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(-) Description

Title :  SOLUTION STRUCTURE OF HEPCIDIN-20
 
Authors :  H. N. Hunter, D. B. Fulton, T. Ganz, H. J. Vogel
Date :  02 Jul 02  (Deposition) - 06 Nov 02  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Strand-Loop-Strand, Beta-Sheet, Hairpin Loop, Antimicrobial Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  H. N. Hunter, D. B. Fulton, T. Ganz, H. J. Vogel
The Solution Structure Of Human Hepcidin, A Peptide Hormone With Antimicrobial Activity That Is Involved In Iron Uptake And Hereditary Hemochromatosis.
J. Biol. Chem. V. 277 37597 2002
PubMed-ID: 12138110  |  Reference-DOI: 10.1074/JBC.M205305200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HEPCIDIN
    ChainsA
    EngineeredYES
    FragmentHEPCIDIN-20 (RESIDUES 65-84)
    Other DetailsTHE SEQUENCE OF THE PROTEIN IS NATURALLY FOUND IN HOMO SAPIENS. THE PROTEIN WAS CHEMICALLY SYNTHESIZED.
    SynonymLIVER-EXPRESSED ANTIMICROBIAL PEPTIDE, LEAP-1, PUTATIVE LIVER TUMOR REGRESSOR, PLTR, HEPC20
    SyntheticYES

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1M4E)

(-) Sites  (0, 0)

(no "Site" information available for 1M4E)

(-) SS Bonds  (4, 4)

NMR Structure
No.Residues
1A:2 -A:18
2A:5 -A:17
3A:6 -A:14
4A:8 -A:9

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1M4E)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (3, 3)

NMR Structure (3, 3)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_042513C70RHEPC_HUMANDisease (HFE2B)  ---AC6R
2UniProtVAR_026648G71DHEPC_HUMANDisease (HFE2B)104894696AG7D
3UniProtVAR_042514C78YHEPC_HUMANDisease (HFE2B)  ---AC14Y

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1M4E)

(-) Exons   (1, 1)

NMR Structure (1, 1)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000002223041ENSE00000862777chr19:35773410-35773570161HEPC_HUMAN1-30300--
1.2ENST000002223042ENSE00000700274chr19:35775692-3577575160HEPC_HUMAN31-50200--
1.3ENST000002223043ENSE00000862778chr19:35775841-35776046206HEPC_HUMAN51-84341A:1-2020

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:20
 aligned with HEPC_HUMAN | P81172 from UniProtKB/Swiss-Prot  Length:84

    Alignment length:20
                                    74        84
            HEPC_HUMAN   65 ICIFCCGCCHRSKCGMCCKT 84
               SCOP domains d1m4ea_ A: Hepcidin  SCOP domains
               CATH domains -------------------- CATH domains
               Pfam domains Hepcidin-1m4eA01     Pfam domains
         Sec.struct. author ..eeee.......eeee... Sec.struct. author
                 SAPs(SNPs) -----RD------Y------ SAPs(SNPs)
                    PROSITE -------------------- PROSITE
               Transcript 1 Exon 1.3  PDB: A:1-2 Transcript 1
                  1m4e A  1 ICIFCCGCCHRSKCGMCCKT 20
                                    10        20

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Peptides (792)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1M4E)

(-) Pfam Domains  (1, 1)

NMR Structure

(-) Gene Ontology  (23, 23)

NMR Structure(hide GO term definitions)
Chain A   (HEPC_HUMAN | P81172)
molecular function
    GO:0005179    hormone activity    The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects; all bind receptors and trigger some biological process.
    GO:0097690    iron channel inhibitor activity    Stops, prevents, or reduces the activity of an iron channel.
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
biological process
    GO:0006879    cellular iron ion homeostasis    Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell.
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
    GO:0050832    defense response to fungus    Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
    GO:0006955    immune response    Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
    GO:0031640    killing of cells of other organism    Any process in an organism that results in the killing of cells of another organism, including in some cases the death of the other organism. Killing here refers to the induction of death in one cell by another cell, not cell-autonomous death due to internal or other environmental conditions.
    GO:0060586    multicellular organismal iron ion homeostasis    Any process involved in the maintenance of the distribution of iron stores within tissues and organs of a multicellular organism.
    GO:1904039    negative regulation of ferrous iron export    Any process that stops, prevents or reduces the frequency, rate or extent of iron(2+) export.
    GO:1904479    negative regulation of intestinal absorption    Any process that stops, prevents or reduces the frequency, rate or extent of intestinal absorption.
    GO:0032413    negative regulation of ion transmembrane transporter activity    Any process that stops or reduces the activity of an ion transporter.
    GO:1904255    negative regulation of iron channel activity    Any process that stops, prevents or reduces the frequency, rate or extent of iron channel activity.
    GO:0000122    negative regulation of transcription from RNA polymerase II promoter    Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:1902916    positive regulation of protein polyubiquitination    Any process that activates or increases the frequency, rate or extent of protein polyubiquitination.
    GO:2000646    positive regulation of receptor catabolic process    Any process that activates or increases the frequency, rate or extent of receptor catabolic process.
    GO:0002092    positive regulation of receptor internalization    Any process that activates or increases the frequency, rate or extent of receptor internalization.
    GO:0010039    response to iron ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus.
cellular component
    GO:0045179    apical cortex    The region that lies just beneath the plasma membrane on the apical edge of a cell.
    GO:0005623    cell    The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HEPC_HUMAN | P811721m4f 2kef 3h0t 4qae

(-) Related Entries Specified in the PDB File

1m4f THE SOLUTION STRUCTURE OF HEPCIDIN-25