Chain A from PDB Type:PROTEIN Length:203
SCOP domains d1nfda1 A:1-117 T-cell antigen receptor d1nfda2 A:118-213 T-cell antigen receptor SCOP domains
CATH domains 1nfdA01 A:1-116 Immunoglobulins 1nfdA02 A:117-213 Immunoglobulins CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeee............eee.eeee....eeeeeeeee.....eeeeeee....eeee...eeeeee....eeeeee....hhh.eeeeeeeee...........eee...........eeeee........eeeeee.....................eeee......eeee.eeee......hhhh............... Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1nfd A 1 DSVTQTEGLVTVTEGLPVKLNCTYQTTYLTIAFFWYVQYLNEAPQVLLKSSTDNKRTEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALSEGGNYKYVFGAGTRLKVIAHIQNPEPAVYQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFITDKTVLDMKAMDSKSNGAIAWSNQTSFTCQDIFKETNATYPSSDVPC 213
10 20 30| 39 49 59| 70 80 90 || 104 114 124 || 136 146 156 166 176 186 196 || 210
30A 59| 94| 129| 198|
61 99 132 203
Chain B from PDB Type:PROTEIN Length:239
aligned with TCB1_MOUSE | P01852 from UniProtKB/Swiss-Prot Length:173
Alignment length:239
1
- - - - - - - - - - - | 8 18 28 38 48 58 68 78 88 98 108 118
TCB1_MOUSE - ----------------------------------------------------------------------------------------------------------------EDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSEEDKWPEGSPKPVTQNISAEAWGRADC 127
SCOP domains d1nfdb1 B:1-117 T-cell antigen receptor d1nfdb2 B:118-247 T-cell antigen receptor SCOP domains
CATH domains --1nfdB01 B:3-117 Immunoglobulins 1nfdB02 B:118-246 Immunoglobulins - CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....eee..eeeee.....eeeee......eeeeee.......eeeeeee...eeee................eeee.....hhh.eee.eeee............eeeeee..hhh....eeeee...hhhhhhh.eeeeeeeeeee....eeeeeee........eee....eeee..eeeeeeeeeeehhhhh.....eeeeeee..................eeeeeee...... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H--------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1nfd B 1 DSGVVQSPRHIIKEKGGRSVLTCIPISGHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSEEDKWPEGSPKPVTQNISAEAWGRADC 247
10 20 30 40 50 60 || 71 81 91 105 115 | 124 134 144 154 164 174 187| 198 208 218 228 238
62| 100| 116A 182|||
64 105 186||
187|
189
Chain C from PDB Type:PROTEIN Length:203
SCOP domains d1nfdc1 C:1-117 T-cell antigen receptor d1nfdc2 C:118-213 T-cell antigen receptor SCOP domains
CATH domains 1nfdC01 C:1-116 Immunoglobulins 1nfdC02 C:117-213 Immunoglobulins CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..........eee....eee.........eeeeeeeeee....eeeeeee........................eee....hhh.eeeeeeeee..............eee........eee..........eeeeee...............eee...eee........eeeeeeee......hhhh............... Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1nfd C 1 DSVTQTEGLVTVTEGLPVKLNCTYQTTYLTIAFFWYVQYLNEAPQVLLKSSTDNKRTEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALSEGGNYKYVFGAGTRLKVIAHIQNPEPAVYQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFITDKTVLDMKAMDSKSNGAIAWSNQTSFTCQDIFKETNATYPSSDVPC 213
10 20 30| 39 49 59| 70 80 90 || 104 114 124 || 136 146 156 166 176 186 196 || 210
30A 59| 94| 129| 198|
61 99 132 203
Chain D from PDB Type:PROTEIN Length:239
aligned with TCB1_MOUSE | P01852 from UniProtKB/Swiss-Prot Length:173
Alignment length:239
1
- - - - - - - - - - - | 8 18 28 38 48 58 68 78 88 98 108 118
TCB1_MOUSE - ----------------------------------------------------------------------------------------------------------------EDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSEEDKWPEGSPKPVTQNISAEAWGRADC 127
SCOP domains d1nfdd1 D:1-117 T-cell antigen receptor d1nfdd2 D:118-247 T-cell antigen receptor SCOP domains
CATH domains --1nfdD01 D:3-117 Immunoglobulins 1nfdD02 D:118-246 Immunoglobulins - CATH domains
Pfam domains (1) ------------------------------------------------------------------------------------------------------------------------------C1-set-1nfdD01 D:131-224 ----------------------- Pfam domains (1)
Pfam domains (2) ------------------------------------------------------------------------------------------------------------------------------C1-set-1nfdD02 D:131-224 ----------------------- Pfam domains (2)
Sec.struct. author ....eee..eeeee...eeeeeee......eeeeeee.....eeeeeeee..............eeee.....eeeeee...hhh.eeeeeeee............eeeeee..hhh............hhhhhh..eeeeeeee........eeeeee..eee...eee.............eeeeeeeehhhhh.....eeeeeee..................eeeeeee...... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H--------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1nfd D 1 DSGVVQSPRHIIKEKGGRSVLTCIPISGHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSEEDKWPEGSPKPVTQNISAEAWGRADC 247
10 20 30 40 50 60 || 71 81 91 105 115 | 124 134 144 154 164 174 187| 198 208 218 228 238
62| 100| 116A 182|||
64 105 186||
187|
189
Chain E from PDB Type:PROTEIN Length:212
SCOP domains d1nfde1 E:2-107 Immunoglobulin light chain lambda variable domain, VL-lambda d1nfde2 E:108-215 Immunoglobulin light chain lambda constant domain, CL-lambda SCOP domains
CATH domains 1nfdE01 E:2-107 Immunoglobulins 1nfdE02 E:108-215 Immunoglobulins CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..eee..eeeee......eeeee..hhh...eeeee.....eeeee.............eeeeee..eeeeee....hhh..eeeeeeee....eeee....eeeee.......eee.....hhhhhh......eeeeee.....eeeeee..eee...............eeeee.....hhhhh....eeeeee.........eee.... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1nfd E 2 YELIQPSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVEKSLSPAECL 215
|12 22 32 42 52 62 72 82 92 || 100 |109 119 129 139 149 159 171 181 191 203 213
9| 95A| 106A 167| 200|
11 95B 170 203
Chain F from PDB Type:PROTEIN Length:222
SCOP domains d1nfdf1 F:1-114 Immunoglobulin heavy chain variable domain, VH d1nfdf2 F:115-228 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma SCOP domains
CATH domains 1nfdF01 F:1-113 Immunoglobulins 1nfdF02 F:114-226 Immunoglobulins -- CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ..eeeee..eee....eeeeeeeee...hhheeeeeeee.....eeeeeee........eee.hhh.............eeeeeee...hhh....eeeeee.............eee.........................eee............eeeeehhh.....eee.............eeeeeehhhh.....eeeeee......eeee.... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1nfd F 1 EVYLVESGGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNRLRVDDTAIYYCTRAGRFDHFDYWGQGTMVTVSSATTTAPSVYPLAPACDSTTSTTDTVTLGCLVKGYFPEPVTVSWNSGALTSGVHTFPSVLHSGLYSLSSSVTVPSSTWPKQPITCNVAHPASSTKVDKKIEPR 228
10 20 30 40 50 ||| 57 67 77 |||84 94 |103 113 123 133 143 153|||| 168|| 179|| 191 || 203 || 214 226
52A|| 82A|| 100A 154||| 169| 180| 196| || 206| 222|
52B| 82B| 156|| 171 183 198 || 208 225
52C 82C 157| 200|
162 202
Chain G from PDB Type:PROTEIN Length:212
SCOP domains d1nfdg1 G:2-107 Immunoglobulin light chain lambda variable domain, VL-lambda d1nfdg2 G:108-215 Immunoglobulin light chain lambda constant domain, CL-lambda SCOP domains
CATH domains 1nfdG01 G:2-107 Immunoglobulins 1nfdG02 G:108-215 Immunoglobulins CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .......eeeee....eeeeee........eeeeee.....eeeee.............eeeeee..eeeeee....hhh..eeeeeeee....eeee....eeeee...............hhhhh.......eee....................................eee.....hhhh........................... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1nfd G 2 YELIQPSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVEKSLSPAECL 215
|12 22 32 42 52 62 72 82 92 || 100 |109 119 129 139 149 159 171 181 191 203 213
9| 95A| 106A 167| 200|
11 95B 170 203
Chain H from PDB Type:PROTEIN Length:222
SCOP domains d1nfdh1 H:1-114 Immunoglobulin heavy chain variable domain, VH d1nfdh2 H:115-228 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma SCOP domains
CATH domains 1nfdH01 H:1-113 Immunoglobulins 1nfdH02 H:114-226 Immunoglobulins -- CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ..eeeee..........eeeeeeee...hhh.eeeeeee.....eeeeeee........eee.hhh...eeeeee....eeeeee....hhh....eeeee.........................eeeeee...........eeeeeeeeeee.....eeeehhh.....eee.........eeeeeeeeee..........eeee............... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1nfd H 1 EVYLVESGGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNRLRVDDTAIYYCTRAGRFDHFDYWGQGTMVTVSSATTTAPSVYPLAPACDSTTSTTDTVTLGCLVKGYFPEPVTVSWNSGALTSGVHTFPSVLHSGLYSLSSSVTVPSSTWPKQPITCNVAHPASSTKVDKKIEPR 228
10 20 30 40 50 ||| 57 67 77 |||84 94 |103 113 123 133 143 153|||| 168|| 179|| 191 || 203 || 214 226
52A|| 82A|| 100A 154||| 169| 180| 196| || 206| 222|
52B| 82B| 156|| 171 183 198 || 208 225
52C 82C 157| 200|
162 202
Legend: |
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(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |