Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)

(-) Description

Title :  STRUCTURAL GENOMICS, PROTEIN YBGI, UNKNOWN FUNCTION
 
Authors :  J. E. Ladner, G. Obmolova, A. Teplyakov, P. P. Khil, R. D. Camerini-Oter G. L. Gilliland, Structure 2 Function Project (S2F)
Date :  10 Jan 03  (Deposition) - 20 Jan 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C,D,E,F  (1x)
Biol. Unit 2:  C,D  (3x)
Biol. Unit 3:  A,B  (3x)
Biol. Unit 4:  E,F  (3x)
Keywords :  Ybgi, Hypothetical Protein, Toroidal Structure, Structure 2 Function Project, S2F, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. E. Ladner, G. Obmolova, A. Teplyakov, A. J. Howard, P. P. Khil, R. D. Camerini-Otero, G. L. Gilliland
Crystal Structure Of Escherichia Coli Protein Ybgi, A Toroidal Structure With A Dinuclear Metal Site
Bmc Struct. Biol. V. 3 7 2003
PubMed-ID: 14519207  |  Reference-DOI: 10.1186/1472-6807-3-7

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN YBGI
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDEST14
    Expression System Strain: BL21 STAR (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YBGI OR B0710 OR Z0861 OR ECS0735
    Organism Common: ,
    Organism Scientific: ESCHERICHIA COLI, ESCHERICHIA COLI O157:H7
    Organism Taxid: 562,83334

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABCDEF
Biological Unit 2 (3x):   CD  
Biological Unit 3 (3x): AB    
Biological Unit 4 (3x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 36)

Asymmetric Unit (2, 36)
No.NameCountTypeFull Name
1FE12Ligand/IonFE (III) ION
2MSE24Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 24)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
2MSE24Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 24)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
2MSE24Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 24)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
2MSE24Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 24)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
2MSE24Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:64 , HIS A:215 , GLU A:219 , FE A:302BINDING SITE FOR RESIDUE FE A 301
02AC2SOFTWAREHIS A:63 , ASP A:101 , GLU A:219 , FE A:301 , HOH A:409BINDING SITE FOR RESIDUE FE A 302
03AC3SOFTWAREHIS B:64 , HIS B:215 , GLU B:219 , FE B:302BINDING SITE FOR RESIDUE FE B 301
04AC4SOFTWAREHIS B:63 , ASP B:101 , GLU B:219 , FE B:301 , HOH B:483BINDING SITE FOR RESIDUE FE B 302
05AC5SOFTWAREHIS C:64 , HIS C:215 , GLU C:219 , FE C:302BINDING SITE FOR RESIDUE FE C 301
06AC6SOFTWAREHIS C:63 , ASP C:101 , GLU C:219 , FE C:301 , HOH C:644BINDING SITE FOR RESIDUE FE C 302
07AC7SOFTWAREHIS D:64 , HIS D:215 , GLU D:219 , FE D:302BINDING SITE FOR RESIDUE FE D 301
08AC8SOFTWAREHIS D:63 , ASP D:101 , GLU D:219 , FE D:301 , HOH D:865BINDING SITE FOR RESIDUE FE D 302
09AC9SOFTWAREHIS E:64 , HIS E:215 , GLU E:219 , FE E:302BINDING SITE FOR RESIDUE FE E 301
10BC1SOFTWAREHIS E:63 , ASP E:101 , GLU E:219 , FE E:301 , HOH E:694BINDING SITE FOR RESIDUE FE E 302
11BC2SOFTWAREHIS F:64 , HIS F:215 , GLU F:219 , FE F:302BINDING SITE FOR RESIDUE FE F 301
12BC3SOFTWAREHIS F:63 , ASP F:101 , GLU F:219 , FE F:301 , HOH F:866BINDING SITE FOR RESIDUE FE F 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1NMO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1NMO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1NMO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1NMO)

(-) Exons   (0, 0)

(no "Exon" information available for 1NMO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:247
 aligned with GCH1L_ECO57 | P0AFP8 from UniProtKB/Swiss-Prot  Length:247

