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Title :   CRYSTAL STRUCTURE OF A DUF861 FAMILY PROTEIN (TM1112) FROM THERMOTOGA MARITIMA AT 1.83 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   06 Oct 03 (Deposition) - 11 Nov 03 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.83

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Cupin, Novel Thermotoga Maritima Enzyme, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. Mcmullan, R. Schwarzenbacher, L. Jaroszewski, F. Von Delft, H. E. Klock, J. Vincent, K. Quijano, P. Abdubek, E. Ambing, T. Biorac, L. S. Brinen, J. M. Canaves, X. Dai, A. M. Deacon, M. Didonato, M. A. Elsliger, S. Eshaghi, R. Floyd, A. Godzik, C. Grittini, S. K. Grzechnik, E. Hampton, C. Karlak, E. Koesema, A. Kreusch, P. Kuhn I. Levin, T. M. Mcphillips, M. D. Miller, A. Morse, K. Moy, J. Ouyang, R. Page, R. Reyes, F. Rezezadeh, A. Robb, E. Sims, G. Spraggon, R. C. Stevens, H. Van Den Bedem, J. Velasquez, X. Wang, B. West, G. Wolf, Q. Xu, K. O. Hodgson, J. Wooley, S. A. Lesley, I. A. Wilson
Crystal Structure Of A Novel Thermotoga Maritima Enzyme (Tm1112) From The Cupin Family At 1. 83 A Resolution
Proteins V. 56 615 2004
PubMed-ID: 15229894 | Reference-DOI: 10.1002/PROT.20139

Molecule 1 - NOVEL THERMOTOGA MARITIMA ENZYME TM1112
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	TM1112
	Organism Scientific	:	THERMOTOGA MARITIMA
	Organism Taxid	:	2336

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 3)

No.	Name	Count	Type	Full Name
1	UNL	3	Ligand/Ion	UNKNOWN LIGAND

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	UNL	1	Ligand/Ion	UNKNOWN LIGAND

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	UNL	2	Ligand/Ion	UNKNOWN LIGAND

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TYR A:35 , GLU A:39 , CYS A:41 , TRP A:76 , LYS A:84	BINDING SITE FOR RESIDUE UNL A 401
2	AC2	SOFTWARE	TYR B:35 , GLU B:39 , CYS B:41 , TRP B:76 , LYS B:84	BINDING SITE FOR RESIDUE UNL B 402
3	AC3	SOFTWARE	LYS A:57 , HOH A:516 , PRO B:22 , ILE B:23 , HOH B:541	BINDING SITE FOR RESIDUE UNL B 403

(no "SS Bond" information available for 1O5U)

(no "Cis Peptide Bond" information available for 1O5U)

(no "SAP(SNP)/Variant" information available for 1O5U)

(no "PROSITE Motif" information available for 1O5U)

(no "Exon" information available for 1O5U)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:88
 aligned with Q9X0J6_THEMA | Q9X0J6 from UniProtKB/TrEMBL  Length:89

    Alignment length:88
                                    11        21        31        41        51        61        71        81        
          Q9X0J6_THEMA    2 EVKIEKPTPEKLKELSVEKWPIWEKEVSEFDWYYDTNETCYILEGKVEVTTEDGKKYVIEKGDLVTFPKGLRCRWKVLEPVRKHYNLF 89
               SCOP domains d1o5ua_ A: Hypothetical protein TM1112                                                   SCOP domains
               CATH domains 1o5uA00 A:2-89 Jelly Rolls                                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..hhhhhhhhhhhhh.eeee..eeeeee....eeeeeeeeeeeeee....eeeee...eeee....eeeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                  1o5u A  2 EVKIEKPTPEKLKELSVEKWPIWEKEVSEFDWYYDTNETCYILEGKVEVTTEDGKKYVIEKGDLVTFPKGLRCRWKVLEPVRKHYNLF 89
                                    11        21        31        41        51        61        71        81

Chain B from PDB  Type:PROTEIN  Length:88
 aligned with Q9X0J6_THEMA | Q9X0J6 from UniProtKB/TrEMBL  Length:89

    Alignment length:88
                                    11        21        31        41        51        61        71        81        
          Q9X0J6_THEMA    2 EVKIEKPTPEKLKELSVEKWPIWEKEVSEFDWYYDTNETCYILEGKVEVTTEDGKKYVIEKGDLVTFPKGLRCRWKVLEPVRKHYNLF 89
               SCOP domains d1o5ub_ B: Hypothetical protein TM1112                                                   SCOP domains
               CATH domains 1o5uB00 B:2-89 Jelly Rolls                                                               CATH domains
           Pfam domains (1) -----------Cupin_3-1o5uB01 B:13-86                                                   --- Pfam domains (1)
           Pfam domains (2) -----------Cupin_3-1o5uB02 B:13-86                                                   --- Pfam domains (2)
         Sec.struct. author ..eee..hhhhhhhhhhhhh.eeee..eeeeee....eeeeeeeeeeeeee....eeeee...eeee....eeeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                  1o5u B  2 EVKIEKPTPEKLKELSVEKWPIWEKEVSEFDWYYDTNETCYILEGKVEVTTEDGKKYVIEKGDLVTFPKGLRCRWKVLEPVRKHYNLF 89
                                    11        21        31        41        51        61        71        81

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Double-stranded beta-helix (580)

Superfamily: RmlC-like cupins (220)

Family: Hypothetical protein TM1112 (3)

Protein domain: Hypothetical protein TM1112 (3)

Thermotoga maritima [TaxId: 2336] (3)

1a	d1o5ua_	A:
1b	d1o5ub_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Jelly Rolls (1293)

Homologous Superfamily: Jelly Rolls (177)

Thermotoga maritima. Organism_taxid: 2336. (6)

1a	1o5uA00	A:2-89
1b	1o5uB00	B:2-89

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Cupin (179)

Family: Cupin_3 (5)

Thermotoga maritima (3)

1a	Cupin_3-1o5uB01	B:13-86
1b	Cupin_3-1o5uB02	B:13-86

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