Chain A from PDB Type:PROTEIN Length:309
aligned with CAPSD_NODAM | P12871 from UniProtKB/Swiss-Prot Length:399
Alignment length:309
56 66 76 86 96 106 116 126 136 146 156 166 176 186 196 206 216 226 236 246 256 266 276 286 296 306 316 326 336 346
CAPSD_NODAM 47 NMLKMSAPGLDFLKCAFASPDFSTDPGKGIPDKFQGLVLPKKHCLTQSITFTPGKQTMLLVAPIPGIACLKAEANVGASFSGVPLASVEFPGFDQLFGTSATDTAANVTAFRYASMAAGVYPTSNLMQFAGSIQVYKIPLKQVLNSYSQTVATVPPTNLAQNTIAIDGLEALDALPNNNYSGSFIEGCYSQSVCNEPEFEFHPIMEGYASVPPANVTNAQASMFTNLTFSGARYTGLGDMDAIAILVTTPTGAVNTAVLKVWACVEYRPNPNSTLYEFARESPANDEYALAAYRKIARDIPIAVACKDN 355
SCOP domains d1nova_ A: Alphanodavirus capsid protein SCOP domains
CATH domains 1novA00 A:55-363 [code=2.60.120.20, no name defined] CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ......hhhhhhhhhhh.hhh.................eeeeeeeeeeeee...eeeeeee.....eeeeeeeee..........eeee...hhhh...........eeeeee...eeeeee.........eeeeeee...eeeeeeeeee.....eeeeeeeeee..hhhhh......eeee.....eee..................................................eeeeeeee.....eeeeeeeeeeeeeee.................hhhhhhhhhhhhh.......... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1nov A 55 NMLKMSAPGLDFLKCAFASPDFSTDPGKGIPDKFQGLVLPKKHCLTQSITFTPGKQTMLLVAPIPGIACLKAEANVGASFSGVPLASVEFPGFDQLFGTSATDTAANVTAFRYASMAAGVYPTSNLMQFAGSIQVYKIPLKQVLNSYSQTVATVPPTNLAQNTIAIDGLEALDALPNNNYSGSFIEGCYSQSVCNEPEFEFHPIMEGYASVPPANVTNAQASMFTNLTFSGARYTGLGDMDAIAILVTTPTGAVNTAVLKVWACVEYRPNPNSTLYEFARESPANDEYALAAYRKIARDIPIAVACKDN 363
64 74 84 94 104 114 124 135 145 155 165 175 185 195 205|||| ||211 221 231 241 251 261 271 281| 294 304 314 324 334 344 354
133| 206||| || 281|
135 501|| || 285
207| ||
502 ||
504|
208
Chain B from PDB Type:PROTEIN Length:309
aligned with CAPSD_NODAM | P12871 from UniProtKB/Swiss-Prot Length:399
Alignment length:309
56 66 76 86 96 106 116 126 136 146 156 166 176 186 196 206 216 226 236 246 256 266 276 286 296 306 316 326 336 346
CAPSD_NODAM 47 NMLKMSAPGLDFLKCAFASPDFSTDPGKGIPDKFQGLVLPKKHCLTQSITFTPGKQTMLLVAPIPGIACLKAEANVGASFSGVPLASVEFPGFDQLFGTSATDTAANVTAFRYASMAAGVYPTSNLMQFAGSIQVYKIPLKQVLNSYSQTVATVPPTNLAQNTIAIDGLEALDALPNNNYSGSFIEGCYSQSVCNEPEFEFHPIMEGYASVPPANVTNAQASMFTNLTFSGARYTGLGDMDAIAILVTTPTGAVNTAVLKVWACVEYRPNPNSTLYEFARESPANDEYALAAYRKIARDIPIAVACKDN 355
SCOP domains d1novb_ B: Alphanodavirus capsid protein SCOP domains
CATH domains 1novB00 B:55-363 [code=2.60.120.20, no name defined] CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ......hhhhhhhhhh......................eeeeeeeeeeeee...eeeeeee.....eeeeeeeee..........eeee....hhhh......hhh.eeeeee..eeeeeee.........eeeeeee..eeeeeeeeeee.....eeeeeeeeeee.hhhhh......eeee.....eeee.................................................eeeeeeee.....eeeeeeeeeeeeeee....hhhhh........hhhhhhhhhhhh........... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1nov B 55 NMLKMSAPGLDFLKCAFASPDFSTDPGKGIPDKFQGLVLPKKHCLTQSITFTPGKQTMLLVAPIPGIACLKAEANVGASFSGVPLASVEFPGFDQLFGTSATDTAANVTAFRYASMAAGVYPTSNLMQFAGSIQVYKIPLKQVLNSYSQTVATVPPTNLAQNTIAIDGLEALDALPNNNYSGSFIEGCYSQSVCNEPEFEFHPIMEGYASVPPANVTNAQASMFTNLTFSGARYTGLGDMDAIAILVTTPTGAVNTAVLKVWACVEYRPNPNSTLYEFARESPANDEYALAAYRKIARDIPIAVACKDN 363
64 74 84 94 104 114 124 135 145 155 165 175 185 195 205|||| ||211 221 231 241 251 261 271 281| 294 304 314 324 334 344 354
133| 206||| || 281|
135 501|| || 285
207| ||
502 ||
504|
208
Chain C from PDB Type:PROTEIN Length:324
aligned with CAPSD_NODAM | P12871 from UniProtKB/Swiss-Prot Length:399