    Alignment length:247
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       
          GCH1L_ECO57     1 MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
               SCOP domains d1nmoa_ A: Hypothetical protein YbgI                                                                                                                                                                                                                    SCOP domains
               CATH domains -1nmoA01 A:2-96,A:219-241 NIF3 (NGG1p interacting factor 3)-like                                --------------------------------------------------------------------------------------------------------------------------1nmoA01                ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh...........eeee.......eeeeeee.hhhhhhhhhhh...eeeeee............hhhhhhhhhhhhh..eeee.hhhhhhh...hhhhhhhhhhheeeeeeee..eeeeeeeeeehhhhhhhhhhhhhh...eee.......eeeeee....hhhhhhhhhhhh..eeee...hhhhhhhhhhh..eeee.hhhhhhhhhhhhhhhhhhhhh..eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nmo A   1 mKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGmKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVmGEIEPLVPWGELTmPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
                            |       10        20        30        40        50        60        70       |80        90       100       110       120|      130    |  140       150       160       170       180       190       200       210       220       230       240       
                            |                                                                           78-MSE                                    121-MSE       135-MSE                                                                                                            
                            1-MSE                                                                                                                                                                                                                                                  


Chain A from PDB  Type:PROTEIN  Length:247
 aligned with GCH1L_ECOL6 | P0AFP7 from UniProtKB/Swiss-Prot  Length:247

    Alignment length:247
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       
          GCH1L_ECOL6     1 MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
               SCOP domains d1nmoa_ A: Hypothetical protein YbgI                                                                                                                                                                                                                    SCOP domains
               CATH domains -1nmoA01 A:2-96,A:219-241 NIF3 (NGG1p interacting factor 3)-like                                --------------------------------------------------------------------------------------------------------------------------1nmoA01                ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh...........eeee.......eeeeeee.hhhhhhhhhhh...eeeeee............hhhhhhhhhhhhh..eeee.hhhhhhh...hhhhhhhhhhheeeeeeee..eeeeeeeeeehhhhhhhhhhhhhh...eee.......eeeeee....hhhhhhhhhhhh..eeee...hhhhhhhhhhh..eeee.hhhhhhhhhhhhhhhhhhhhh..eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nmo A   1 mKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGmKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVmGEIEPLVPWGELTmPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
                            |       10        20        30        40        50        60        70       |80        90       100       110       120|      130    |  140       150       160       170       180       190       200       210       220       230       240       
                            1-MSE                                                                       78-MSE                                    121-MSE       135-MSE                                                                                                            


Chain A from PDB  Type:PROTEIN  Length:247
 aligned with GCH1L_ECOLI | P0AFP6 from UniProtKB/Swiss-Prot  Length:247

    Alignment length:247
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       
          GCH1L_ECOLI     1 MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
               SCOP domains d1nmoa_ A: Hypothetical protein YbgI                                                                                                                                                                                                                    SCOP domains
               CATH domains -1nmoA01 A:2-96,A:219-241 NIF3 (NGG1p interacting factor 3)-like                                --------------------------------------------------------------------------------------------------------------------------1nmoA01                ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh...........eeee.......eeeeeee.hhhhhhhhhhh...eeeeee............hhhhhhhhhhhhh..eeee.hhhhhhh...hhhhhhhhhhheeeeeeee..eeeeeeeeeehhhhhhhhhhhhhh...eee.......eeeeee....hhhhhhhhhhhh..eeee...hhhhhhhhhhh..eeee.hhhhhhhhhhhhhhhhhhhhh..eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nmo A   1 mKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGmKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVmGEIEPLVPWGELTmPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
                            |       10        20        30        40        50        60        70       |80        90       100       110       120|      130    |  140       150       160       170       180       190       200       210       220       230       240       
                            1-MSE                                                                       78-MSE                                    121-MSE       135-MSE                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:247
 aligned with GCH1L_ECO57 | P0AFP8 from UniProtKB/Swiss-Prot  Length:247

    Alignment length:247
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       
          GCH1L_ECO57     1 MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
               SCOP domains d1nmob_ B: Hypothetical protein YbgI                                                                                                                                                                                                                    SCOP domains
               CATH domains -1nmoB01 B:2-96,B:219-241 NIF3 (NGG1p interacting factor 3)-like                                --------------------------------------------------------------------------------------------------------------------------1nmoB01                ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh...........eeee.......eeee....hhhhhhhhhhh...eeee..............hhhhhhhhhhhh...eeee.hhhhhhh...hhhhhhhhhhheeeeeeee..eeeeeeeeeeehhhhhhhhhhhhh...eee......eeeeeeee...hhhhhhhhhhhh..eeee...hhhhhhhhhhhh.eeee.hhhhhhhhhhhhhhhhhhhhh..eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nmo B   1 mKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGmKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVmGEIEPLVPWGELTmPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
                            |       10        20        30        40        50        60        70       |80        90       100       110       120|      130    |  140       150       160       170       180       190       200       210       220       230       240       
                            1-MSE                                                                       78-MSE                                    121-MSE       135-MSE                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:247
 aligned with GCH1L_ECOL6 | P0AFP7 from UniProtKB/Swiss-Prot  Length:247

    Alignment length:247
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       
          GCH1L_ECOL6     1 MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
               SCOP domains d1nmob_ B: Hypothetical protein YbgI                                                                                                                                                                                                                    SCOP domains
               CATH domains -1nmoB01 B:2-96,B:219-241 NIF3 (NGG1p interacting factor 3)-like                                --------------------------------------------------------------------------------------------------------------------------1nmoB01                ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh...........eeee.......eeee....hhhhhhhhhhh...eeee..............hhhhhhhhhhhh...eeee.hhhhhhh...hhhhhhhhhhheeeeeeee..eeeeeeeeeeehhhhhhhhhhhhh...eee......eeeeeeee...hhhhhhhhhhhh..eeee...hhhhhhhhhhhh.eeee.hhhhhhhhhhhhhhhhhhhhh..eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nmo B   1 mKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGmKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVmGEIEPLVPWGELTmPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
                            |       10        20        30        40        50        60        70       |80        90       100       110       120|      130    |  140       150       160       170       180       190       200       210       220       230       240       
                            1-MSE                                                                       78-MSE                                    121-MSE       135-MSE                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:247
 aligned with GCH1L_ECOLI | P0AFP6 from UniProtKB/Swiss-Prot  Length:247

    Alignment length:247
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       
          GCH1L_ECOLI     1 MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
               SCOP domains d1nmob_ B: Hypothetical protein YbgI                                                                                                                                                                                                                    SCOP domains
               CATH domains -1nmoB01 B:2-96,B:219-241 NIF3 (NGG1p interacting factor 3)-like                                --------------------------------------------------------------------------------------------------------------------------1nmoB01                ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh...........eeee.......eeee....hhhhhhhhhhh...eeee..............hhhhhhhhhhhh...eeee.hhhhhhh...hhhhhhhhhhheeeeeeee..eeeeeeeeeeehhhhhhhhhhhhh...eee......eeeeeeee...hhhhhhhhhhhh..eeee...hhhhhhhhhhhh.eeee.hhhhhhhhhhhhhhhhhhhhh..eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nmo B   1 mKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGmKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVmGEIEPLVPWGELTmPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
                            |       10        20        30        40        50        60        70       |80        90       100       110       120|      130    |  140       150       160       170       180       190       200       210       220       230       240       
                            1-MSE                                                                       78-MSE                                    121-MSE       135-MSE                                                                                                            


Chain C from PDB  Type:PROTEIN  Length:247
 aligned with GCH1L_ECO57 | P0AFP8 from UniProtKB/Swiss-Prot  Length:247

    Alignment length:247
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       
          GCH1L_ECO57     1 MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
               SCOP domains d1nmoc_ C: Hypothetical protein YbgI                                                                                                                                                                                                                    SCOP domains
               CATH domains -1nmoC01 C:2-96,C:219-241 NIF3 (NGG1p interacting factor 3)-like                                --------------------------------------------------------------------------------------------------------------------------1nmoC01                ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh......eeee.......eeeeeee.hhhhhhhhhhh...eeeeee............hhhhhhhhhhhhh..eeee.hhhhhhh...hhhhhhhhhhheeeeeeee..eeeeeeeeeeehhhhhhhhhhhhh...eee......eeeeeeee...hhhhhhhhhhhh..eeee...hhhhhhhhhhhh.eeee.hhhhhhhhhhhhhhhhhhhhh..eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nmo C   1 mKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGmKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVmGEIEPLVPWGELTmPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
                            |       10        20        30        40        50        60        70       |80        90       100       110       120|      130    |  140       150       160       170       180       190       200       210       220       230       240       
                            1-MSE                                                                       78-MSE                                    121-MSE       135-MSE                                                                                                            


Chain C from PDB  Type:PROTEIN  Length:247
 aligned with GCH1L_ECOL6 | P0AFP7 from UniProtKB/Swiss-Prot  Length:247

    Alignment length:247
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       
          GCH1L_ECOL6     1 MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
               SCOP domains d1nmoc_ C: Hypothetical protein YbgI                                                                                                                                                                                                                    SCOP domains
               CATH domains -1nmoC01 C:2-96,C:219-241 NIF3 (NGG1p interacting factor 3)-like                                --------------------------------------------------------------------------------------------------------------------------1nmoC01                ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh......eeee.......eeeeeee.hhhhhhhhhhh...eeeeee............hhhhhhhhhhhhh..eeee.hhhhhhh...hhhhhhhhhhheeeeeeee..eeeeeeeeeeehhhhhhhhhhhhh...eee......eeeeeeee...hhhhhhhhhhhh..eeee...hhhhhhhhhhhh.eeee.hhhhhhhhhhhhhhhhhhhhh..eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nmo C   1 mKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGmKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVmGEIEPLVPWGELTmPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
                            |       10        20        30        40        50        60        70       |80        90       100       110       120|      130    |  140       150       160       170       180       190       200       210       220       230       240       
                            1-MSE                                                                       78-MSE                                    121-MSE       135-MSE                                                                                                            


Chain C from PDB  Type:PROTEIN  Length:247
 aligned with GCH1L_ECOLI | P0AFP6 from UniProtKB/Swiss-Prot  Length:247

    Alignment length:247
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       
          GCH1L_ECOLI     1 MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
               SCOP domains d1nmoc_ C: Hypothetical protein YbgI                                                                                                                                                                                                                    SCOP domains
               CATH domains -1nmoC01 C:2-96,C:219-241 NIF3 (NGG1p interacting factor 3)-like                                --------------------------------------------------------------------------------------------------------------------------1nmoC01                ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh......eeee.......eeeeeee.hhhhhhhhhhh...eeeeee............hhhhhhhhhhhhh..eeee.hhhhhhh...hhhhhhhhhhheeeeeeee..eeeeeeeeeeehhhhhhhhhhhhh...eee......eeeeeeee...hhhhhhhhhhhh..eeee...hhhhhhhhhhhh.eeee.hhhhhhhhhhhhhhhhhhhhh..eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nmo C   1 mKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGmKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVmGEIEPLVPWGELTmPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
                            |       10        20        30        40        50        60        70       |80        90       100       110       120|      130    |  140       150       160       170       180       190       200       210       220       230       240       
                            1-MSE                                                                       78-MSE                                    121-MSE       135-MSE                                                                                                            


Chain D from PDB  Type:PROTEIN  Length:247
 aligned with GCH1L_ECO57 | P0AFP8 from UniProtKB/Swiss-Prot  Length:247

    Alignment length:247
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       
          GCH1L_ECO57     1 MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
               SCOP domains d1nmod_ D: Hypothetical protein YbgI                                                                                                                                                                                                                    SCOP domains
               CATH domains -1nmoD01 D:2-96,D:219-241 NIF3 (NGG1p interacting factor 3)-like                                --------------------------------------------------------------------------------------------------------------------------1nmoD01                ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh......eeee.......eeeeeee.hhhhhhhhhhh...eeeeee............hhhhhhhhhhhhh..eeee.hhhhhhh...hhhhhhhhhhheeeeeeee..eeeeeeeeeehhhhhhhhhhhhhh...eee.......eeeeeee...hhhhhhhhhhhh..eeee...hhhhhhhhhhh..eeee...hhhhhhhhhhhhhhhhhhh..eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nmo D   1 mKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGmKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVmGEIEPLVPWGELTmPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
                            |       10        20        30        40        50        60        70       |80        90       100       110       120|      130    |  140       150       160       170       180       190       200       210       220       230       240       
                            1-MSE                                                                       78-MSE                                    121-MSE       135-MSE                                                                                                            


Chain D from PDB  Type:PROTEIN  Length:247
 aligned with GCH1L_ECOL6 | P0AFP7 from UniProtKB/Swiss-Prot  Length:247

    Alignment length:247
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       
          GCH1L_ECOL6     1 MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
               SCOP domains d1nmod_ D: Hypothetical protein YbgI                                                                                                                                                                                                                    SCOP domains
               CATH domains -1nmoD01 D:2-96,D:219-241 NIF3 (NGG1p interacting factor 3)-like                                --------------------------------------------------------------------------------------------------------------------------1nmoD01                ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh......eeee.......eeeeeee.hhhhhhhhhhh...eeeeee............hhhhhhhhhhhhh..eeee.hhhhhhh...hhhhhhhhhhheeeeeeee..eeeeeeeeeehhhhhhhhhhhhhh...eee.......eeeeeee...hhhhhhhhhhhh..eeee...hhhhhhhhhhh..eeee...hhhhhhhhhhhhhhhhhhh..eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nmo D   1 mKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGmKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVmGEIEPLVPWGELTmPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
                            |       10        20        30        40        50        60        70       |80        90       100       110       120|      130    |  140       150       160       170       180       190       200       210       220       230       240       
                            1-MSE                                                                       78-MSE                                    121-MSE       135-MSE                                                                                                            


Chain D from PDB  Type:PROTEIN  Length:247
 aligned with GCH1L_ECOLI | P0AFP6 from UniProtKB/Swiss-Prot  Length:247

    Alignment length:247
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       
          GCH1L_ECOLI     1 MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
               SCOP domains d1nmod_ D: Hypothetical protein YbgI                                                                                                                                                                                                                    SCOP domains
               CATH domains -1nmoD01 D:2-96,D:219-241 NIF3 (NGG1p interacting factor 3)-like                                --------------------------------------------------------------------------------------------------------------------------1nmoD01                ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh......eeee.......eeeeeee.hhhhhhhhhhh...eeeeee............hhhhhhhhhhhhh..eeee.hhhhhhh...hhhhhhhhhhheeeeeeee..eeeeeeeeeehhhhhhhhhhhhhh...eee.......eeeeeee...hhhhhhhhhhhh..eeee...hhhhhhhhhhh..eeee...hhhhhhhhhhhhhhhhhhh..eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nmo D   1 mKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGmKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVmGEIEPLVPWGELTmPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
                            |       10        20        30        40        50        60        70       |80        90       100       110       120|      130    |  140       150       160       170       180       190       200       210       220       230       240       
                            1-MSE                                                                       78-MSE                                    121-MSE       135-MSE                                                                                                            


Chain E from PDB  Type:PROTEIN  Length:247
 aligned with GCH1L_ECO57 | P0AFP8 from UniProtKB/Swiss-Prot  Length:247

    Alignment length:247
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       
          GCH1L_ECO57     1 MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
               SCOP domains d1nmoe_ E: Hypothetical protein YbgI                                                                                                                                                                                                                    SCOP domains
               CATH domains -1nmoE01 E:2-96,E:219-241 NIF3 (NGG1p interacting factor 3)-like                                --------------------------------------------------------------------------------------------------------------------------1nmoE01                ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh...........eeee.......eeeeeee.hhhhhhhhhhhh..eeeeee...........hhhhhhhhhhhhhh..eeee.hhhhhhh...hhhhhhhhhhheeeeeeee..eeeeeeeeeehhhhhhhhhhhhhh...eee.......eeeeee....hhhhhhhhhhhh..eeee...hhhhhhhhhhhh.eeee.hhhhhhhhhhhhhhhhhhhhh..eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nmo E   1 mKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGmKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVmGEIEPLVPWGELTmPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
                            |       10        20        30        40        50        60        70       |80        90       100       110       120|      130    |  140       150       160       170       180       190       200       210       220       230       240       
                            1-MSE                                                                       78-MSE                                    121-MSE       135-MSE                                                                                                            


Chain E from PDB  Type:PROTEIN  Length:247
 aligned with GCH1L_ECOL6 | P0AFP7 from UniProtKB/Swiss-Prot  Length:247

    Alignment length:247
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       
          GCH1L_ECOL6     1 MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
               SCOP domains d1nmoe_ E: Hypothetical protein YbgI                                                                                                                                                                                                                    SCOP domains
               CATH domains -1nmoE01 E:2-96,E:219-241 NIF3 (NGG1p interacting factor 3)-like                                --------------------------------------------------------------------------------------------------------------------------1nmoE01                ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh...........eeee.......eeeeeee.hhhhhhhhhhhh..eeeeee...........hhhhhhhhhhhhhh..eeee.hhhhhhh...hhhhhhhhhhheeeeeeee..eeeeeeeeeehhhhhhhhhhhhhh...eee.......eeeeee....hhhhhhhhhhhh..eeee...hhhhhhhhhhhh.eeee.hhhhhhhhhhhhhhhhhhhhh..eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nmo E   1 mKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGmKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVmGEIEPLVPWGELTmPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
                            |       10        20        30        40        50        60        70       |80        90       100       110       120|      130    |  140       150       160       170       180       190       200       210       220       230       240       
                            1-MSE                                                                       78-MSE                                    121-MSE       135-MSE                                                                                                            


Chain E from PDB  Type:PROTEIN  Length:247
 aligned with GCH1L_ECOLI | P0AFP6 from UniProtKB/Swiss-Prot  Length:247

    Alignment length:247
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       
          GCH1L_ECOLI     1 MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
               SCOP domains d1nmoe_ E: Hypothetical protein YbgI                                                                                                                                                                                                                    SCOP domains
               CATH domains -1nmoE01 E:2-96,E:219-241 NIF3 (NGG1p interacting factor 3)-like                                --------------------------------------------------------------------------------------------------------------------------1nmoE01                ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh...........eeee.......eeeeeee.hhhhhhhhhhhh..eeeeee...........hhhhhhhhhhhhhh..eeee.hhhhhhh...hhhhhhhhhhheeeeeeee..eeeeeeeeeehhhhhhhhhhhhhh...eee.......eeeeee....hhhhhhhhhhhh..eeee...hhhhhhhhhhhh.eeee.hhhhhhhhhhhhhhhhhhhhh..eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nmo E   1 mKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGmKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVmGEIEPLVPWGELTmPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
                            |       10        20        30        40        50        60        70       |80        90       100       110       120|      130    |  140       150       160       170       180       190       200       210       220       230       240       
                            1-MSE                                                                       78-MSE                                    121-MSE       135-MSE                                                                                                            


Chain F from PDB  Type:PROTEIN  Length:247
 aligned with GCH1L_ECO57 | P0AFP8 from UniProtKB/Swiss-Prot  Length:247

    Alignment length:247
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       
          GCH1L_ECO57     1 MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
               SCOP domains d1nmof_ F: Hypothetical protein YbgI                                                                                                                                                                                                                    SCOP domains
               CATH domains -1nmoF01 F:2-96,F:219-241 NIF3 (NGG1p interacting factor 3)-like                                --------------------------------------------------------------------------------------------------------------------------1nmoF01                ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh......eeee.......eeee....hhhhhhhhhhhh..eeee.............hhhhhhhhhhhhhh..eeee.hhhhhhh...hhhhhhhhhh.eeeeeeee..eeeeeeeeeehhhhhhhhhhhhhh...eee.......eeeeee....hhhhhhhhhhhh..eeee...hhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhh..eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nmo F   1 mKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGmKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVmGEIEPLVPWGELTmPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
                            |       10        20        30        40        50        60        70       |80        90       100       110       120|      130    |  140       150       160       170       180       190       200       210       220       230       240       
                            1-MSE                                                                       78-MSE                                    121-MSE       135-MSE                                                                                                            


Chain F from PDB  Type:PROTEIN  Length:247
 aligned with GCH1L_ECOL6 | P0AFP7 from UniProtKB/Swiss-Prot  Length:247

    Alignment length:247
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       
          GCH1L_ECOL6     1 MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
               SCOP domains d1nmof_ F: Hypothetical protein YbgI                                                                                                                                                                                                                    SCOP domains
               CATH domains -1nmoF01 F:2-96,F:219-241 NIF3 (NGG1p interacting factor 3)-like                                --------------------------------------------------------------------------------------------------------------------------1nmoF01                ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh......eeee.......eeee....hhhhhhhhhhhh..eeee.............hhhhhhhhhhhhhh..eeee.hhhhhhh...hhhhhhhhhh.eeeeeeee..eeeeeeeeeehhhhhhhhhhhhhh...eee.......eeeeee....hhhhhhhhhhhh..eeee...hhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhh..eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nmo F   1 mKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGmKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVmGEIEPLVPWGELTmPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
                            |       10        20        30        40        50        60        70       |80        90       100       110       120|      130    |  140       150       160       170       180       190       200       210       220       230       240       
                            1-MSE                                                                       78-MSE                                    121-MSE       135-MSE                                                                                                            


Chain F from PDB  Type:PROTEIN  Length:247
 aligned with GCH1L_ECOLI | P0AFP6 from UniProtKB/Swiss-Prot  Length:247

    Alignment length:247
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       
          GCH1L_ECOLI     1 MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
               SCOP domains d1nmof_ F: Hypothetical protein YbgI                                                                                                                                                                                                                    SCOP domains
               CATH domains -1nmoF01 F:2-96,F:219-241 NIF3 (NGG1p interacting factor 3)-like                                --------------------------------------------------------------------------------------------------------------------------1nmoF01                ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh......eeee.......eeee....hhhhhhhhhhhh..eeee.............hhhhhhhhhhhhhh..eeee.hhhhhhh...hhhhhhhhhh.eeeeeeee..eeeeeeeeeehhhhhhhhhhhhhh...eee.......eeeeee....hhhhhhhhhhhh..eeee...hhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhh..eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nmo F   1 mKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGmKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVmGEIEPLVPWGELTmPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA 247
                            |       10        20        30        40        50        60        70       |80        90       100       110       120|      130    |  140       150       160       170       180       190       200       210       220       230       240       
                            1-MSE                                                                       78-MSE                                    121-MSE       135-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1NMO)

(-) Gene Ontology  (6, 12)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (GCH1L_ECOL6 | P0AFP7)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0006281    DNA repair    The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
    GO:0006974    cellular response to DNA damage stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.

Chain A,B,C,D,E,F   (GCH1L_ECO57 | P0AFP8)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0006281    DNA repair    The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
    GO:0006974    cellular response to DNA damage stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.

Chain A,B,C,D,E,F   (GCH1L_ECOLI | P0AFP6)
molecular function
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0006281    DNA repair    The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
    GO:0006974    cellular response to DNA damage stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
    GO:0010212    response to ionizing radiation    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ionizing radiation stimulus. Ionizing radiation is radiation with sufficient energy to remove electrons from atoms and may arise from spontaneous decay of unstable isotopes, resulting in alpha and beta particles and gamma rays. Ionizing radiation also includes X-rays.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    FE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1nmo)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1nmo
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  GCH1L_ECO57 | P0AFP8
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  GCH1L_ECOL6 | P0AFP7
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  GCH1L_ECOLI | P0AFP6
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  GCH1L_ECO57 | P0AFP8
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  GCH1L_ECOL6 | P0AFP7
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  GCH1L_ECOLI | P0AFP6
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GCH1L_ECO57 | P0AFP8: 1nmp
        GCH1L_ECOL6 | P0AFP7: 1nmp
        GCH1L_ECOLI | P0AFP6: 1nmp

(-) Related Entries Specified in the PDB File

ybgi