1O64 - JenaLib

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Title :   CRYSTAL STRUCTURE OF AN ATP PHOSPHORIBOSYLTRANSFERASE

Authors :   Structural Genomix

Date :   23 Oct 03 (Deposition) - 11 Nov 03 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym./Biol. Unit : A,B

Keywords :   Structural Genomics, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Badger, J. M. Sauder, J. M. Adams, S. Antonysamy, K. Bain, M. G. Bergseid, S. G. Buchanan, M. D. Buchanan, Y. Batiyenko, J. A. Christopher, S. Emtage, A. Eroshkina, I. Feil, E. B. Furlong, K. S. Gajiwala, X. Gao, D. He, J. Hendle, A. Huber, K. Hoda, P. Kearins, C. Kissinger, B. Laubert, H. A. Lewis, J. Lin, K. Loomis, D. Lorimer, G. Louie, M. Maletic, C. D. Marsh, I. Miller, J. Molinari, H. J. Muller-Dieckmann, J. M. Newman, B. W. Noland, B. Pagarigan, F. Park, T. S. Peat, K. W. Post, S. Radojicic, A. Ramos, R. Romero, M. E. Rutter, W. E. Sanderson, K. D. Schwinn, J. Tresser, J. Winhoven, T. A. Wright, L. Wu, J. Xu, T. J. Harris
Structural Analysis Of A Set Of Proteins Resulting From A Bacterial Genomics Project
Proteins V. 60 787 2005
PubMed-ID: 16021622 | Reference-DOI: 10.1002/PROT.20541

Molecule 1 - ATP PHOSPHORIBOSYLTRANSFERASE
	Chains	:	A, B
	EC Number	:	2.4.2.17
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	HISG, TM1042
	Organism Scientific	:	THERMOTOGA MARITIMA
	Organism Taxid	:	2336

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 2)

No.	Name	Count	Type	Full Name
1	PO4	2	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:45 , PRO A:46 , PHE A:47 , LYS B:130	BINDING SITE FOR RESIDUE PO4 A 219
2	AC2	SOFTWARE	LYS A:130 , ARG B:45 , PRO B:46 , PHE B:47	BINDING SITE FOR RESIDUE PO4 B 219

Asymmetric/Biological Unit

No.	Residues
1	A:117	-	A:124
2	B:117	-	B:124

(no "Cis Peptide Bond" information available for 1O64)

(no "SAP(SNP)/Variant" information available for 1O64)

Asymmetric/Biological Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ATP_P_PHORIBOSYLTR	PS01316	ATP phosphoribosyltransferase signature.	HIS1_THEMA	134-155	2	A:134-155 B:134-155

(no "Exon" information available for 1O64)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:203
 aligned with HIS1_THEMA | Q9X0D2 from UniProtKB/Swiss-Prot  Length:208

    Alignment length:203
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201   
           HIS1_THEMA     2 LKLAIPKGRLEEKVMTYLKKTGVIFERESSILREGKDIVCFMVRPFDVPTYLVHGVADIGFCGTDVLLEKETSLIQPFFIPTNISRMVLAGPKGRGIPEGEKRIATKFPNVTQRYCESKGWHCRIIPLKGSVELAPIAGLSDLIVDITETGRTLKENNLEILDEIFVIRTHVVVNPVSYRTKREEVVSFLEKLQEVIEHDSNE 204
               SCOP domains d1o64a_ A: ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain                                                                                                                               SCOP domains
               CATH domains 1o64A01 A:2-85,A:168-204 Periplasmic binding protein-like II                        1o64A02 A:86-167 Periplasmic binding protein-like II                              1o64A01 A:2-85,A:168-204              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhh.....ee...eeee..eeeeeehhhhhhhhhhh....eeeeehhhhhhh........eeeeeeeeeeeeee.........eeeee.hhhhhhhhhhhh...eeeee.....hhhhhh....eeeeee..hhhhhhh.eeeeeeeeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ATP_P_PHORIBOSYLTR    ------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1o64 A   2 LKLAIPKGRLEEKVMTYLKKTGVIFERESSILREGKDIVCFMVRPFDVPTYLVHGVADIGFCGTDVLLEKETSLIQPFFIPTNISRMVLAGPKGRGIPEGEKRIATKFPNVTQRYCESKGWHCRIIPLKGSVELAPIAGLSDLIVDITETGRTLKENNLEILDEIFVIRTHVVVNPVSYRTKREEVVSFLEKLQEVIEHDSNE 204
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201

Chain B from PDB  Type:PROTEIN  Length:200
 aligned with HIS1_THEMA | Q9X0D2 from UniProtKB/Swiss-Prot  Length:208

    Alignment length:200
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201
           HIS1_THEMA     2 LKLAIPKGRLEEKVMTYLKKTGVIFERESSILREGKDIVCFMVRPFDVPTYLVHGVADIGFCGTDVLLEKETSLIQPFFIPTNISRMVLAGPKGRGIPEGEKRIATKFPNVTQRYCESKGWHCRIIPLKGSVELAPIAGLSDLIVDITETGRTLKENNLEILDEIFVIRTHVVVNPVSYRTKREEVVSFLEKLQEVIEHD 201
               SCOP domains d1o64b_ B: ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain                                                                                                                            SCOP domains
               CATH domains 1o64B01 B:2-85,B:168-201 Periplasmic binding protein-like II                        1o64B02 B:86-167 Periplasmic binding protein-like II                              1o64B01 B:2-85,B:168-201           CATH domains
           Pfam domains (1) ------------------------------------------HisG-1o64B01 B:44-198                                                                                                                                      --- Pfam domains (1)
           Pfam domains (2) ------------------------------------------HisG-1o64B02 B:44-198                                                                                                                                      --- Pfam domains (2)
         Sec.struct. author .eeeee...hhhhhhhhhhhhh..eeee...eeee..eeeeeehhhhhhhhh......eeeeehhhhhhh....eeeeeeeeeeeeeeeeee.........eeeee.hhhhhhhhhhhh...eeeee.....hhhhhh....eeeeee..hhhhhh..eeeeeeeeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ATP_P_PHORIBOSYLTR    ---------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1o64 B   2 LKLAIPKGRLEEKVMTYLKKTGVIFERESSILREGKDIVCFMVRPFDVPTYLVHGVADIGFCGTDVLLEKETSLIQPFFIPTNISRMVLAGPKGRGIPEGEKRIATKFPNVTQRYCESKGWHCRIIPLKGSVELAPIAGLSDLIVDITETGRTLKENNLEILDEIFVIRTHVVVNPVSYRTKREEVVSFLEKLQEVIEHD 201
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Periplasmic binding protein-like II (813)

Superfamily: Periplasmic binding protein-like II (813)

Family: Phosphate binding protein-like (463)

Protein domain: ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain (10)

Thermotoga maritima [TaxId: 2336] (3)

1a	d1o64a_	A:
1b	d1o64b_	B:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: D-Maltodextrin-Binding Protein; domain 2 (600)

Homologous Superfamily: Periplasmic binding protein-like II (486)

Thermotoga maritima. Organism_taxid: 2336. (2)

1a	1o64A01	A:2-85,A:168-204
1b	1o64B01	B:2-85,B:168-201
1c	1o64A02	A:86-167
1d	1o64B02	B:86-167

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: PBP (391)

Family: HisG (10)

Thermotoga maritima (3)

1a	HisG-1o64B01	B:44-198
1b	HisG-1o64B02	B:44-198

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (HIS1_THEMA | Q9X0D2)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0003879	ATP phosphoribosyltransferase activity	Catalysis of the reaction: 1-(5-phospho-D-ribosyl)-ATP + diphosphate = ATP + 5-phospho-alpha-D-ribose 1-diphosphate.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016757	transferase activity, transferring glycosyl groups	Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
biological process
	GO:0008652	cellular amino acid biosynthetic process	The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
	GO:0000105	histidine biosynthetic process	The chemical reactions and pathways resulting in the formation of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric/Biological Unit
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Access by PDB/NDB ID
	1o64
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	HIS1_THEMA \| Q9X0D2	:	1o63 1usy

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SS Bonds (2, 2)

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