     SCOP domains
               CATH domains 1o94F00 F:1-189 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1                                                                                                                         CATH domains
           Pfam domains (1) -ETF-1o94F01 F:2-162                                                                                                                                              --------------------------- Pfam domains (1)
           Pfam domains (2) -ETF-1o94F02 F:2-162                                                                                                                                              --------------------------- Pfam domains (2)
         Sec.struct. author .eeeee..ee..ee.hhhhhhhhhhhhhh.....eeeeeee..hhhhhhhhhh.....eeeeee......hhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhh.eeeeee.eeeee..eeeeeeee....eeeeee......eeeee..............eeeeee.......eeeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1o94 F   1 SKILVIAEHRRNDLRPVSLELIGAANGLKKSGEDKVVVAVIGSQADAFVPALSVNGVDELVVVKGSSIDFDPDVFEASVSALIAAHNPSVVLLPHSVDSLGYASSLASKTGYGFATDVYIVEYQGDELVATRGGYNQKVNVEVDFPGKSTVVLTIRPSVFKPLEGAGSPVVSNVDAPSVQSRSQNKDYV 189
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	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: HUP (230)

Family: ETF (4)

Methylophilus methylotrophus (Bacterium W3A1) (3)

1a	ETF-1o94F01	F:2-162
1b	ETF-1o94F02	F:2-162
1c	ETF-1o94E01	E:23-189
1d	ETF-1o94E02	E:23-189

Clan: NADP_Rossmann (1239)

Family: Pyr_redox_2 (69)

Methylophilus methylotrophus (Bacterium W3A1) (3)

2a	Pyr_redox_2-1o94B01	B:391-534
2b	Pyr_redox_2-1o94B02	B:391-534

Clan: TIM_barrel (694)

Family: Oxidored_FMN (38)

Methylophilus methylotrophus (Bacterium W3A1) (3)

3a	Oxidored_FMN-1o94B03	B:8-341
3b	Oxidored_FMN-1o94B04	B:8-341

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (DHTM_METME | P16099)

molecular function
	GO:0051539	4 iron, 4 sulfur cluster binding	Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
	GO:0010181	FMN binding	Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0051536	iron-sulfur cluster binding	Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0050470	trimethylamine dehydrogenase activity	Catalysis of the reaction: trimethylamine + H2O + electron-transferring flavoprotein = dimethylamine + formaldehyde + reduced electron-transferring flavoprotein.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Chain C,E (ETFB_METME | P53570)

molecular function
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Chain D,F (ETFA_METME | P53571)

molecular function
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0050660	flavin adenine dinucleotide binding	Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Asymmetric/Biological Unit
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		Glu E:15 - Asp E:16	[ RasMol ]
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		Thr B:70 - His B:71	[ RasMol ]

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	1o94
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	ETFB_METME \| P53570
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	1.5.99.7
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UniProtKB/Swiss-Prot
	DHTM_METME \| P16099	:	1djn 1djq 1o95 2tmd
	ETFA_METME \| P53571	:	1e11 1o95 1o96 1o97 3clr 3cls 3clt 3clu
	ETFB_METME \| P53570	:	1e11 1o95 1o96 1o97 3clr 3cls 3clt 3clu

1djn	STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF RECOMBINANT WILD TYPE TRIMETHYLAMINE DEHYDROGENASE FROM METHYLOPHILUS METHYLOTROPHUS ( SP. W3A1)
1djq	STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF RECOMBINANT C30A MUTANT OF TRIMETHYLAMINE DEHYDROGENASE FROM METHYLOPHILUS METHYLOTROPHUS ( SP. W3A1)
1e11	MODEL STRUCTURE OF ELECTRON TRANSFERRING FLAVOPROTEIN FROM METHYLOPHILUS METHYLOTROPUS ( CA COORDINATES)
1o95	TERNARY COMPLEX BETWEEN TRIMETHYLAMINE DEHYDROGENASE AND ELECTRON TRANSFERRING FLAVOPROTEIN
1o96	STRUCTURE OF ELECTRON TRANSFERRING FLAVOPROTEIN FOR METHYLOPHILUS METHYLOTROPHUS.
1o97	STRUCTURE OF ELECTRON TRANSFERRING FLAVOPROTEIN FROM METHYLOPHILUS METHYLOTROPHUS, RECOGNITION LOOP REMOVED BY LIMITED PROTEOLYSIS
2tmd	TRIMETHYLAMINE DEHYDROGENASE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 8)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (5, 10)

CATH Domains (4, 10)

Pfam Domains (3, 8)

Gene Ontology (10, 13)

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