1KHR - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF VAT(D) IN COMPLEX WITH VIRGINIAMYCIN AND COENZYME A

Authors :   M. Sugantino, S. L. Roderick

Date :   30 Nov 01 (Deposition) - 20 Feb 02 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C  (1x)
Biol. Unit 2: D,E,F  (1x)

Keywords :   Antibiotic Resistance, Acyltransferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Sugantino, S. L. Roderick
Crystal Structure Of Vat(D): An Acetyltransferase That Inactivates Streptogramin Group A Antibiotics.
Biochemistry V. 41 2209 2002
PubMed-ID: 11841212 | Reference-DOI: 10.1021/BI011991B
(for further references see the PDB file header)

Molecule 1 - STREPTOGRAMIN A ACETYLTRANSFERASE
	Chains	:	A, B, C, D, E, F
	EC Number	:	2.3.1.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET11A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	SATA
	Organism Scientific	:	ENTEROCOCCUS FAECIUM
	Organism Taxid	:	1352

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A	B	C
Biological Unit 2 (1x)	:				D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 9)

No.	Name	Count	Type	Full Name
1	COA	6	Ligand/Ion	COENZYME A
2	VIR	3	Ligand/Ion	VIRGINIAMYCIN M1

Biological Unit 1 (2, 5)

No.	Name	Count	Type	Full Name
1	COA	3	Ligand/Ion	COENZYME A
2	VIR	2	Ligand/Ion	VIRGINIAMYCIN M1

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	COA	3	Ligand/Ion	COENZYME A
2	VIR	1	Ligand/Ion	VIRGINIAMYCIN M1

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	VAL A:17 , TYR A:37 , ASP A:39 , COA A:301 , HOH A:3603 , ILE B:56 , ASN B:81 , ASN B:92 , LEU B:93 , PRO B:103	BINDING SITE FOR RESIDUE VIR A 401
2	AC2	SOFTWARE	TYR A:54 , ALA A:80 , ASN A:81 , HIS A:82 , ASN A:92 , LEU A:93 , PRO A:103 , TYR C:37 , ASP C:39 , COA C:303	BINDING SITE FOR RESIDUE VIR A 402
3	AC3	SOFTWARE	TYR D:37 , ASP D:39 , COA D:304 , TYR E:54 , GLY E:79 , ASN E:81 , ASN E:92 , PRO E:103 , HOH E:3622	BINDING SITE FOR RESIDUE VIR E 403
4	AC4	SOFTWARE	TRP A:121 , LYS A:124 , ALA A:141 , ALA A:142 , LEU A:155 , GLY A:157 , GLY A:158 , ILE A:164 , VIR A:401 , HOH A:3608 , ALA B:80 , MET B:84 , MET B:129 , VAL B:147	BINDING SITE FOR RESIDUE COA A 301
5	AC5	SOFTWARE	TRP B:121 , GLY B:123 , LYS B:124 , ALA B:141 , ALA B:142 , LEU B:155 , GLY B:157 , GLY B:158 , ILE B:164 , HOH B:3577 , HOH B:3612 , HIS C:82 , MET C:84 , MET C:129 , VAL C:147 , LYS C:148 , PRO C:160	BINDING SITE FOR RESIDUE COA B 302
6	AC6	SOFTWARE	HIS A:82 , MET A:84 , MET A:129 , VAL A:147 , PRO A:160 , VIR A:402 , HOH A:3607 , TRP C:121 , GLY C:123 , LYS C:124 , ALA C:141 , ALA C:142 , LEU C:155 , GLY C:157 , GLY C:158 , ILE C:164 , HOH C:3605 , HOH C:3606	BINDING SITE FOR RESIDUE COA C 303
7	AC7	SOFTWARE	GLY D:70 , TRP D:121 , ILE D:122 , GLY D:123 , LYS D:124 , ALA D:141 , ALA D:142 , LEU D:155 , GLY D:157 , GLY D:158 , ILE D:164 , HOH D:3614 , HIS E:82 , MET E:84 , MET E:129 , VAL E:147 , PRO E:160 , VIR E:403	BINDING SITE FOR RESIDUE COA D 304
8	AC8	SOFTWARE	TRP E:121 , GLY E:123 , LYS E:124 , ALA E:141 , ALA E:142 , LEU E:155 , GLY E:157 , GLY E:158 , ILE E:164 , HOH E:3557 , HOH E:3558 , HOH E:3615 , ALA F:80 , MET F:84 , VAL F:147 , LYS F:148 , PRO F:160	BINDING SITE FOR RESIDUE COA E 305
9	AC9	SOFTWARE	HIS D:82 , MET D:84 , MET D:129 , VAL D:147 , PRO D:160 , TRP F:121 , GLY F:123 , LYS F:124 , ALA F:141 , ALA F:142 , LEU F:155 , GLY F:157 , GLY F:158 , ILE F:164 , HOH F:3621	BINDING SITE FOR RESIDUE COA F 306

(no "SS Bond" information available for 1KHR)

Asymmetric Unit

No.	Residues
1	Asn A:159	-	Pro A:160
2	Asn B:159	-	Pro B:160
3	Asn C:159	-	Pro C:160
4	Asn D:159	-	Pro D:160
5	Asn E:159	-	Pro E:160
6	Asn F:159	-	Pro F:160

(no "SAP(SNP)/Variant" information available for 1KHR)

Asymmetric Unit (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HEXAPEP_TRANSFERASES	PS00101	Hexapeptide-repeat containing-transferases signature.	VATD_ENTFC	122-150	6	A:122-150 B:122-150 C:122-150 D:122-150 E:122-150 F:122-150

Biological Unit 1 (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HEXAPEP_TRANSFERASES	PS00101	Hexapeptide-repeat containing-transferases signature.	VATD_ENTFC	122-150	3	A:122-150 B:122-150 C:122-150 - - -

Biological Unit 2 (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HEXAPEP_TRANSFERASES	PS00101	Hexapeptide-repeat containing-transferases signature.	VATD_ENTFC	122-150	3	- - - D:122-150 E:122-150 F:122-150

(no "Exon" information available for 1KHR)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:206
 aligned with VATD_ENTFC | P50870 from UniProtKB/Swiss-Prot  Length:209

    Alignment length:206
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200      
           VATD_ENTFC     1 MGPNPMKMYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRFDQDTINQLLDIKWWNWPIDIINENIDKILDNSIIREVI 206
               SCOP domains d1khra_ A: Xenobiotic acetyltransferase                                                                                                                                                                        SCOP domains
               CATH domains 1khrA00 A:1-206 Hexapeptide repeat proteins                                                                                                                                                                    CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeehhhhhhh...eee....eee.....hhhh.ee..hhhhh..eee....ee....eee.hhhh........hhhhhh.hhhhhh.hhhhh.....eee....ee....ee....ee....ee....ee.......eeee....eeeee..hhhhhhhhhhhhhhhhhhhhhh.hhhhhhh.hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------HEXAPEP_TRANSFERASES         -------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1khr A   1 MGPNPMKMYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRFDQDTINQLLDIKWWNWPIDIINENIDKILDNSIIREVI 206
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Chain B from PDB  Type:PROTEIN  Length:205
 aligned with VATD_ENTFC | P50870 from UniProtKB/Swiss-Prot  Length:209

    Alignment length:205
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200     
           VATD_ENTFC     1 MGPNPMKMYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRFDQDTINQLLDIKWWNWPIDIINENIDKILDNSIIREV 205
               SCOP domains d1khrb_ B: Xenobiotic acetyltransferase                                                                                                                                                                       SCOP domains
               CATH domains 1khrB00 B:1-205 Hexapeptide repeat proteins                                                                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeehhhhhh....eee....eee.....hhhh.ee..hhhhh..eee....ee....eee.hhhh........hhhhh..hhhhhh.hhhhh.....eee....ee....ee....ee....ee....ee.......eeee....eeeee..hhhhhhhhhhhhhhhhhhhhhh.hhhhhhh.hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------HEXAPEP_TRANSFERASES         ------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1khr B   1 MGPNPMKMYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRFDQDTINQLLDIKWWNWPIDIINENIDKILDNSIIREV 205
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Chain C from PDB  Type:PROTEIN  Length:206
 aligned with VATD_ENTFC | P50870 from UniProtKB/Swiss-Prot  Length:209

    Alignment length:206
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200      
           VATD_ENTFC     1 MGPNPMKMYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRFDQDTINQLLDIKWWNWPIDIINENIDKILDNSIIREVI 206
               SCOP domains d1khrc_ C: Xenobiotic acetyltransferase                                                                                                                                                                        SCOP domains
               CATH domains 1khrC00 C:1-206 Hexapeptide repeat proteins                                                                                                                                                                    CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeehhhhhh....eee....eee.....hhhh.ee..hhhhh..eee....ee....eee.hhhh........hhhhhh..hhhhh.hhhhh.....eee....ee....ee....ee....ee....ee.......eeee....eeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------HEXAPEP_TRANSFERASES         -------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1khr C   1 MGPNPMKMYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRFDQDTINQLLDIKWWNWPIDIINENIDKILDNSIIREVI 206
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Chain D from PDB  Type:PROTEIN  Length:206
 aligned with VATD_ENTFC | P50870 from UniProtKB/Swiss-Prot  Length:209

    Alignment length:206
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200      
           VATD_ENTFC     1 MGPNPMKMYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRFDQDTINQLLDIKWWNWPIDIINENIDKILDNSIIREVI 206
               SCOP domains d1khrd_ D: Xenobiotic acetyltransferase                                                                                                                                                                        SCOP domains
               CATH domains 1khrD00 D:1-206 Hexapeptide repeat proteins                                                                                                                                                                    CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeehhhhhh....eee....eee.....hhhh.ee..hhhhh..eee....ee....eee.............hhhhhh.hhhhhh.hhhhh.....eee....ee....ee....ee....ee....ee.......eeee....eeeee..hhhhhhhhhhhhhhhhhhhhhh.hhhhhhh...hhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------HEXAPEP_TRANSFERASES         -------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1khr D   1 MGPNPMKMYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRFDQDTINQLLDIKWWNWPIDIINENIDKILDNSIIREVI 206
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Chain E from PDB  Type:PROTEIN  Length:204
 aligned with VATD_ENTFC | P50870 from UniProtKB/Swiss-Prot  Length:209

    Alignment length:204
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201    
           VATD_ENTFC     2 GPNPMKMYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRFDQDTINQLLDIKWWNWPIDIINENIDKILDNSIIREV 205
               SCOP domains d1khre_ E: Xenobiotic acetyltransferase                                                                                                                                                                      SCOP domains
               CATH domains 1khrE00 E:2-205 Hexapeptide repeat proteins                                                                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...............eeehhhhh.....eee....eee.....hhhh.ee..hhhhh..eee....ee....eee.hhhh........hhhhhh..hhhhh.hhhhh.....eee....ee....ee....ee....ee....ee.......eeee....eeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------HEXAPEP_TRANSFERASES         ------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1khr E   2 GPNPMKMYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRFDQDTINQLLDIKWWNWPIDIINENIDKILDNSIIREV 205
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201

Chain F from PDB  Type:PROTEIN  Length:206
 aligned with VATD_ENTFC | P50870 from UniProtKB/Swiss-Prot  Length:209

    Alignment length:206
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200      
           VATD_ENTFC     1 MGPNPMKMYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRFDQDTINQLLDIKWWNWPIDIINENIDKILDNSIIREVI 206
               SCOP domains d1khrf_ F: Xenobiotic acetyltransferase                                                                                                                                                                        SCOP domains
               CATH domains 1khrF00 F:1-206 Hexapeptide repeat proteins                                                                                                                                                                    CATH domains
           Pfam domains (1) ----------------------------------------------------------------------------------------------------------------Hexapep-1khrF01 F:113-148           ---------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------------------------------------------------------------------Hexapep-1khrF02 F:113-148           ---------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ----------------------------------------------------------------------------------------------------------------Hexapep-1khrF03 F:113-148           ---------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ----------------------------------------------------------------------------------------------------------------Hexapep-1khrF04 F:113-148           ---------------------------------------------------------- Pfam domains (4)
           Pfam domains (5) ----------------------------------------------------------------------------------------------------------------Hexapep-1khrF05 F:113-148           ---------------------------------------------------------- Pfam domains (5)
           Pfam domains (6) ----------------------------------------------------------------------------------------------------------------Hexapep-1khrF06 F:113-148           ---------------------------------------------------------- Pfam domains (6)
         Sec.struct. author ................eeehhhhhh....eee....eee.....hhhh.ee..hhhhh..eee....ee....eee.hhhh........hhhhhh..hhhhh.hhhhh.....eee....ee....ee....ee....ee....ee........eee....ee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------HEXAPEP_TRANSFERASES         -------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1khr F   1 MGPNPMKMYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRFDQDTINQLLDIKWWNWPIDIINENIDKILDNSIIREVI 206
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Single-stranded left-handed beta-helix (154)

Superfamily: Trimeric LpxA-like enzymes (147)

Family: Galactoside acetyltransferase-like (21)

Protein domain: Xenobiotic acetyltransferase (10)

Enterococcus faecium, VAT(D) [TaxId: 1352] (8)

1a	d1khra_	A:
1b	d1khrb_	B:
1c	d1khrc_	C:
1d	d1khrd_	D:
1e	d1khre_	E:
1f	d1khrf_	F:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: 3 Solenoid (196)

Topology: UDP N-Acetylglucosamine Acyltransferase; domain 1 (90)

Homologous Superfamily: Hexapeptide repeat proteins (85)

Enterococcus faecium. Organism_taxid: 1352. (4)

1a	1khrE00	E:2-205
1b	1khrB00	B:1-205
1c	1khrA00	A:1-206
1d	1khrC00	C:1-206
1e	1khrD00	D:1-206
1f	1khrF00	F:1-206

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: Hexapep] (52)

Family: Hexapep (52)

Enterococcus faecium (Streptococcus faecium) (6)

1a	Hexapep-1khrF01	F:113-148
1b	Hexapep-1khrF02	F:113-148
1c	Hexapep-1khrF03	F:113-148
1d	Hexapep-1khrF04	F:113-148
1e	Hexapep-1khrF05	F:113-148
1f	Hexapep-1khrF06	F:113-148

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (VATD_ENTFC | P50870)

molecular function
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016746	transferase activity, transferring acyl groups	Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
biological process
	GO:0046677	response to antibiotic	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.

Asymmetric Unit
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	Cis Peptide Bonds
		Asn A:159 - Pro A:160	[ RasMol ]
		Asn B:159 - Pro B:160	[ RasMol ]
		Asn C:159 - Pro C:160	[ RasMol ]
		Asn D:159 - Pro D:160	[ RasMol ]
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		Asn F:159 - Pro F:160	[ RasMol ]

Biological Units
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	1khr
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	VATD_ENTFC \| P50870	:	1kk4 1kk5 1kk6 1mr7 1mr9 1mrl 3dho

(no "Related Entries Specified in the PDB File" available for 1KHR)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 9)

Sites (9, 9)

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 6)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (1, 6)

CATH Domains (1, 6)

Pfam Domains (1, 6)

Gene Ontology (3, 3)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File