1MR7 - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF STREPTOGRAMIN A ACETYLTRANSFERASE

Authors :   L. E. Kehoe, J. Snidwongse, P. Courvalin, J. B. Rafferty, I. A. Murray

Date :   18 Sep 02 (Deposition) - 26 Aug 03 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A,B,C,X,Y,Z
Biol. Unit 1: A,B,C  (1x)
Biol. Unit 2: X,Y,Z  (1x)

Keywords :   Left-Handed Parallel Beta-Helix Domain, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. E. Kehoe, J. Snidwongse, P. Courvalin, J. B. Rafferty, I. A. Murray
Structural Basis Of Synercid (Quinupristin-Dalfopristin) Resistance In Gram-Positive Bacterial Pathogens
J. Biol. Chem. V. 278 29963 2003
PubMed-ID: 12771141 | Reference-DOI: 10.1074/JBC.M303766200

Molecule 1 - STREPTOGRAMIN A ACETYLTRANSFERASE
	Chains	:	A, B, C, X, Y, Z
	EC Number	:	2.3.1.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	B834 (DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	ENTEROCOCCUS FAECIUM
	Organism Taxid	:	1352

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	X	Y	Z
Biological Unit 1 (1x)	:	A	B	C
Biological Unit 2 (1x)	:				X	Y	Z

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1MR7)

(no "Site" information available for 1MR7)

(no "SS Bond" information available for 1MR7)

Asymmetric Unit

No.	Residues
1	Asn A:159	-	Pro A:160
2	Asn B:159	-	Pro B:160
3	Asn C:159	-	Pro C:160
4	Asn X:159	-	Pro X:160
5	Asn Y:159	-	Pro Y:160
6	Asn Z:159	-	Pro Z:160

(no "SAP(SNP)/Variant" information available for 1MR7)

Asymmetric Unit (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HEXAPEP_TRANSFERASES	PS00101	Hexapeptide-repeat containing-transferases signature.	VATD_ENTFC	122-150	6	A:122-150 B:122-150 C:122-150 X:122-150 Y:122-150 Z:122-150

Biological Unit 1 (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HEXAPEP_TRANSFERASES	PS00101	Hexapeptide-repeat containing-transferases signature.	VATD_ENTFC	122-150	3	A:122-150 B:122-150 C:122-150 - - -

Biological Unit 2 (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HEXAPEP_TRANSFERASES	PS00101	Hexapeptide-repeat containing-transferases signature.	VATD_ENTFC	122-150	3	- - - X:122-150 Y:122-150 Z:122-150

(no "Exon" information available for 1MR7)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:203
 aligned with VATD_ENTFC | P50870 from UniProtKB/Swiss-Prot  Length:209

    Alignment length:203
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200   
           VATD_ENTFC     1 MGPNPMKMYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRFDQDTINQLLDIKWWNWPIDIINENIDKILDNSIIR 203
               SCOP domains d1mr7a_ A: Xenobiotic acetyltransferase                                                                                                                                                                     SCOP domains
               CATH domains 1mr7A00 A:1-203 Hexapeptide repeat proteins                                                                                                                                                                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeehhhhhh....eee....eee.....hhhh.ee..hhhhh..eee....ee....eee.hhhh........hhhhhh.hhhhhh.hhhhh.....eee....ee....ee....ee....ee....ee.......eeee....eeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------HEXAPEP_TRANSFERASES         ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1mr7 A   1 MGPNPMKMYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRFDQDTINQLLDIKWWNWPIDIINENIDKILDNSIIR 203
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Chain B from PDB  Type:PROTEIN  Length:203
 aligned with VATD_ENTFC | P50870 from UniProtKB/Swiss-Prot  Length:209

    Alignment length:203
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200   
           VATD_ENTFC     1 MGPNPMKMYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRFDQDTINQLLDIKWWNWPIDIINENIDKILDNSIIR 203
               SCOP domains d1mr7b_ B: Xenobiotic acetyltransferase                                                                                                                                                                     SCOP domains
               CATH domains 1mr7B00 B:1-203 Hexapeptide repeat proteins                                                                                                                                                                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeehhhhhhhh..eee....eee.....hhhh.ee..hhhhh..eee....ee....eee.hhhh........hhhhhh.hhhhhh.hhhhh.....eee....ee....ee....ee....ee....ee.......eeee....eeeee..hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------HEXAPEP_TRANSFERASES         ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1mr7 B   1 MGPNPMKMYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRFDQDTINQLLDIKWWNWPIDIINENIDKILDNSIIR 203
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Chain C from PDB  Type:PROTEIN  Length:202
 aligned with VATD_ENTFC | P50870 from UniProtKB/Swiss-Prot  Length:209

    Alignment length:203
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200   
           VATD_ENTFC     1 MGPNPMKMYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRFDQDTINQLLDIKWWNWPIDIINENIDKILDNSIIR 203
               SCOP domains d1mr7c_ C: X enobiotic acetyltransferase                                                                                                                                                                    SCOP domains
               CATH domains 1mr7C00 C:1- 203 Hexapeptide repeat proteins                                                                                                                                                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............-...eeehhhhhh....eee....eee.....hhhh.ee..hhhhh..eee....ee....eee.hhhh........hhhhhh.hhhhhh.hhhhh.....eee....ee....ee....ee....ee....ee.......eeee....eeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------HEXAPEP_TRANSFERASES         ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1mr7 C   1 MGPNPMKMYPIE-NKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRFDQDTINQLLDIKWWNWPIDIINENIDKILDNSIIR 203
                                    10 | |    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200   
                                      12 |                                                                                                                                                                                             
                                        14

Chain X from PDB  Type:PROTEIN  Length:203
 aligned with VATD_ENTFC | P50870 from UniProtKB/Swiss-Prot  Length:209

    Alignment length:203
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200   
           VATD_ENTFC     1 MGPNPMKMYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRFDQDTINQLLDIKWWNWPIDIINENIDKILDNSIIR 203
               SCOP domains d1mr7x_ X: Xenobiotic acetyltransferase                                                                                                                                                                     SCOP domains
               CATH domains 1mr7X00 X:1-203 Hexapeptide repeat proteins                                                                                                                                                                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeehhhhhh....eee....eee.....hhhh.ee..hhhhh..eee....ee....eee.hhhh........hhhhhh.hhhhhh.hhhhh.....eee....ee....ee....ee....ee....ee.......eeee....eeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------HEXAPEP_TRANSFERASES         ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1mr7 X   1 MGPNPMKMYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRFDQDTINQLLDIKWWNWPIDIINENIDKILDNSIIR 203
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Chain Y from PDB  Type:PROTEIN  Length:203
 aligned with VATD_ENTFC | P50870 from UniProtKB/Swiss-Prot  Length:209

    Alignment length:203
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200   
           VATD_ENTFC     1 MGPNPMKMYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRFDQDTINQLLDIKWWNWPIDIINENIDKILDNSIIR 203
               SCOP domains d1mr7y_ Y: Xenobiotic acetyltransferase                                                                                                                                                                     SCOP domains
               CATH domains 1mr7Y00 Y:1-203 Hexapeptide repeat proteins                                                                                                                                                                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeehhhhh.....eee....eee.....hhhh.ee..hhhhh..eee....ee....eee.hhhh........hhhhhh.hhhhhh.hhhhh.....eee....ee....ee....ee....ee....ee.......eeee....eeeee..hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------HEXAPEP_TRANSFERASES         ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1mr7 Y   1 MGPNPMKMYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRFDQDTINQLLDIKWWNWPIDIINENIDKILDNSIIR 203
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Chain Z from PDB  Type:PROTEIN  Length:203
 aligned with VATD_ENTFC | P50870 from UniProtKB/Swiss-Prot  Length:209

    Alignment length:203
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200   
           VATD_ENTFC     1 MGPNPMKMYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRFDQDTINQLLDIKWWNWPIDIINENIDKILDNSIIR 203
               SCOP domains d1mr7z_ Z: Xenobiotic acetyltransferase                                                                                                                                                                     SCOP domains
               CATH domains 1mr7Z00 Z:1-203 Hexapeptide repeat proteins                                                                                                                                                                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeehhhhh.....eee....eee.....hhhh.ee..hhhhh..eee....ee....eee.hhhh........hhhhhh.hhhhhh.hhhhh.....eee....ee....ee....ee....ee....ee.......eeee....eeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------HEXAPEP_TRANSFERASES         ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1mr7 Z   1 MGPNPMKMYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRFDQDTINQLLDIKWWNWPIDIINENIDKILDNSIIR 203
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Single-stranded left-handed beta-helix (154)

Superfamily: Trimeric LpxA-like enzymes (147)

Family: Galactoside acetyltransferase-like (21)

Protein domain: Xenobiotic acetyltransferase (10)

Enterococcus faecium, VAT(D) [TaxId: 1352] (8)

1a	d1mr7a_	A:
1b	d1mr7y_	Y:
1c	d1mr7z_	Z:
1d	d1mr7b_	B:
1e	d1mr7c_	C:
1f	d1mr7x_	X:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: 3 Solenoid (196)

Topology: UDP N-Acetylglucosamine Acyltransferase; domain 1 (90)

Homologous Superfamily: Hexapeptide repeat proteins (85)

Enterococcus faecium. Organism_taxid: 1352. (3)

1a	1mr7C00	C:1-203
1b	1mr7A00	A:1-203
1c	1mr7B00	B:1-203
1d	1mr7X00	X:1-203
1e	1mr7Y00	Y:1-203
1f	1mr7Z00	Z:1-203

(no "Pfam Domain" information available for 1MR7)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,X,Y,Z (VATD_ENTFC | P50870)

molecular function
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016746	transferase activity, transferring acyl groups	Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
biological process
	GO:0046677	response to antibiotic	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.

Asymmetric Unit
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	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 1mr7)

	Sites
(no "Sites" information available for 1mr7)

	Cis Peptide Bonds
		Asn A:159 - Pro A:160	[ RasMol ]
		Asn B:159 - Pro B:160	[ RasMol ]
		Asn C:159 - Pro C:160	[ RasMol ]
		Asn X:159 - Pro X:160	[ RasMol ]
		Asn Y:159 - Pro Y:160	[ RasMol ]
		Asn Z:159 - Pro Z:160	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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Access by PDB/NDB ID
	1mr7
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
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Access by UniProt ID/Accession number
	VATD_ENTFC \| P50870
		Comparative Protein Structure Models	:	ModBase
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	2.3.1.-
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		Disease Information	:	OMIM

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		Age Related Information	:	GenAge

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		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
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Access by UniProt ID/Accession number
	VATD_ENTFC \| P50870
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UniProtKB/Swiss-Prot
	VATD_ENTFC \| P50870	:	1khr 1kk4 1kk5 1kk6 1mr9 1mrl 3dho

1mr9	1MR9 CONTAINS CRYSTAL STRUCTURE OF THE SAME PROTEIN COMPLEXED WITH ACO
1mrl	1MRL CONTAINS CRYSTAL STRUCTURE OF THE SAME PROTEIN COMPLEXED WITH DOL

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 6)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (1, 6)

CATH Domains (1, 6)

Pfam Domains (0, 0)

Gene Ontology (3, 3)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File