Alignment length:348
17 27 37 47 57 67 77 87 97 107 117 127 137 147 157 167 177 187 197 207 217 227 237 247 257 267 277 287 297 307 317 327 337 347
CAPSD_NODAM 8 RRRAAPRQQQRQQSNRASNQPRRRRARRTRRQQRMAATNNMLKMSAPGLDFLKCAFASPDFSTDPGKGIPDKFQGLVLPKKHCLTQSITFTPGKQTMLLVAPIPGIACLKAEANVGASFSGVPLASVEFPGFDQLFGTSATDTAANVTAFRYASMAAGVYPTSNLMQFAGSIQVYKIPLKQVLNSYSQTVATVPPTNLAQNTIAIDGLEALDALPNNNYSGSFIEGCYSQSVCNEPEFEFHPIMEGYASVPPANVTNAQASMFTNLTFSGARYTGLGDMDAIAILVTTPTGAVNTAVLKVWACVEYRPNPNSTLYEFARESPANDEYALAAYRKIARDIPIAVACKDN 355
SCOP domains d1novc_ C: Alphan odavirus capsid protein SCOP domains
CATH domains 1novC00 C:13-363 [code=2.60.120.20, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ...hhhhh.........------------------------....hhhhhhhhhhhhhhh.................eeeeeeeeeeeee...eeeeeee.....eeeeeeeee..........eeee...hhhh....hhhhhh.eeeeee..eeeeeee.........eeeeeee...eeeeeeeeee.....eeeeeeeeee..hhhhh......eeee.....eeee.................................................eeeeeeee.....eeeeeeeeeeeeeee.....hhhh........hhhhhhhhhhhhh.......... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1nov C 13 RRRAAPRQQQRQQSNRA------------------------LKMSAPGLDFLKCAFASPDFSTDPGKGIPDKFQGLVLPKKHCLTQSITFTPGKQTMLLVAPIPGIACLKAEANVGASFSGVPLASVEFPGFDQLFGTSATDTAANVTAFRYASMAAGVYPTSNLMQFAGSIQVYKIPLKQVLNSYSQTVATVPPTNLAQNTIAIDGLEALDALPNNNYSGSFIEGCYSQSVCNEPEFEFHPIMEGYASVPPANVTNAQASMFTNLTFSGARYTGLGDMDAIAILVTTPTGAVNTAVLKVWACVEYRPNPNSTLYEFARESPANDEYALAAYRKIARDIPIAVACKDN 363
22 | - - - | 65 75 85 95 105 115 125 136 146 156 166 176 186 196 206||| || 212 222 232 242 252 262 272 285 295 305 315 325 335 345 355
29 57 133| 206||| || 281|
135 501|| || 285
207| ||
502 ||
504|
208
Chain D from PDB Type:PROTEIN Length:20
aligned with CAPSD_NODAM | P12871 from UniProtKB/Swiss-Prot Length:399
Alignment length:20
365 375
CAPSD_NODAM 356 ATFWERVRSILKSGLNFAST 375
SCOP domains -------------------- SCOP domains
CATH domains 1novD00 D:364-383 CATH domains
Pfam domains -------------------- Pfam domains
Sec.struct. author ..hhhhhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) -------------------- SAPs(SNPs)
PROSITE -------------------- PROSITE
Transcript -------------------- Transcript
1nov D 364 ATFWERVRSILKSGLNFAST 383
373 383
Chain E from PDB Type:PROTEIN Length:17
aligned with CAPSD_NODAM | P12871 from UniProtKB/Swiss-Prot Length:399
Alignment length:17
365
CAPSD_NODAM 356 ATFWERVRSILKSGLNF 372
SCOP domains ----------------- SCOP domains
CATH domains 1novE00 E:364-380 CATH domains
Pfam domains ----------------- Pfam domains
Sec.struct. author ..hhhhhhhhhhh.... Sec.struct. author
SAPs(SNPs) ----------------- SAPs(SNPs)
PROSITE ----------------- PROSITE
Transcript ----------------- Transcript
1nov E 364 ATFWERVRSILKSGLNF 380
373
Chain F from PDB Type:PROTEIN Length:17
aligned with CAPSD_NODAM | P12871 from UniProtKB/Swiss-Prot Length:399
Alignment length:17
365
CAPSD_NODAM 356 ATFWERVRSILKSGLNF 372
SCOP domains ----------------- SCOP domains
CATH domains 1novF00 F:364-380 CATH domains
Pfam domains ----------------- Pfam domains
Sec.struct. author ..hhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ----------------- SAPs(SNPs)
PROSITE ----------------- PROSITE
Transcript ----------------- Transcript
1nov F 364 ATFWERVRSILKSGLNF 380
373
Legend: |
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(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |