Chain A from PDB Type:PROTEIN Length:471
aligned with TACY_CLOP1 | Q0TUS0 from UniProtKB/Swiss-Prot Length:500
Alignment length:471
39 49 59 69 79 89 99 109 119 129 139 149 159 169 179 189 199 209 219 229 239 249 259 269 279 289 299 309 319 329 339 349 359 369 379 389 399 409 419 429 439 449 459 469 479 489 499
TACY_CLOP1 30 DITDKNQSIDSGISSLSYNRNEVLASNGDKIESFVPKEGKKAGNKFIVVERQKRSLTTSPVDISIIDSVNDRTYPGALQLADKAFVENRPTILMVKRKPININIDLPGLKGENSIKVDDPTYGKVSGAIDELVSKWNEKYSSTHTLPARTQYSESMVYSKSQISSALNVNAKVLENSLGVDFNAVANNEKKVMILAYKQIFYTVSADLPKNPSDLFDDSVTFNDLKQKGVSNEAPPLMVSNVAYGRTIYVKLETTSSSKDVQAAFKALIKNTDIKNSQQYKDIYENSSFTAVVLGGDAQEHNKVVTKDFDEIRKVIKDNATFSTKNPAYPISYTSVFLKDNSVAAVHNKTDYIETTSTEYSKGKINLDHSGAYVAQFEVAWDEVSYDKEGNEVLTHKTWDGNYQDKTAHYSTVIPLEANARNIRIKARECTGLAWEWWRDVISEYDVPLTNNINVSIWGTTLYPGSSITYN 500
SCOP domains d1m3ja_ A: Perfringolysin SCOP domains
CATH domains 1m3jA01 1m3jA02 A:54-89,A:374-390 1m3jA01 A:30-53,A:90-178,A:229-274,A:350-373 HIV-1 Reverse Transcriptase; Chain --------------------------------------------------1m3jA01 A:30-53,A:90-178,A:229-274,A:350-373 ---------------------------------------------------------------------------1m3jA01 1m3jA02 1m3jA04 A:391-500 Perfringolysin, domain 4 CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .......hhhhhhhh...hhhhhheee.........eeeee...eeeeeeeeeeeeee....ee.................hhhhhh............eeee..........eeee...hhhhhhhhhhhhhhhhhhhh....ee....eeeeee..hhhhhhhhh..hhhhhhhhh..hhhhhh....eeeeeeeeeeeeee......hhhhh.....hhhhhhhhh......eeeeeeeeeeeeeeeeeee.....hhhhhhhhhhh.hhhhhhhhhhhhhhheeeeeeee.........eee..hhhhhhhhhh...ee......eeeeeeee.........eeeeeeeeeeeeeee.eeeeeeeeee..eee..eeeeeee.....eeeeeee..............eeee...eeeeeeeeee....hhhhheeeeeeeee....eeeeeeeee...eeeeeee. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------THIOL_CYTOLY-------------------------------- PROSITE (2)
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1m3j A 30 DITDKNQSIDSGISSLSYNRNEVLASNGDKIESFVPKEGKKAGNKFIVVERQKRSLTTSPVDISIIDSVNDRTYPGALQLADKALVENRPTILMVKRKPININIDLPGLKGENSIKVDDPTYGKVSGAIDELVSKWNEKYSSTHTLPARTQYSESMVYSKSQISSALNVNAKVLENSLGVDFNAVANNEKKVMILAYKQIFYTVSADLPKNPSDLFDDSVTFNDLKQKGVSNEAPPLMVSNVAYGRTIYVKLETTSSSKDVQAAFKALIKNTDIKNSQQYKDIYENSSFTAVVLGGDAQEHNKVVTKDFDEIRKVIKDNATFSTKNPAYPISYTSVFLKDNSVAAVHNKTDYIETTSTEYSKGKINLDHSGAYVAQFEVAWDEVSYDKEGNEVLTHKTWDGNYQDKTAHYSTVIPLEANARNIRIKARECTGLAWEWWRDVISEYDVPLTNNINVSIWGTTLYPGSSITYN 500
39 49 59 69 79 89 99 109 119 129 139 149 159 169 179 189 199 209 219 229 239 249 259 269 279 289 299 309 319 329 339 349 359 369 379 389 399 409 419 429 439 449 459 469 479 489 499
Chain A from PDB Type:PROTEIN Length:471
aligned with TACY_CLOPE | P0C2E9 from UniProtKB/Swiss-Prot Length:500
Alignment length:471
39 49 59 69 79 89 99 109 119 129 139 149 159 169 179 189 199 209 219 229 239 249 259 269 279 289 299 309 319 329 339 349 359 369 379 389 399 409 419 429 439 449 459 469 479 489 499
TACY_CLOPE 30 DITDKNQSIDSGISSLSYNRNEVLASNGDKIESFVPKEGKKTGNKFIVVERQKRSLTTSPVDISIIDSVNDRTYPGALQLADKAFVENRPTILMVKRKPININIDLPGLKGENSIKVDDPTYGKVSGAIDELVSKWNEKYSSTHTLPARTQYSESMVYSKSQISSALNVNAKVLENSLGVDFNAVANNEKKVMILAYKQIFYTVSADLPKNPSDLFDDSVTFNDLKQKGVSNEAPPLMVSNVAYGRTIYVKLETTSSSKDVQAAFKALIKNTDIKNSQQYKDIYENSSFTAVVLGGDAQEHNKVVTKDFDEIRKVIKDNATFSTKNPAYPISYTSVFLKDNSVAAVHNKTDYIETTSTEYSKGKINLDHSGAYVAQFEVAWDEVSYDKEGNEVLTHKTWDGNYQDKTAHYSTVIPLEANARNIRIKARECTGLAWEWWRDVISEYDVPLTNNINVSIWGTTLYPGSSITYN 500
SCOP domains d1m3ja_ A: Perfringolysin SCOP domains
CATH domains 1m3jA01 1m3jA02 A:54-89,A:374-390 1m3jA01 A:30-53,A:90-178,A:229-274,A:350-373 HIV-1 Reverse Transcriptase; Chain --------------------------------------------------1m3jA01 A:30-53,A:90-178,A:229-274,A:350-373 ---------------------------------------------------------------------------1m3jA01 1m3jA02 1m3jA04 A:391-500 Perfringolysin, domain 4 CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .......hhhhhhhh...hhhhhheee.........eeeee...eeeeeeeeeeeeee....ee.................hhhhhh............eeee..........eeee...hhhhhhhhhhhhhhhhhhhh....ee....eeeeee..hhhhhhhhh..hhhhhhhhh..hhhhhh....eeeeeeeeeeeeee......hhhhh.....hhhhhhhhh......eeeeeeeeeeeeeeeeeee.....hhhhhhhhhhh.hhhhhhhhhhhhhhheeeeeeee.........eee..hhhhhhhhhh...ee......eeeeeeee.........eeeeeeeeeeeeeee.eeeeeeeeee..eee..eeeeeee.....eeeeeee..............eeee...eeeeeeeeee....hhhhheeeeeeeee....eeeeeeeee...eeeeeee. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------THIOL_CYTOLY-------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1m3j A 30 DITDKNQSIDSGISSLSYNRNEVLASNGDKIESFVPKEGKKAGNKFIVVERQKRSLTTSPVDISIIDSVNDRTYPGALQLADKALVENRPTILMVKRKPININIDLPGLKGENSIKVDDPTYGKVSGAIDELVSKWNEKYSSTHTLPARTQYSESMVYSKSQISSALNVNAKVLENSLGVDFNAVANNEKKVMILAYKQIFYTVSADLPKNPSDLFDDSVTFNDLKQKGVSNEAPPLMVSNVAYGRTIYVKLETTSSSKDVQAAFKALIKNTDIKNSQQYKDIYENSSFTAVVLGGDAQEHNKVVTKDFDEIRKVIKDNATFSTKNPAYPISYTSVFLKDNSVAAVHNKTDYIETTSTEYSKGKINLDHSGAYVAQFEVAWDEVSYDKEGNEVLTHKTWDGNYQDKTAHYSTVIPLEANARNIRIKARECTGLAWEWWRDVISEYDVPLTNNINVSIWGTTLYPGSSITYN 500
39 49 59 69 79 89 99 109 119 129 139 149 159 169 179 189 199 209 219 229 239 249 259 269 279 289 299 309 319 329 339 349 359 369 379 389 399 409 419 429 439 449 459 469 479 489 499
Chain B from PDB Type:PROTEIN Length:471
aligned with TACY_CLOP1 | Q0TUS0 from UniProtKB/Swiss-Prot Length:500
Alignment length:471
39 49 59 69 79 89 99 109 119 129 139 149 159 169 179 189 199 209 219 229 239 249 259 269 279 289 299 309 319 329 339 349 359 369 379 389 399 409 419 429 439 449 459 469 479 489 499
TACY_CLOP1 30 DITDKNQSIDSGISSLSYNRNEVLASNGDKIESFVPKEGKKAGNKFIVVERQKRSLTTSPVDISIIDSVNDRTYPGALQLADKAFVENRPTILMVKRKPININIDLPGLKGENSIKVDDPTYGKVSGAIDELVSKWNEKYSSTHTLPARTQYSESMVYSKSQISSALNVNAKVLENSLGVDFNAVANNEKKVMILAYKQIFYTVSADLPKNPSDLFDDSVTFNDLKQKGVSNEAPPLMVSNVAYGRTIYVKLETTSSSKDVQAAFKALIKNTDIKNSQQYKDIYENSSFTAVVLGGDAQEHNKVVTKDFDEIRKVIKDNATFSTKNPAYPISYTSVFLKDNSVAAVHNKTDYIETTSTEYSKGKINLDHSGAYVAQFEVAWDEVSYDKEGNEVLTHKTWDGNYQDKTAHYSTVIPLEANARNIRIKARECTGLAWEWWRDVISEYDVPLTNNINVSIWGTTLYPGSSITYN 500
SCOP domains d1m3jb_ B: Perfringolysin SCOP domains
CATH domains 1m3jB01 1m3jB02 B:54-89,B:374-390 1m3jB01 B:30-53,B:90-178,B:229-274,B:350-373 HIV-1 Reverse Transcriptase; Chain --------------------------------------------------1m3jB01 B:30-53,B:90-178,B:229-274,B:350-373 ---------------------------------------------------------------------------1m3jB01 1m3jB02 1m3jB04 B:391-500 Perfringolysin, domain 4 CATH domains
Pfam domains (1) ----Thiol_cytolysin-1m3jB01 B:34-499 - Pfam domains (1)
Pfam domains (2) ----Thiol_cytolysin-1m3jB02 B:34-499 - Pfam domains (2)
Sec.struct. author .......hhhhhhhh...hhhhhheeeeee......eeeee...eeeeeeeeeeeeee....ee.............eee.hhhhhh............eeee..........eeee...hhhhhhhhhhhhhhhhhhhh....eee...eeeeee..hhhhhhhhh..hhhhhhhhh..hhhhhh....eeeeeeee...eee......hhhhh.....hhhhhhhhh......eeeeeeeee..eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhheeeeeeee.........eee..hhhhhhhhhh..eee......eeeeeeee.........eeeeeeeeeeeeeee.eeeeeeeeee..eee..eeeeeee.....eeeeeee..............eeee...eeeeeeeeee....hhhhheeeeeeeee....eeeeeeeee...eeeeeee. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------THIOL_CYTOLY-------------------------------- PROSITE (2)
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1m3j B 30 DITDKNQSIDSGISSLSYNRNEVLASNGDKIESFVPKEGKKAGNKFIVVERQKRSLTTSPVDISIIDSVNDRTYPGALQLADKALVENRPTILMVKRKPININIDLPGLKGENSIKVDDPTYGKVSGAIDELVSKWNEKYSSTHTLPARTQYSESMVYSKSQISSALNVNAKVLENSLGVDFNAVANNEKKVMILAYKQIFYTVSADLPKNPSDLFDDSVTFNDLKQKGVSNEAPPLMVSNVAYGRTIYVKLETTSSSKDVQAAFKALIKNTDIKNSQQYKDIYENSSFTAVVLGGDAQEHNKVVTKDFDEIRKVIKDNATFSTKNPAYPISYTSVFLKDNSVAAVHNKTDYIETTSTEYSKGKINLDHSGAYVAQFEVAWDEVSYDKEGNEVLTHKTWDGNYQDKTAHYSTVIPLEANARNIRIKARECTGLAWEWWRDVISEYDVPLTNNINVSIWGTTLYPGSSITYN 500
39 49 59 69 79 89 99 109 119 129 139 149 159 169 179 189 199 209 219 229 239 249 259 269 279 289 299 309 319 329 339 349 359 369 379 389 399 409 419 429 439 449 459 469 479 489 499
Chain B from PDB Type:PROTEIN Length:471
aligned with TACY_CLOPE | P0C2E9 from UniProtKB/Swiss-Prot Length:500
Alignment length:471
39 49 59 69 79 89 99 109 119 129 139 149 159 169 179 189 199 209 219 229 239 249 259 269 279 289 299 309 319 329 339 349 359 369 379 389 399 409 419 429 439 449 459 469 479 489 499
TACY_CLOPE 30 DITDKNQSIDSGISSLSYNRNEVLASNGDKIESFVPKEGKKTGNKFIVVERQKRSLTTSPVDISIIDSVNDRTYPGALQLADKAFVENRPTILMVKRKPININIDLPGLKGENSIKVDDPTYGKVSGAIDELVSKWNEKYSSTHTLPARTQYSESMVYSKSQISSALNVNAKVLENSLGVDFNAVANNEKKVMILAYKQIFYTVSADLPKNPSDLFDDSVTFNDLKQKGVSNEAPPLMVSNVAYGRTIYVKLETTSSSKDVQAAFKALIKNTDIKNSQQYKDIYENSSFTAVVLGGDAQEHNKVVTKDFDEIRKVIKDNATFSTKNPAYPISYTSVFLKDNSVAAVHNKTDYIETTSTEYSKGKINLDHSGAYVAQFEVAWDEVSYDKEGNEVLTHKTWDGNYQDKTAHYSTVIPLEANARNIRIKARECTGLAWEWWRDVISEYDVPLTNNINVSIWGTTLYPGSSITYN 500
SCOP domains d1m3jb_ B: Perfringolysin SCOP domains
CATH domains 1m3jB01 1m3jB02 B:54-89,B:374-390 1m3jB01 B:30-53,B:90-178,B:229-274,B:350-373 HIV-1 Reverse Transcriptase; Chain --------------------------------------------------1m3jB01 B:30-53,B:90-178,B:229-274,B:350-373 ---------------------------------------------------------------------------1m3jB01 1m3jB02 1m3jB04 B:391-500 Perfringolysin, domain 4 CATH domains
Pfam domains (1) ----Thiol_cytolysin-1m3jB01 B:34-499 - Pfam domains (1)
Pfam domains (2) ----Thiol_cytolysin-1m3jB02 B:34-499 - Pfam domains (2)
Sec.struct. author .......hhhhhhhh...hhhhhheeeeee......eeeee...eeeeeeeeeeeeee....ee.............eee.hhhhhh............eeee..........eeee...hhhhhhhhhhhhhhhhhhhh....eee...eeeeee..hhhhhhhhh..hhhhhhhhh..hhhhhh....eeeeeeee...eee......hhhhh.....hhhhhhhhh......eeeeeeeee..eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhheeeeeeee.........eee..hhhhhhhhhh..eee......eeeeeeee.........eeeeeeeeeeeeeee.eeeeeeeeee..eee..eeeeeee.....eeeeeee..............eeee...eeeeeeeeee....hhhhheeeeeeeee....eeeeeeeee...eeeeeee. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------THIOL_CYTOLY-------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1m3j B 30 DITDKNQSIDSGISSLSYNRNEVLASNGDKIESFVPKEGKKAGNKFIVVERQKRSLTTSPVDISIIDSVNDRTYPGALQLADKALVENRPTILMVKRKPININIDLPGLKGENSIKVDDPTYGKVSGAIDELVSKWNEKYSSTHTLPARTQYSESMVYSKSQISSALNVNAKVLENSLGVDFNAVANNEKKVMILAYKQIFYTVSADLPKNPSDLFDDSVTFNDLKQKGVSNEAPPLMVSNVAYGRTIYVKLETTSSSKDVQAAFKALIKNTDIKNSQQYKDIYENSSFTAVVLGGDAQEHNKVVTKDFDEIRKVIKDNATFSTKNPAYPISYTSVFLKDNSVAAVHNKTDYIETTSTEYSKGKINLDHSGAYVAQFEVAWDEVSYDKEGNEVLTHKTWDGNYQDKTAHYSTVIPLEANARNIRIKARECTGLAWEWWRDVISEYDVPLTNNINVSIWGTTLYPGSSITYN 500
39 49 59 69 79 89 99 109 119 129 139 149 159 169 179 189 199 209 219 229 239 249 259 269 279 289 299 309 319 329 339 349 359 369 379 389 399 409 419 429 439 449 459 469 479 489 499
Legend: |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |