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Sequence, Chains, Asymmetric and Biological Units

Title AN ALPHA-BETA T CELL RECEPTOR (TCR) HETERODIMER IN COMPLEX W ANTI-TCR FAB FRAGMENT DERIVED FROM A MITOGENIC ANTIBODY
Keywords COMPLEX (IMMUNORECEPTOR-IMMUNOGLOBULIN), COMPLEX (IMMUNORECE IMMUNOGLOBULIN) COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1NFD     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   N15 ALPHA-BETA T-CELL RECEPTOR  A 203 1589 0
2  Protein   N15 ALPHA-BETA T-CELL RECEPTOR  B 239 1926 0
3  Protein   N15 ALPHA-BETA T-CELL RECEPTOR  C 203 1589 0
4  Protein   N15 ALPHA-BETA T-CELL RECEPTOR  D 239 1926 0
5  Protein   H57 FAB  E 212 1618 0
6  Protein   H57 FAB  F 222 1711 0
7  Protein   H57 FAB  G 212 1618 0
8  Protein   H57 FAB  H 222 1711 0
9  Ligand   N15 ALPHA-BETA T-CELL RECEPTOR  A 3 0 42
10  Ligand   N15 ALPHA-BETA T-CELL RECEPTOR  B 4 0 56
11  Ligand   N15 ALPHA-BETA T-CELL RECEPTOR  C 3 0 42
12  Ligand   N15 ALPHA-BETA T-CELL RECEPTOR  D 4 0 56
total       1766 13688 196

Proteins
Unit 1 ASP1 SER2 VAL3 THR4 GLN5 THR6 GLU7 GLY8 LEU9 VAL10 THR11 VAL12 THR13 GLU14 GLY15 LEU16 PRO17 VAL18 LYS19 LEU20 ASN21 CYS22 THR23 TYR24 GLN25 THR26 THR27 TYR28 LEU29 THR30 ILE30A ALA31 PHE32 PHE33 TRP34 TYR35 VAL36 GLN37 TYR38 LEU39 ASN40 GLU41 ALA42 PRO43 GLN44 VAL45 LEU46 LEU47 LYS48 SER49 SER50 THR51 ASP52 ASN53 LYS54 ARG55 THR56 GLU57 HIS58 GLN59 GLY61 PHE62 HIS63 ALA64 THR65 LEU66 HIS67 LYS68 SER69 SER70 SER71 SER72 PHE73 HIS74 LEU75 GLN76 LYS77 SER78 SER79 ALA80 GLN81 LEU82 SER83 ASP84 SER85 ALA86 LEU87 TYR88 TYR89 CYS90 ALA91 LEU92 SER93 GLU94 GLY99 GLY100 ASN101 TYR102 LYS103 TYR104 VAL105 PHE106 GLY107 ALA108 GLY109 THR110 ARG111 LEU112 LYS113 VAL114 ILE115 ALA116 HIS117 ILE118 GLN119 ASN120 PRO121 GLU122 PRO123 ALA124 VAL125 TYR126 GLN127 LEU128 LYS129 ASP132 PRO133 ARG134 SER135 GLN136 ASP137 SER138 THR139 LEU140 CYS141 LEU142 PHE143 THR144 ASP145 PHE146 ASP147 SER148 GLN149 ILE150 ASN151 VAL152 PRO153 LYS154 THR155 MET156 GLU157 SER158 GLY159 THR160 PHE161 ILE162 THR163 ASP164 LYS165 THR166 VAL167 LEU168 ASP169 MET170 LYS171 ALA172 MET173 ASP174 SER175 LYS176 SER177 ASN178 GLY179 ALA180 ILE181 ALA182 TRP183 SER184 ASN185 GLN186 THR187 SER188 PHE189 THR190 CYS191 GLN192 ASP193 ILE194 PHE195 LYS196 GLU197 THR198 ASN203 ALA204 THR205 TYR206 PRO207 SER208 SER209 ASP210 VAL211 PRO212 CYS213
Unit 2 ASP1 SER2 GLY3 VAL4 VAL5 GLN6 SER7 PRO8 ARG9 HIS10 ILE11 ILE12 LYS13 GLU14 LYS15 GLY16 GLY17 ARG18 SER19 VAL20 LEU21 THR22 CYS23 ILE24 PRO25 ILE26 SER27 GLY28 HIS29 SER30 ASN31 VAL32 VAL33 TRP34 TYR35 GLN36 GLN37 THR38 LEU39 GLY40 LYS41 GLU42 LEU43 LYS44 PHE45 LEU46 ILE47 GLN48 HIS49 TYR50 GLU51 LYS52 VAL53 GLU54 ARG55 ASP56 LYS57 GLY58 PHE59 LEU60 PRO61 SER62 ARG64 PHE65 SER66 VAL67 GLN68 GLN69 PHE70 ASP71 ASP72 TYR73 HIS74 SER75 GLU76 MET77 ASN78 MET79 SER80 ALA81 LEU82 GLU83 LEU84 GLU85 ASP86 SER87 ALA88 MET89 TYR90 PHE91 CYS92 ALA93 SER94 SER95 LEU96 ARG97 TRP98 GLY99 ASP100 GLU105 GLN106 TYR107 PHE108 GLY109 PRO110 GLY111 THR112 ARG113 LEU114 THR115 VAL116 LEU116A GLU117 ASP118 LEU119 ARG120 ASN121 VAL122 THR123 PRO124 PRO125 LYS126 VAL127 SER128 LEU129 PHE130 GLU131 PRO132 SER133 LYS134 ALA135 GLU136 ILE137 ALA138 ASN139 LYS140 GLN141 LYS142 ALA143 THR144 LEU145 VAL146 CYS147 LEU148 ALA149 ARG150 GLY151 PHE152 PHE153 PRO154 ASP155 HIS156 VAL157 GLU158 LEU159 SER160 TRP161 TRP162 VAL163 ASN164 GLY165 LYS166 GLU167 VAL168 HIS169 SER170 GLY171 VAL172 SER173 THR174 ASP175 PRO176 GLN177 ALA178 TYR179 LYS180 GLU181 SER182 ASN186 TYR187 SER189 TYR190 SER191 LEU192 SER193 SER194 ARG195 LEU196 ARG197 VAL198 SER199 ALA200 THR201 PHE202 TRP203 HIS204 ASN205 PRO206 ARG207 ASN208 HIS209 PHE210 ARG211 CYS212 GLN213 VAL214 GLN215 PHE216 HIS217 GLY218 LEU219 SER220 GLU221 GLU222 ASP223 LYS224 TRP225 PRO226 GLU227 GLY228 SER229 PRO230 LYS231 PRO232 VAL233 THR234 GLN235 ASN236 ILE237 SER238 ALA239 GLU240 ALA241 TRP242 GLY243 ARG244 ALA245 ASP246 CYS247
Unit 3 ASP1 SER2 VAL3 THR4 GLN5 THR6 GLU7 GLY8 LEU9 VAL10 THR11 VAL12 THR13 GLU14 GLY15 LEU16 PRO17 VAL18 LYS19 LEU20 ASN21 CYS22 THR23 TYR24 GLN25 THR26 THR27 TYR28 LEU29 THR30 ILE30A ALA31 PHE32 PHE33 TRP34 TYR35 VAL36 GLN37 TYR38 LEU39 ASN40 GLU41 ALA42 PRO43 GLN44 VAL45 LEU46 LEU47 LYS48 SER49 SER50 THR51 ASP52 ASN53 LYS54 ARG55 THR56 GLU57 HIS58 GLN59 GLY61 PHE62 HIS63 ALA64 THR65 LEU66 HIS67 LYS68 SER69 SER70 SER71 SER72 PHE73 HIS74 LEU75 GLN76 LYS77 SER78 SER79 ALA80 GLN81 LEU82 SER83 ASP84 SER85 ALA86 LEU87 TYR88 TYR89 CYS90 ALA91 LEU92 SER93 GLU94 GLY99 GLY100 ASN101 TYR102 LYS103 TYR104 VAL105 PHE106 GLY107 ALA108 GLY109 THR110 ARG111 LEU112 LYS113 VAL114 ILE115 ALA116 HIS117 ILE118 GLN119 ASN120 PRO121 GLU122 PRO123 ALA124 VAL125 TYR126 GLN127 LEU128 LYS129 ASP132 PRO133 ARG134 SER135 GLN136 ASP137 SER138 THR139 LEU140 CYS141 LEU142 PHE143 THR144 ASP145 PHE146 ASP147 SER148 GLN149 ILE150 ASN151 VAL152 PRO153 LYS154 THR155 MET156 GLU157 SER158 GLY159 THR160 PHE161 ILE162 THR163 ASP164 LYS165 THR166 VAL167 LEU168 ASP169 MET170 LYS171 ALA172 MET173 ASP174 SER175 LYS176 SER177 ASN178 GLY179 ALA180 ILE181 ALA182 TRP183 SER184 ASN185 GLN186 THR187 SER188 PHE189 THR190 CYS191 GLN192 ASP193 ILE194 PHE195 LYS196 GLU197 THR198 ASN203 ALA204 THR205 TYR206 PRO207 SER208 SER209 ASP210 VAL211 PRO212 CYS213
Unit 4 ASP1 SER2 GLY3 VAL4 VAL5 GLN6 SER7 PRO8 ARG9 HIS10 ILE11 ILE12 LYS13 GLU14 LYS15 GLY16 GLY17 ARG18 SER19 VAL20 LEU21 THR22 CYS23 ILE24 PRO25 ILE26 SER27 GLY28 HIS29 SER30 ASN31 VAL32 VAL33 TRP34 TYR35 GLN36 GLN37 THR38 LEU39 GLY40 LYS41 GLU42 LEU43 LYS44 PHE45 LEU46 ILE47 GLN48 HIS49 TYR50 GLU51 LYS52 VAL53 GLU54 ARG55 ASP56 LYS57 GLY58 PHE59 LEU60 PRO61 SER62 ARG64 PHE65 SER66 VAL67 GLN68 GLN69 PHE70 ASP71 ASP72 TYR73 HIS74 SER75 GLU76 MET77 ASN78 MET79 SER80 ALA81 LEU82 GLU83 LEU84 GLU85 ASP86 SER87 ALA88 MET89 TYR90 PHE91 CYS92 ALA93 SER94 SER95 LEU96 ARG97 TRP98 GLY99 ASP100 GLU105 GLN106 TYR107 PHE108 GLY109 PRO110 GLY111 THR112 ARG113 LEU114 THR115 VAL116 LEU116A GLU117 ASP118 LEU119 ARG120 ASN121 VAL122 THR123 PRO124 PRO125 LYS126 VAL127 SER128 LEU129 PHE130 GLU131 PRO132 SER133 LYS134 ALA135 GLU136 ILE137 ALA138 ASN139 LYS140 GLN141 LYS142 ALA143 THR144 LEU145 VAL146 CYS147 LEU148 ALA149 ARG150 GLY151 PHE152 PHE153 PRO154 ASP155 HIS156 VAL157 GLU158 LEU159 SER160 TRP161 TRP162 VAL163 ASN164 GLY165 LYS166 GLU167 VAL168 HIS169 SER170 GLY171 VAL172 SER173 THR174 ASP175 PRO176 GLN177 ALA178 TYR179 LYS180 GLU181 SER182 ASN186 TYR187 SER189 TYR190 SER191 LEU192 SER193 SER194 ARG195 LEU196 ARG197 VAL198 SER199 ALA200 THR201 PHE202 TRP203 HIS204 ASN205 PRO206 ARG207 ASN208 HIS209 PHE210 ARG211 CYS212 GLN213 VAL214 GLN215 PHE216 HIS217 GLY218 LEU219 SER220 GLU221 GLU222 ASP223 LYS224 TRP225 PRO226 GLU227 GLY228 SER229 PRO230 LYS231 PRO232 VAL233 THR234 GLN235 ASN236 ILE237 SER238 ALA239 GLU240 ALA241 TRP242 GLY243 ARG244 ALA245 ASP246 CYS247
Unit 5 TYR2 GLU3 LEU4 ILE5 GLN6 PRO7 SER8 SER9 ALA11 SER12 VAL13 THR14 VAL15 GLY16 GLU17 THR18 VAL19 LYS20 ILE21 THR22 CYS23 SER24 GLY25 ASP26 GLN27 LEU28 PRO29 LYS30 ASN31 PHE32 ALA33 TYR34 TRP35 PHE36 GLN37 GLN38 LYS39 SER40 ASP41 LYS42 ASN43 ILE44 LEU45 LEU46 LEU47 ILE48 TYR49 MET50 ASP51 ASN52 LYS53 ARG54 PRO55 SER56 GLY57 ILE58 PRO59 GLU60 ARG61 PHE62 SER63 GLY64 SER65 THR66 SER67 GLY68 THR69 THR70 ALA71 THR72 LEU73 THR74 ILE75 SER76 GLY77 ALA78 GLN79 PRO80 GLU81 ASP82 GLU83 ALA84 ALA85 TYR86 TYR87 CYS88 LEU89 SER90 SER91 TYR92 GLY93 ASP94 ASN95 ASN95A ASP95B LEU96 VAL97 PHE98 GLY99 SER100 GLY101 THR102 GLN103 LEU104 THR105 VAL106 LEU106A ARG107 GLY108 PRO109 LYS110 SER111 SER112 PRO113 LYS114 VAL115 THR116 VAL117 PHE118 PRO119 PRO120 SER121 PRO122 GLU123 GLU124 LEU125 ARG126 THR127 ASN128 LYS129 ALA130 THR131 LEU132 VAL133 CYS134 LEU135 VAL136 ASN137 ASP138 PHE139 TYR140 PRO141 GLY142 SER143 ALA144 THR145 VAL146 THR147 TRP148 LYS149 ALA150 ASN151 GLY152 ALA153 THR154 ILE155 ASN156 ASP157 GLY158 VAL159 LYS160 THR161 THR162 LYS163 PRO164 SER165 LYS166 GLN167 GLY170 GLN171 ASN172 TYR173 MET174 THR175 SER176 SER177 TYR178 LEU179 SER180 LEU181 THR182 ALA183 ASP184 GLN185 TRP186 LYS187 SER188 HIS189 ASN190 ARG191 VAL192 SER193 CYS194 GLN195 VAL196 THR197 HIS198 GLU199 GLY200 GLU203 THR204 VAL205 GLU206 LYS207 SER208 LEU209 SER210 PRO211 ALA212 GLU213 CYS214 LEU215
Unit 6 GLU1 VAL2 TYR3 LEU4 VAL5 GLU6 SER7 GLY8 GLY9 ASP10 LEU11 VAL12 GLN13 PRO14 GLY15 SER16 SER17 LEU18 LYS19 VAL20 SER21 CYS22 ALA23 ALA24 SER25 GLY26 PHE27 THR28 PHE29 SER30 ASP31 PHE32 TRP33 MET34 TYR35 TRP36 VAL37 ARG38 GLN39 ALA40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 VAL48 GLY49 ARG50 ILE51 LYS52 ASN52A ILE52B PRO52C ASN53 ASN54 TYR55 ALA56 THR57 GLU58 TYR59 ALA60 ASP61 SER62 VAL63 ARG64 GLY65 ARG66 PHE67 THR68 ILE69 SER70 ARG71 ASP72 ASP73 SER74 ARG75 ASN76 SER77 ILE78 TYR79 LEU80 GLN81 MET82 ASN82A ARG82B LEU82C ARG83 VAL84 ASP85 ASP86 THR87 ALA88 ILE89 TYR90 TYR91 CYS92 THR93 ARG94 ALA95 GLY96 ARG97 PHE98 ASP99 HIS100 PHE100A ASP101 TYR102 TRP103 GLY104 GLN105 GLY106 THR107 MET108 VAL109 THR110 VAL111 SER112 SER113 ALA114 THR115 THR116 THR117 ALA118 PRO119 SER120 VAL121 TYR122 PRO123 LEU124 ALA125 PRO126 ALA127 CYS128 ASP129 SER130 THR131 THR132 SER133 THR134 THR135 ASP136 THR137 VAL138 THR139 LEU140 GLY141 CYS142 LEU143 VAL144 LYS145 GLY146 TYR147 PHE148 PRO149 GLU150 PRO151 VAL152 THR153 VAL154 SER156 TRP157 ASN162 SER163 GLY164 ALA165 LEU166 THR167 SER168 GLY169 VAL171 HIS172 THR173 PHE174 PRO175 SER176 VAL177 LEU178 HIS179 SER180 GLY183 LEU184 TYR185 SER186 LEU187 SER188 SER189 SER190 VAL191 THR192 VAL193 PRO194 SER195 SER196 THR198 TRP199 PRO200 LYS202 GLN203 PRO204 ILE205 THR206 CYS208 ASN209 VAL210 ALA211 HIS212 PRO213 ALA214 SER215 SER216 THR217 LYS218 VAL219 ASP220 LYS221 LYS222 ILE225 GLU226 PRO227 ARG228
Unit 7 TYR2 GLU3 LEU4 ILE5 GLN6 PRO7 SER8 SER9 ALA11 SER12 VAL13 THR14 VAL15 GLY16 GLU17 THR18 VAL19 LYS20 ILE21 THR22 CYS23 SER24 GLY25 ASP26 GLN27 LEU28 PRO29 LYS30 ASN31 PHE32 ALA33 TYR34 TRP35 PHE36 GLN37 GLN38 LYS39 SER40 ASP41 LYS42 ASN43 ILE44 LEU45 LEU46 LEU47 ILE48 TYR49 MET50 ASP51 ASN52 LYS53 ARG54 PRO55 SER56 GLY57 ILE58 PRO59 GLU60 ARG61 PHE62 SER63 GLY64 SER65 THR66 SER67 GLY68 THR69 THR70 ALA71 THR72 LEU73 THR74 ILE75 SER76 GLY77 ALA78 GLN79 PRO80 GLU81 ASP82 GLU83 ALA84 ALA85 TYR86 TYR87 CYS88 LEU89 SER90 SER91 TYR92 GLY93 ASP94 ASN95 ASN95A ASP95B LEU96 VAL97 PHE98 GLY99 SER100 GLY101 THR102 GLN103 LEU104 THR105 VAL106 LEU106A ARG107 GLY108 PRO109 LYS110 SER111 SER112 PRO113 LYS114 VAL115 THR116 VAL117 PHE118 PRO119 PRO120 SER121 PRO122 GLU123 GLU124 LEU125 ARG126 THR127 ASN128 LYS129 ALA130 THR131 LEU132 VAL133 CYS134 LEU135 VAL136 ASN137 ASP138 PHE139 TYR140 PRO141 GLY142 SER143 ALA144 THR145 VAL146 THR147 TRP148 LYS149 ALA150 ASN151 GLY152 ALA153 THR154 ILE155 ASN156 ASP157 GLY158 VAL159 LYS160 THR161 THR162 LYS163 PRO164 SER165 LYS166 GLN167 GLY170 GLN171 ASN172 TYR173 MET174 THR175 SER176 SER177 TYR178 LEU179 SER180 LEU181 THR182 ALA183 ASP184 GLN185 TRP186 LYS187 SER188 HIS189 ASN190 ARG191 VAL192 SER193 CYS194 GLN195 VAL196 THR197 HIS198 GLU199 GLY200 GLU203 THR204 VAL205 GLU206 LYS207 SER208 LEU209 SER210 PRO211 ALA212 GLU213 CYS214 LEU215
Unit 8 GLU1 VAL2 TYR3 LEU4 VAL5 GLU6 SER7 GLY8 GLY9 ASP10 LEU11 VAL12 GLN13 PRO14 GLY15 SER16 SER17 LEU18 LYS19 VAL20 SER21 CYS22 ALA23 ALA24 SER25 GLY26 PHE27 THR28 PHE29 SER30 ASP31 PHE32 TRP33 MET34 TYR35 TRP36 VAL37 ARG38 GLN39 ALA40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 VAL48 GLY49 ARG50 ILE51 LYS52 ASN52A ILE52B PRO52C ASN53 ASN54 TYR55 ALA56 THR57 GLU58 TYR59 ALA60 ASP61 SER62 VAL63 ARG64 GLY65 ARG66 PHE67 THR68 ILE69 SER70 ARG71 ASP72 ASP73 SER74 ARG75 ASN76 SER77 ILE78 TYR79 LEU80 GLN81 MET82 ASN82A ARG82B LEU82C ARG83 VAL84 ASP85 ASP86 THR87 ALA88 ILE89 TYR90 TYR91 CYS92 THR93 ARG94 ALA95 GLY96 ARG97 PHE98 ASP99 HIS100 PHE100A ASP101 TYR102 TRP103 GLY104 GLN105 GLY106 THR107 MET108 VAL109 THR110 VAL111 SER112 SER113 ALA114 THR115 THR116 THR117 ALA118 PRO119 SER120 VAL121 TYR122 PRO123 LEU124 ALA125 PRO126 ALA127 CYS128 ASP129 SER130 THR131 THR132 SER133 THR134 THR135 ASP136 THR137 VAL138 THR139 LEU140 GLY141 CYS142 LEU143 VAL144 LYS145 GLY146 TYR147 PHE148 PRO149 GLU150 PRO151 VAL152 THR153 VAL154 SER156 TRP157 ASN162 SER163 GLY164 ALA165 LEU166 THR167 SER168 GLY169 VAL171 HIS172 THR173 PHE174 PRO175 SER176 VAL177 LEU178 HIS179 SER180 GLY183 LEU184 TYR185 SER186 LEU187 SER188 SER189 SER190 VAL191 THR192 VAL193 PRO194 SER195 SER196 THR198 TRP199 PRO200 LYS202 GLN203 PRO204 ILE205 THR206 CYS208 ASN209 VAL210 ALA211 HIS212 PRO213 ALA214 SER215 SER216 THR217 LYS218 VAL219 ASP220 LYS221 LYS222 ILE225 GLU226 PRO227 ARG228

Ligands
Unit 9 NAG214 NAG215 NAG216
Unit 10 NAG248 NAG249 NAG250 NAG251
Unit 11 NAG214 NAG215 NAG216
Unit 12 NAG248 NAG249 NAG250 NAG251

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany