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(-) Description

Title :  CRYSTAL STRUCTURE OF A HYDROXYLATED HIF-1 ALPHA PEPTIDE BOUND TO THE PVHL/ELONGIN-C/ELONGIN-B COMPLEX
 
Authors :  W. C. Hon, M. I. Wilson, K. Harlos, T. D. Claridge, C. J. Schofield, C. W. Pugh, P. H. Maxwell, P. J. Ratcliffe, D. I. Stuart, E. Y. Jones
Date :  09 May 02  (Deposition) - 03 Jul 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  A,B,C,D  (2x)
Keywords :  Protein-Peptide Complex, Tumor Suppressor, Cancer, Proteosomal Degradation, Ubiquitin, Prolyl Hydroxylation, Gene Regulation (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  W. C. Hon, M. I. Wilson, K. Harlos, T. D. Claridge, C. J. Schofield, C. W. Pugh, P. H. Maxwell, P. J. Ratcliffe, D. I. Stuart, E. Y. Jones
Structural Basis For The Recognition Of Hydroxyproline In Hif-1 Alpha By Pvhl.
Nature V. 417 975 2002
PubMed-ID: 12050673  |  Reference-DOI: 10.1038/NATURE00767
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ELONGIN B
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VectorPGEX-4T3
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymTRANSCRIPTION ELONGATION FACTOR B, POLYPEPTIDE 2
 
Molecule 2 - ELONGIN C
    ChainsB
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VectorPBB75
    FragmentRESIDUES 17-112
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymTRANSCRIPTION ELONGATION FACTOR B (SIII), POLYPEPTIDE 1
 
Molecule 3 - VON HIPPEL-LINDAU DISEASE TUMOR SUPRESSOR
    ChainsC
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VectorPGEX-4T3
    FragmentRESIDUES 52-213
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymPVHL, G7 PROTEIN
 
Molecule 4 - HYPOXIA-INDUCIBLE FACTOR 1 ALPHA
    ChainsD
    EngineeredYES
    FragmentRESIDUES 549-582
    Other DetailsTHE PEPTIDE WAS SYNTHESIZED WITH A BIOTIN TAG AT THE N-TERMINUS AND WITH P564 AS A 4(R) HYDROXYPROLINE. THE SEQUENCE OF THE PEPTIDE IS NATURALLY FOUND IN HOMO SAPIENS (HUMAN).
    SynonymHIF-1 ALPHA
    SyntheticYES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)ABCD
Biological Unit 2 (2x)ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1HYP1Mod. Amino Acid4-HYDROXYPROLINE
2SO41Ligand/IonSULFATE ION
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1HYP1Mod. Amino Acid4-HYDROXYPROLINE
2SO41Ligand/IonSULFATE ION
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1HYP2Mod. Amino Acid4-HYDROXYPROLINE
2SO42Ligand/IonSULFATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:73 , THR A:74BINDING SITE FOR RESIDUE SO4 A 801

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1LQB)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly B:48 -Pro B:49

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (120, 120)

Asymmetric Unit (120, 120)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
001UniProtVAR_034987L63PVHL_HUMANDisease (PCC)104893827CL63P
002UniProtVAR_034988R64PVHL_HUMANDisease (PCC)104893826CR64P
003UniProtVAR_034989S65AVHL_HUMANDisease (PCC)869025616CS65A
004UniProtVAR_005672S65LVHL_HUMANDisease (VHLD)5030826CS65L
005UniProtVAR_005673S65WVHL_HUMANDisease (VHLD)5030826CS65W
006UniProtVAR_005675S68WVHL_HUMANDisease (VHLD)  ---CS68W
007UniProtVAR_005676E70KVHL_HUMANDisease (VHLD)5030802CE70K
008UniProtVAR_005677V74GVHL_HUMANDisease (VHLD)5030803CV74G
009UniProtVAR_005679F76IVHL_HUMANDisease (VHLD)  ---CF76I
010UniProtVAR_005680F76LVHL_HUMANDisease (VHLD)  ---CF76L
011UniProtVAR_005681F76SVHL_HUMANDisease (VHLD)730882033CF76S
012UniProtVAR_005682N78HVHL_HUMANDisease (VHLD)  ---CN78H
013UniProtVAR_005683N78SVHL_HUMANDisease (VHLD)5030804CN78S
014UniProtVAR_005684N78TVHL_HUMANDisease (VHLD)  ---CN78T
015UniProtVAR_005685R79PVHL_HUMANDisease (VHLD)  ---CR79P
016UniProtVAR_005686S80IVHL_HUMANDisease (VHLD)5030805CS80I
017UniProtVAR_005688S80NVHL_HUMANDisease (VHLD)5030805CS80N
018UniProtVAR_005687S80RVHL_HUMANDisease (VHLD)  ---CS80R
019UniProtVAR_005689P81SVHL_HUMANDisease (VHLD)5030806CP81S
020UniProtVAR_005690R82PVHL_HUMANDisease (VHLD)794726890CR82P
021UniProtVAR_005692V84LVHL_HUMANDisease (VHLD)5030827CV84L
022UniProtVAR_005693P86AVHL_HUMANDisease (VHLD)398123481CP86A
023UniProtVAR_008097P86HVHL_HUMANDisease (VHLD)  ---CP86H
024UniProtVAR_005694P86LVHL_HUMANDisease (VHLD)730882034CP86L
025UniProtVAR_005695P86RVHL_HUMANDisease (VHLD)  ---CP86R
026UniProtVAR_005696P86SVHL_HUMANDisease (VHLD)398123481CP86S
027UniProtVAR_005697W88RVHL_HUMANDisease (VHLD)  ---CW88R
028UniProtVAR_005698W88SVHL_HUMANDisease (VHLD)119103277CW88S
029UniProtVAR_005699L89HVHL_HUMANUnclassified5030807CL89H
030UniProtVAR_005700L89PVHL_HUMANDisease (VHLD)5030807CL89P
031UniProtVAR_005701F91LVHL_HUMANUnclassified  ---CF91L
032UniProtVAR_005703G93CVHL_HUMANDisease (VHLD)5030808CG93C
033UniProtVAR_005704G93DVHL_HUMANDisease (VHLD)  ---CG93D
034UniProtVAR_005705G93SVHL_HUMANDisease (VHLD)5030808CG93S
035UniProtVAR_005706Q96PVHL_HUMANDisease (VHLD)  ---CQ96P
036UniProtVAR_005707Y98HVHL_HUMANDisease (VHLD)5030809CY98H
037UniProtVAR_005708L101GVHL_HUMANDisease (VHLD)  ---CL101G
038UniProtVAR_005709L101RVHL_HUMANDisease (VHLD)  ---CL101R
039UniProtVAR_005710G104AVHL_HUMANUnclassified  ---CG104A
040UniProtVAR_005711T105PVHL_HUMANDisease (VHLD)  ---CT105P
041UniProtVAR_005712G106DVHL_HUMANUnclassified  ---CG106D
042UniProtVAR_034991R107GVHL_HUMANDisease (PCC)397516440CR107G
043UniProtVAR_005713R107PVHL_HUMANDisease (VHLD)193922609CR107P
044UniProtVAR_055087H110YVHL_HUMANPolymorphism17855706CH110Y
045UniProtVAR_005714S111CVHL_HUMANDisease (VHLD)  ---CS111C
046UniProtVAR_005715S111NVHL_HUMANDisease (VHLD)869025631CS111N
047UniProtVAR_005716S111RVHL_HUMANDisease (VHLD)765978945CS111R
048UniProtVAR_005717Y112HVHL_HUMANDisease (VHLD)104893824CY112H
049UniProtVAR_034992Y112NVHL_HUMANDisease (VHLD)104893824CY112N
050UniProtVAR_005718G114CVHL_HUMANDisease (VHLD)  ---CG114C
051UniProtVAR_005719G114RVHL_HUMANDisease (VHLD)869025636CG114R
052UniProtVAR_005720G114SVHL_HUMANDisease (VHLD)  ---CG114S
053UniProtVAR_005723H115QVHL_HUMANDisease (VHLD)  ---CH115Q
054UniProtVAR_008098H115RVHL_HUMANDisease (VHLD)5030812CH115R
055UniProtVAR_005722H115YVHL_HUMANDisease (VHLD)5030811CH115Y
056UniProtVAR_005724L116VVHL_HUMANDisease (VHLD)  ---CL116V
057UniProtVAR_005725W117CVHL_HUMANDisease (VHLD)727504215CW117C
058UniProtVAR_005726L118PVHL_HUMANDisease (VHLD)5030830CL118P
059UniProtVAR_005727L118RVHL_HUMANDisease (VHLD)  ---CL118R
060UniProtVAR_005728F119LVHL_HUMANDisease (VHLD)  ---CF119L
061UniProtVAR_005729F119SVHL_HUMANDisease (VHLD)  ---CF119S
062UniProtVAR_005730D121GVHL_HUMANDisease (VHLD)5030832CD121G
063UniProtVAR_034993A122IVHL_HUMANDisease (PCC)  ---CA122I
064UniProtVAR_034994D126YVHL_HUMANDisease (ECYT2)104893831CD126Y
065UniProtVAR_005731L128FVHL_HUMANDisease (VHLD)  ---CL128F
066UniProtVAR_005733V130LVHL_HUMANDisease (VHLD)104893830CV130L
067UniProtVAR_005734N131KVHL_HUMANDisease (VHLD)  ---CN131K
068UniProtVAR_005735N131TVHL_HUMANDisease (VHLD)  ---CN131T
069UniProtVAR_034995L135FVHL_HUMANPolymorphism119103278CL135F
070UniProtVAR_005737F136CVHL_HUMANDisease (VHLD)5030833CF136C
071UniProtVAR_005736F136SVHL_HUMANDisease (VHLD)5030833CF136S
072UniProtVAR_008099F136YVHL_HUMANDisease (VHLD)  ---CF136Y
073UniProtVAR_005738D143EVHL_HUMANDisease (VHLD)  ---CD143E
074UniProtVAR_008100Q145HVHL_HUMANDisease (VHLD)771727849CQ145H
075UniProtVAR_034996I147TVHL_HUMANDisease (PCC)  ---CI147T
076UniProtVAR_005740A149TVHL_HUMANDisease (VHLD)587780077CA149T
077UniProtVAR_005741P154LVHL_HUMANDisease (VHLD)  ---CP154L
078UniProtVAR_005742V155GVHL_HUMANDisease (VHLD)  ---CV155G
079UniProtVAR_008101V155MVHL_HUMANDisease (VHLD)869025659CV155M
080UniProtVAR_005743Y156CVHL_HUMANDisease (VHLD)397516441CY156C
081UniProtVAR_005744Y156DVHL_HUMANDisease (VHLD)  ---CY156D
082UniProtVAR_034997Y156NVHL_HUMANDisease (PCC)  ---CY156N
083UniProtVAR_005746T157IVHL_HUMANDisease (VHLD)869025660CT157I
084UniProtVAR_005748L158PVHL_HUMANDisease (VHLD)121913346CL158P
085UniProtVAR_005749L158VVHL_HUMANDisease (VHLD)  ---CL158V
086UniProtVAR_005750K159EVHL_HUMANDisease (VHLD)  ---CK159E
087UniProtVAR_005753R161GVHL_HUMANDisease (VHLD)5030818CR161G
088UniProtVAR_005752R161PVHL_HUMANDisease (VHLD)  ---CR161P
089UniProtVAR_005751R161QVHL_HUMANDisease (VHLD)730882035CR161Q
090UniProtVAR_005754C162FVHL_HUMANDisease (VHLD)397516444CC162F
091UniProtVAR_005755C162RVHL_HUMANDisease (VHLD)  ---CC162R
092UniProtVAR_005756C162WVHL_HUMANDisease (VHLD)5030622CC162W
093UniProtVAR_005757C162YVHL_HUMANDisease (VHLD)  ---CC162Y
094UniProtVAR_034998L163PVHL_HUMANDisease (RCC)28940297CL163P
095UniProtVAR_008102Q164HVHL_HUMANDisease (VHLD)  ---CQ164H
096UniProtVAR_005758Q164RVHL_HUMANDisease (VHLD)267607170CQ164R
097UniProtVAR_008103V166DVHL_HUMANDisease (VHLD)  ---CV166D
098UniProtVAR_005759V166FVHL_HUMANDisease (VHLD)104893825CV166F
099UniProtVAR_005760R167GVHL_HUMANDisease (VHLD)5030820CR167G
100UniProtVAR_005761R167QVHL_HUMANDisease (VHLD)5030821CR167Q
101UniProtVAR_005762R167WVHL_HUMANDisease (VHLD)5030820CR167W
102UniProtVAR_005763V170DVHL_HUMANDisease (VHLD)  ---CV170D
103UniProtVAR_005764V170FVHL_HUMANDisease (VHLD)  ---CV170F
104UniProtVAR_005765V170GVHL_HUMANDisease (VHLD)  ---CV170G
105UniProtVAR_005766Y175DVHL_HUMANDisease (VHLD)  ---CY175D
106UniProtVAR_008104R176WVHL_HUMANDisease (VHLD)  ---CR176W
107UniProtVAR_005768L178PVHL_HUMANDisease (VHLD)  ---CL178P
108UniProtVAR_005769L178QVHL_HUMANDisease (VHLD)5030822CL178Q
109UniProtVAR_005770I180VVHL_HUMANDisease (VHLD)377715747CI180V
110UniProtVAR_005772L184PVHL_HUMANDisease (VHLD)  ---CL184P
111UniProtVAR_005771L184RVHL_HUMANDisease (VHLD)  ---CL184R
112UniProtVAR_005773E186KVHL_HUMANDisease (VHLD)367545984CE186K
113UniProtVAR_005775L188PVHL_HUMANDisease (VHLD)  ---CL188P
114UniProtVAR_005776L188QVHL_HUMANDisease (VHLD)  ---CL188Q
115UniProtVAR_005777L188VVHL_HUMANDisease (VHLD)5030824CL188V
116UniProtVAR_034999H191DVHL_HUMANDisease (ECYT2)28940301CH191D
117UniProtVAR_035000P192SVHL_HUMANDisease (ECYT2)28940300CP192S
118UniProtVAR_035001L198QVHL_HUMANDisease (PCC)  ---CL198Q
119UniProtVAR_005778L198RVHL_HUMANDisease (VHLD)  ---CL198R
120UniProtVAR_005779R200WVHL_HUMANDisease (VHLD)28940298CR200W

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (120, 120)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
001UniProtVAR_034987L63PVHL_HUMANDisease (PCC)104893827CL63P
002UniProtVAR_034988R64PVHL_HUMANDisease (PCC)104893826CR64P
003UniProtVAR_034989S65AVHL_HUMANDisease (PCC)869025616CS65A
004UniProtVAR_005672S65LVHL_HUMANDisease (VHLD)5030826CS65L
005UniProtVAR_005673S65WVHL_HUMANDisease (VHLD)5030826CS65W
006UniProtVAR_005675S68WVHL_HUMANDisease (VHLD)  ---CS68W
007UniProtVAR_005676E70KVHL_HUMANDisease (VHLD)5030802CE70K
008UniProtVAR_005677V74GVHL_HUMANDisease (VHLD)5030803CV74G
009UniProtVAR_005679F76IVHL_HUMANDisease (VHLD)  ---CF76I
010UniProtVAR_005680F76LVHL_HUMANDisease (VHLD)  ---CF76L
011UniProtVAR_005681F76SVHL_HUMANDisease (VHLD)730882033CF76S
012UniProtVAR_005682N78HVHL_HUMANDisease (VHLD)  ---CN78H
013UniProtVAR_005683N78SVHL_HUMANDisease (VHLD)5030804CN78S
014UniProtVAR_005684N78TVHL_HUMANDisease (VHLD)  ---CN78T
015UniProtVAR_005685R79PVHL_HUMANDisease (VHLD)  ---CR79P
016UniProtVAR_005686S80IVHL_HUMANDisease (VHLD)5030805CS80I
017UniProtVAR_005688S80NVHL_HUMANDisease (VHLD)5030805CS80N
018UniProtVAR_005687S80RVHL_HUMANDisease (VHLD)  ---CS80R
019UniProtVAR_005689P81SVHL_HUMANDisease (VHLD)5030806CP81S
020UniProtVAR_005690R82PVHL_HUMANDisease (VHLD)794726890CR82P
021UniProtVAR_005692V84LVHL_HUMANDisease (VHLD)5030827CV84L
022UniProtVAR_005693P86AVHL_HUMANDisease (VHLD)398123481CP86A
023UniProtVAR_008097P86HVHL_HUMANDisease (VHLD)  ---CP86H
024UniProtVAR_005694P86LVHL_HUMANDisease (VHLD)730882034CP86L
025UniProtVAR_005695P86RVHL_HUMANDisease (VHLD)  ---CP86R
026UniProtVAR_005696P86SVHL_HUMANDisease (VHLD)398123481CP86S
027UniProtVAR_005697W88RVHL_HUMANDisease (VHLD)  ---CW88R
028UniProtVAR_005698W88SVHL_HUMANDisease (VHLD)119103277CW88S
029UniProtVAR_005699L89HVHL_HUMANUnclassified5030807CL89H
030UniProtVAR_005700L89PVHL_HUMANDisease (VHLD)5030807CL89P
031UniProtVAR_005701F91LVHL_HUMANUnclassified  ---CF91L
032UniProtVAR_005703G93CVHL_HUMANDisease (VHLD)5030808CG93C
033UniProtVAR_005704G93DVHL_HUMANDisease (VHLD)  ---CG93D
034UniProtVAR_005705G93SVHL_HUMANDisease (VHLD)5030808CG93S
035UniProtVAR_005706Q96PVHL_HUMANDisease (VHLD)  ---CQ96P
036UniProtVAR_005707Y98HVHL_HUMANDisease (VHLD)5030809CY98H
037UniProtVAR_005708L101GVHL_HUMANDisease (VHLD)  ---CL101G
038UniProtVAR_005709L101RVHL_HUMANDisease (VHLD)  ---CL101R
039UniProtVAR_005710G104AVHL_HUMANUnclassified  ---CG104A
040UniProtVAR_005711T105PVHL_HUMANDisease (VHLD)  ---CT105P
041UniProtVAR_005712G106DVHL_HUMANUnclassified  ---CG106D
042UniProtVAR_034991R107GVHL_HUMANDisease (PCC)397516440CR107G
043UniProtVAR_005713R107PVHL_HUMANDisease (VHLD)193922609CR107P
044UniProtVAR_055087H110YVHL_HUMANPolymorphism17855706CH110Y
045UniProtVAR_005714S111CVHL_HUMANDisease (VHLD)  ---CS111C
046UniProtVAR_005715S111NVHL_HUMANDisease (VHLD)869025631CS111N
047UniProtVAR_005716S111RVHL_HUMANDisease (VHLD)765978945CS111R
048UniProtVAR_005717Y112HVHL_HUMANDisease (VHLD)104893824CY112H
049UniProtVAR_034992Y112NVHL_HUMANDisease (VHLD)104893824CY112N
050UniProtVAR_005718G114CVHL_HUMANDisease (VHLD)  ---CG114C
051UniProtVAR_005719G114RVHL_HUMANDisease (VHLD)869025636CG114R
052UniProtVAR_005720G114SVHL_HUMANDisease (VHLD)  ---CG114S
053UniProtVAR_005723H115QVHL_HUMANDisease (VHLD)  ---CH115Q
054UniProtVAR_008098H115RVHL_HUMANDisease (VHLD)5030812CH115R
055UniProtVAR_005722H115YVHL_HUMANDisease (VHLD)5030811CH115Y
056UniProtVAR_005724L116VVHL_HUMANDisease (VHLD)  ---CL116V
057UniProtVAR_005725W117CVHL_HUMANDisease (VHLD)727504215CW117C
058UniProtVAR_005726L118PVHL_HUMANDisease (VHLD)5030830CL118P
059UniProtVAR_005727L118RVHL_HUMANDisease (VHLD)  ---CL118R
060UniProtVAR_005728F119LVHL_HUMANDisease (VHLD)  ---CF119L
061UniProtVAR_005729F119SVHL_HUMANDisease (VHLD)  ---CF119S
062UniProtVAR_005730D121GVHL_HUMANDisease (VHLD)5030832CD121G
063UniProtVAR_034993A122IVHL_HUMANDisease (PCC)  ---CA122I
064UniProtVAR_034994D126YVHL_HUMANDisease (ECYT2)104893831CD126Y
065UniProtVAR_005731L128FVHL_HUMANDisease (VHLD)  ---CL128F
066UniProtVAR_005733V130LVHL_HUMANDisease (VHLD)104893830CV130L
067UniProtVAR_005734N131KVHL_HUMANDisease (VHLD)  ---CN131K
068UniProtVAR_005735N131TVHL_HUMANDisease (VHLD)  ---CN131T
069UniProtVAR_034995L135FVHL_HUMANPolymorphism119103278CL135F
070UniProtVAR_005737F136CVHL_HUMANDisease (VHLD)5030833CF136C
071UniProtVAR_005736F136SVHL_HUMANDisease (VHLD)5030833CF136S
072UniProtVAR_008099F136YVHL_HUMANDisease (VHLD)  ---CF136Y
073UniProtVAR_005738D143EVHL_HUMANDisease (VHLD)  ---CD143E
074UniProtVAR_008100Q145HVHL_HUMANDisease (VHLD)771727849CQ145H
075UniProtVAR_034996I147TVHL_HUMANDisease (PCC)  ---CI147T
076UniProtVAR_005740A149TVHL_HUMANDisease (VHLD)587780077CA149T
077UniProtVAR_005741P154LVHL_HUMANDisease (VHLD)  ---CP154L
078UniProtVAR_005742V155GVHL_HUMANDisease (VHLD)  ---CV155G
079UniProtVAR_008101V155MVHL_HUMANDisease (VHLD)869025659CV155M
080UniProtVAR_005743Y156CVHL_HUMANDisease (VHLD)397516441CY156C
081UniProtVAR_005744Y156DVHL_HUMANDisease (VHLD)  ---CY156D
082UniProtVAR_034997Y156NVHL_HUMANDisease (PCC)  ---CY156N
083UniProtVAR_005746T157IVHL_HUMANDisease (VHLD)869025660CT157I
084UniProtVAR_005748L158PVHL_HUMANDisease (VHLD)121913346CL158P
085UniProtVAR_005749L158VVHL_HUMANDisease (VHLD)  ---CL158V
086UniProtVAR_005750K159EVHL_HUMANDisease (VHLD)  ---CK159E
087UniProtVAR_005753R161GVHL_HUMANDisease (VHLD)5030818CR161G
088UniProtVAR_005752R161PVHL_HUMANDisease (VHLD)  ---CR161P
089UniProtVAR_005751R161QVHL_HUMANDisease (VHLD)730882035CR161Q
090UniProtVAR_005754C162FVHL_HUMANDisease (VHLD)397516444CC162F
091UniProtVAR_005755C162RVHL_HUMANDisease (VHLD)  ---CC162R
092UniProtVAR_005756C162WVHL_HUMANDisease (VHLD)5030622CC162W
093UniProtVAR_005757C162YVHL_HUMANDisease (VHLD)  ---CC162Y
094UniProtVAR_034998L163PVHL_HUMANDisease (RCC)28940297CL163P
095UniProtVAR_008102Q164HVHL_HUMANDisease (VHLD)  ---CQ164H
096UniProtVAR_005758Q164RVHL_HUMANDisease (VHLD)267607170CQ164R
097UniProtVAR_008103V166DVHL_HUMANDisease (VHLD)  ---CV166D
098UniProtVAR_005759V166FVHL_HUMANDisease (VHLD)104893825CV166F
099UniProtVAR_005760R167GVHL_HUMANDisease (VHLD)5030820CR167G
100UniProtVAR_005761R167QVHL_HUMANDisease (VHLD)5030821CR167Q
101UniProtVAR_005762R167WVHL_HUMANDisease (VHLD)5030820CR167W
102UniProtVAR_005763V170DVHL_HUMANDisease (VHLD)  ---CV170D
103UniProtVAR_005764V170FVHL_HUMANDisease (VHLD)  ---CV170F
104UniProtVAR_005765V170GVHL_HUMANDisease (VHLD)  ---CV170G
105UniProtVAR_005766Y175DVHL_HUMANDisease (VHLD)  ---CY175D
106UniProtVAR_008104R176WVHL_HUMANDisease (VHLD)  ---CR176W
107UniProtVAR_005768L178PVHL_HUMANDisease (VHLD)  ---CL178P
108UniProtVAR_005769L178QVHL_HUMANDisease (VHLD)5030822CL178Q
109UniProtVAR_005770I180VVHL_HUMANDisease (VHLD)377715747CI180V
110UniProtVAR_005772L184PVHL_HUMANDisease (VHLD)  ---CL184P
111UniProtVAR_005771L184RVHL_HUMANDisease (VHLD)  ---CL184R
112UniProtVAR_005773E186KVHL_HUMANDisease (VHLD)367545984CE186K
113UniProtVAR_005775L188PVHL_HUMANDisease (VHLD)  ---CL188P
114UniProtVAR_005776L188QVHL_HUMANDisease (VHLD)  ---CL188Q
115UniProtVAR_005777L188VVHL_HUMANDisease (VHLD)5030824CL188V
116UniProtVAR_034999H191DVHL_HUMANDisease (ECYT2)28940301CH191D
117UniProtVAR_035000P192SVHL_HUMANDisease (ECYT2)28940300CP192S
118UniProtVAR_035001L198QVHL_HUMANDisease (PCC)  ---CL198Q
119UniProtVAR_005778L198RVHL_HUMANDisease (VHLD)  ---CL198R
120UniProtVAR_005779R200WVHL_HUMANDisease (VHLD)28940298CR200W

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (120, 240)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
001UniProtVAR_034987L63PVHL_HUMANDisease (PCC)104893827CL63P
002UniProtVAR_034988R64PVHL_HUMANDisease (PCC)104893826CR64P
003UniProtVAR_034989S65AVHL_HUMANDisease (PCC)869025616CS65A
004UniProtVAR_005672S65LVHL_HUMANDisease (VHLD)5030826CS65L
005UniProtVAR_005673S65WVHL_HUMANDisease (VHLD)5030826CS65W
006UniProtVAR_005675S68WVHL_HUMANDisease (VHLD)  ---CS68W
007UniProtVAR_005676E70KVHL_HUMANDisease (VHLD)5030802CE70K
008UniProtVAR_005677V74GVHL_HUMANDisease (VHLD)5030803CV74G
009UniProtVAR_005679F76IVHL_HUMANDisease (VHLD)  ---CF76I
010UniProtVAR_005680F76LVHL_HUMANDisease (VHLD)  ---CF76L
011UniProtVAR_005681F76SVHL_HUMANDisease (VHLD)730882033CF76S
012UniProtVAR_005682N78HVHL_HUMANDisease (VHLD)  ---CN78H
013UniProtVAR_005683N78SVHL_HUMANDisease (VHLD)5030804CN78S
014UniProtVAR_005684N78TVHL_HUMANDisease (VHLD)  ---CN78T
015UniProtVAR_005685R79PVHL_HUMANDisease (VHLD)  ---CR79P
016UniProtVAR_005686S80IVHL_HUMANDisease (VHLD)5030805CS80I
017UniProtVAR_005688S80NVHL_HUMANDisease (VHLD)5030805CS80N
018UniProtVAR_005687S80RVHL_HUMANDisease (VHLD)  ---CS80R
019UniProtVAR_005689P81SVHL_HUMANDisease (VHLD)5030806CP81S
020UniProtVAR_005690R82PVHL_HUMANDisease (VHLD)794726890CR82P
021UniProtVAR_005692V84LVHL_HUMANDisease (VHLD)5030827CV84L
022UniProtVAR_005693P86AVHL_HUMANDisease (VHLD)398123481CP86A
023UniProtVAR_008097P86HVHL_HUMANDisease (VHLD)  ---CP86H
024UniProtVAR_005694P86LVHL_HUMANDisease (VHLD)730882034CP86L
025UniProtVAR_005695P86RVHL_HUMANDisease (VHLD)  ---CP86R
026UniProtVAR_005696P86SVHL_HUMANDisease (VHLD)398123481CP86S
027UniProtVAR_005697W88RVHL_HUMANDisease (VHLD)  ---CW88R
028UniProtVAR_005698W88SVHL_HUMANDisease (VHLD)119103277CW88S
029UniProtVAR_005699L89HVHL_HUMANUnclassified5030807CL89H
030UniProtVAR_005700L89PVHL_HUMANDisease (VHLD)5030807CL89P
031UniProtVAR_005701F91LVHL_HUMANUnclassified  ---CF91L
032UniProtVAR_005703G93CVHL_HUMANDisease (VHLD)5030808CG93C
033UniProtVAR_005704G93DVHL_HUMANDisease (VHLD)  ---CG93D
034UniProtVAR_005705G93SVHL_HUMANDisease (VHLD)5030808CG93S
035UniProtVAR_005706Q96PVHL_HUMANDisease (VHLD)  ---CQ96P
036UniProtVAR_005707Y98HVHL_HUMANDisease (VHLD)5030809CY98H
037UniProtVAR_005708L101GVHL_HUMANDisease (VHLD)  ---CL101G
038UniProtVAR_005709L101RVHL_HUMANDisease (VHLD)  ---CL101R
039UniProtVAR_005710G104AVHL_HUMANUnclassified  ---CG104A
040UniProtVAR_005711T105PVHL_HUMANDisease (VHLD)  ---CT105P
041UniProtVAR_005712G106DVHL_HUMANUnclassified  ---CG106D
042UniProtVAR_034991R107GVHL_HUMANDisease (PCC)397516440CR107G
043UniProtVAR_005713R107PVHL_HUMANDisease (VHLD)193922609CR107P
044UniProtVAR_055087H110YVHL_HUMANPolymorphism17855706CH110Y
045UniProtVAR_005714S111CVHL_HUMANDisease (VHLD)  ---CS111C
046UniProtVAR_005715S111NVHL_HUMANDisease (VHLD)869025631CS111N
047UniProtVAR_005716S111RVHL_HUMANDisease (VHLD)765978945CS111R
048UniProtVAR_005717Y112HVHL_HUMANDisease (VHLD)104893824CY112H
049UniProtVAR_034992Y112NVHL_HUMANDisease (VHLD)104893824CY112N
050UniProtVAR_005718G114CVHL_HUMANDisease (VHLD)  ---CG114C
051UniProtVAR_005719G114RVHL_HUMANDisease (VHLD)869025636CG114R
052UniProtVAR_005720G114SVHL_HUMANDisease (VHLD)  ---CG114S
053UniProtVAR_005723H115QVHL_HUMANDisease (VHLD)  ---CH115Q
054UniProtVAR_008098H115RVHL_HUMANDisease (VHLD)5030812CH115R
055UniProtVAR_005722H115YVHL_HUMANDisease (VHLD)5030811CH115Y
056UniProtVAR_005724L116VVHL_HUMANDisease (VHLD)  ---CL116V
057UniProtVAR_005725W117CVHL_HUMANDisease (VHLD)727504215CW117C
058UniProtVAR_005726L118PVHL_HUMANDisease (VHLD)5030830CL118P
059UniProtVAR_005727L118RVHL_HUMANDisease (VHLD)  ---CL118R
060UniProtVAR_005728F119LVHL_HUMANDisease (VHLD)  ---CF119L
061UniProtVAR_005729F119SVHL_HUMANDisease (VHLD)  ---CF119S
062UniProtVAR_005730D121GVHL_HUMANDisease (VHLD)5030832CD121G
063UniProtVAR_034993A122IVHL_HUMANDisease (PCC)  ---CA122I
064UniProtVAR_034994D126YVHL_HUMANDisease (ECYT2)104893831CD126Y
065UniProtVAR_005731L128FVHL_HUMANDisease (VHLD)  ---CL128F
066UniProtVAR_005733V130LVHL_HUMANDisease (VHLD)104893830CV130L
067UniProtVAR_005734N131KVHL_HUMANDisease (VHLD)  ---CN131K
068UniProtVAR_005735N131TVHL_HUMANDisease (VHLD)  ---CN131T
069UniProtVAR_034995L135FVHL_HUMANPolymorphism119103278CL135F
070UniProtVAR_005737F136CVHL_HUMANDisease (VHLD)5030833CF136C
071UniProtVAR_005736F136SVHL_HUMANDisease (VHLD)5030833CF136S
072UniProtVAR_008099F136YVHL_HUMANDisease (VHLD)  ---CF136Y
073UniProtVAR_005738D143EVHL_HUMANDisease (VHLD)  ---CD143E
074UniProtVAR_008100Q145HVHL_HUMANDisease (VHLD)771727849CQ145H
075UniProtVAR_034996I147TVHL_HUMANDisease (PCC)  ---CI147T
076UniProtVAR_005740A149TVHL_HUMANDisease (VHLD)587780077CA149T
077UniProtVAR_005741P154LVHL_HUMANDisease (VHLD)  ---CP154L
078UniProtVAR_005742V155GVHL_HUMANDisease (VHLD)  ---CV155G
079UniProtVAR_008101V155MVHL_HUMANDisease (VHLD)869025659CV155M
080UniProtVAR_005743Y156CVHL_HUMANDisease (VHLD)397516441CY156C
081UniProtVAR_005744Y156DVHL_HUMANDisease (VHLD)  ---CY156D
082UniProtVAR_034997Y156NVHL_HUMANDisease (PCC)  ---CY156N
083UniProtVAR_005746T157IVHL_HUMANDisease (VHLD)869025660CT157I
084UniProtVAR_005748L158PVHL_HUMANDisease (VHLD)121913346CL158P
085UniProtVAR_005749L158VVHL_HUMANDisease (VHLD)  ---CL158V
086UniProtVAR_005750K159EVHL_HUMANDisease (VHLD)  ---CK159E
087UniProtVAR_005753R161GVHL_HUMANDisease (VHLD)5030818CR161G
088UniProtVAR_005752R161PVHL_HUMANDisease (VHLD)  ---CR161P
089UniProtVAR_005751R161QVHL_HUMANDisease (VHLD)730882035CR161Q
090UniProtVAR_005754C162FVHL_HUMANDisease (VHLD)397516444CC162F
091UniProtVAR_005755C162RVHL_HUMANDisease (VHLD)  ---CC162R
092UniProtVAR_005756C162WVHL_HUMANDisease (VHLD)5030622CC162W
093UniProtVAR_005757C162YVHL_HUMANDisease (VHLD)  ---CC162Y
094UniProtVAR_034998L163PVHL_HUMANDisease (RCC)28940297CL163P
095UniProtVAR_008102Q164HVHL_HUMANDisease (VHLD)  ---CQ164H
096UniProtVAR_005758Q164RVHL_HUMANDisease (VHLD)267607170CQ164R
097UniProtVAR_008103V166DVHL_HUMANDisease (VHLD)  ---CV166D
098UniProtVAR_005759V166FVHL_HUMANDisease (VHLD)104893825CV166F
099UniProtVAR_005760R167GVHL_HUMANDisease (VHLD)5030820CR167G
100UniProtVAR_005761R167QVHL_HUMANDisease (VHLD)5030821CR167Q
101UniProtVAR_005762R167WVHL_HUMANDisease (VHLD)5030820CR167W
102UniProtVAR_005763V170DVHL_HUMANDisease (VHLD)  ---CV170D
103UniProtVAR_005764V170FVHL_HUMANDisease (VHLD)  ---CV170F
104UniProtVAR_005765V170GVHL_HUMANDisease (VHLD)  ---CV170G
105UniProtVAR_005766Y175DVHL_HUMANDisease (VHLD)  ---CY175D
106UniProtVAR_008104R176WVHL_HUMANDisease (VHLD)  ---CR176W
107UniProtVAR_005768L178PVHL_HUMANDisease (VHLD)  ---CL178P
108UniProtVAR_005769L178QVHL_HUMANDisease (VHLD)5030822CL178Q
109UniProtVAR_005770I180VVHL_HUMANDisease (VHLD)377715747CI180V
110UniProtVAR_005772L184PVHL_HUMANDisease (VHLD)  ---CL184P
111UniProtVAR_005771L184RVHL_HUMANDisease (VHLD)  ---CL184R
112UniProtVAR_005773E186KVHL_HUMANDisease (VHLD)367545984CE186K
113UniProtVAR_005775L188PVHL_HUMANDisease (VHLD)  ---CL188P
114UniProtVAR_005776L188QVHL_HUMANDisease (VHLD)  ---CL188Q
115UniProtVAR_005777L188VVHL_HUMANDisease (VHLD)5030824CL188V
116UniProtVAR_034999H191DVHL_HUMANDisease (ECYT2)28940301CH191D
117UniProtVAR_035000P192SVHL_HUMANDisease (ECYT2)28940300CP192S
118UniProtVAR_035001L198QVHL_HUMANDisease (PCC)  ---CL198Q
119UniProtVAR_005778L198RVHL_HUMANDisease (VHLD)  ---CL198R
120UniProtVAR_005779R200WVHL_HUMANDisease (VHLD)28940298CR200W

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 1)

Asymmetric Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1UBIQUITIN_2PS50053 Ubiquitin domain profile.ELOB_HUMAN1-66  1A:1-66
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1UBIQUITIN_2PS50053 Ubiquitin domain profile.ELOB_HUMAN1-66  1A:1-66
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1UBIQUITIN_2PS50053 Ubiquitin domain profile.ELOB_HUMAN1-66  2A:1-66

(-) Exons   (6, 6)

Asymmetric Unit (6, 6)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000002564741aENSE00001930974chr3:10182692-101838711180VHL_HUMAN1-1141141C:61-11454
1.4ENST000002564744ENSE00001163994chr3:10188198-10188320123VHL_HUMAN114-155421C:114-15542
1.6dENST000002564746dENSE00001814424chr3:10191471-101939042434VHL_HUMAN155-213591C:155-21056

2.1gENST000002848111gENSE00002103151chr8:74884341-7488427765ELOC_HUMAN-00--
2.6ENST000002848116ENSE00001087342chr8:74872053-7487200054ELOC_HUMAN1-220--
2.7ENST000002848117ENSE00001016720chr8:74868289-74868146144ELOC_HUMAN2-50491B:17-4933
2.10dENST0000028481110dENSE00001424822chr8:74859055-74858636420ELOC_HUMAN50-112631B:58-11255

3.1aENST000003371381aENSE00001520256chr14:62162258-62162557300HIF1A_HUMAN1-12120--
3.2bENST000003371382bENSE00000867524chr14:62187100-62187290191HIF1A_HUMAN12-76650--
3.3ENST000003371383ENSE00000658281chr14:62188227-62188372146HIF1A_HUMAN76-124490--
3.4ENST000003371384ENSE00000658282chr14:62188457-6218854185HIF1A_HUMAN125-153290--
3.5ENST000003371385ENSE00000658283chr14:62193424-62193536113HIF1A_HUMAN153-190380--
3.6ENST000003371386ENSE00000658284chr14:62194171-62194373203HIF1A_HUMAN191-258680--
3.7ENST000003371387ENSE00000658285chr14:62199136-62199242107HIF1A_HUMAN258-294370--
3.8ENST000003371388ENSE00000658286chr14:62200856-62201003148HIF1A_HUMAN294-343500--
3.9ENST000003371389ENSE00000658287chr14:62203607-62203827221HIF1A_HUMAN343-417750--
3.10ENST0000033713810ENSE00000658289chr14:62204805-62205091287HIF1A_HUMAN417-512960--
3.11ENST0000033713811ENSE00000658291chr14:62207223-62207345123HIF1A_HUMAN513-553410--
3.12ENST0000033713812ENSE00000658293chr14:62207473-62207906434HIF1A_HUMAN554-6981451D:560-57718
3.13ENST0000033713813ENSE00000658295chr14:62211423-62211531109HIF1A_HUMAN698-734370--
3.14ENST0000033713814ENSE00000658297chr14:62212409-62212535127HIF1A_HUMAN735-777430--
3.15ENST0000033713815ENSE00001660793chr14:62213652-622149761325HIF1A_HUMAN777-826500--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:104
 aligned with ELOB_HUMAN | Q15370 from UniProtKB/Swiss-Prot  Length:118

    Alignment length:104
                                    10        20        30        40        50        60        70        80        90       100    
           ELOB_HUMAN     1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADDTFEALCIEPFSSPPELPDVMK 104
               SCOP domains d1lqba_ A: Elongin B                                                                                     SCOP domains
               CATH domains 1lqbA00 A:1-104 Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..eeeeeeee...hhhhhhhhhhhhhh.hhh.eeeee..ee......................eeeeeee....................hhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE UBIQUITIN_2  PDB: A:1-66 UniProt: 1-66                            -------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 1lqb A   1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADDTFEALCIEPFSSPPELPDVMK 104
                                    10        20        30        40        50        60        70        80        90       100    

Chain B from PDB  Type:PROTEIN  Length:88
 aligned with ELOC_HUMAN | Q15369 from UniProtKB/Swiss-Prot  Length:112

    Alignment length:96
                                    26        36        46        56        66        76        86        96       106      
           ELOC_HUMAN    17 MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112
               SCOP domains d1lqbb_ B: Elongin C                                                                             SCOP domains
               CATH domains 1lqbB00 B:17-112 Potassium Channe        l Kv1.1; Chain A                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee.....eeeeehhhhh.hhhhhhhh...--------.eee....hhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
           Transcript 2 (1) ---------------------------------Exon 2.10d  PDB: B:58-112 UniProt: 50-112 [INCOMPLETE]          Transcript 2 (1)
           Transcript 2 (2) Exon 2.7  PDB: B:17-49            -------------------------------------------------------------- Transcript 2 (2)
                 1lqb B  17 MYVKLISSDGHEFIVKREHALTSGTIKAMLSGP--------NEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112
                                    26        36        46  |      - |      66        76        86        96       106      
                                                           49       58                                                      

Chain C from PDB  Type:PROTEIN  Length:150
 aligned with VHL_HUMAN | P40337 from UniProtKB/Swiss-Prot  Length:213

    Alignment length:150
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210
            VHL_HUMAN    61 PVLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYRGHLWLFRDAGTHDGLLVNQTELFVPSLNVDGQPIFANITLPVYTLKERCLQVVRSLVKPENYRRLDIVRSLYEDLEDHPNVQKDLERLTQERIAHQR 210
               SCOP domains d1lqbc_ C: VHL                                                                                                                                         SCOP domains
               CATH domains --1lqbC02 C:63-152  [code=2.60.40.780, no name defined]                                     1lqbC01 C:153-204 Elongin C, Chain C domain 1       ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........eeeeeeee.....eeeeee.....eee.......eeeeeeee...eeeeee.......ee................eeeeee....hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhhhhhh.. Sec.struct. author
             SAPs(SNPs) (1) --PPA--W-K---G-I-HPISP-L-A-RH-L-C--P-H--G--APDG--YCH-CQVCPL-GI---Y-F-LK---FC------E-H-T-T----LGCIPE-GFPH-DG--D----DW-P-V---P-K-P--DS-----Q-W---------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----L----------L-S-N-----H-SP---D-------R-----P---NN-RR--RS-----------T----S------------------MD-V--PR-R-FQ--F-------Q-----R---Q---------R------------ SAPs(SNPs) (2)
             SAPs(SNPs) (3) ----W----------S-T-R-----L------S-----------------R--SY--------------------Y-------------------N----QW----W--G-----------------V---------------------- SAPs(SNPs) (3)
             SAPs(SNPs) (4) -------------------------R---------------------------------------------------------------------------Y------------------------------------------------ SAPs(SNPs) (4)
             SAPs(SNPs) (5) -------------------------S---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (5)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.1a  PDB: C:61-114 UniProt: 1-114 [INCOMPLETE]  ----------------------------------------Exon 1.6d  PDB: C:155-210 UniProt: 155-213 [INCOMPLETE]  Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------Exon 1.4  PDB: C:114-155 UniProt: 114-155 ------------------------------------------------------- Transcript 1 (2)
                 1lqb C  61 PVLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYRGHLWLFRDAGTHDGLLVNQTELFVPSLNVDGQPIFANITLPVYTLKERCLQVVRSLVKPENYRRLDIVRSLYEDLEDHPNVQKDLERLTQERIAHQR 210
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210

Chain D from PDB  Type:PROTEIN  Length:18
 aligned with HIF1A_HUMAN | Q16665 from UniProtKB/Swiss-Prot  Length:826

    Alignment length:18
                                   569        
          HIF1A_HUMAN   560 EMLAPYIPMDDDFQLRSF 577
               SCOP domains ------------------ SCOP domains
               CATH domains ------------------ CATH domains
               Pfam domains ------------------ Pfam domains
         Sec.struct. author ............ee.... Sec.struct. author
                 SAPs(SNPs) ------------------ SAPs(SNPs)
                    PROSITE ------------------ PROSITE
               Transcript 3 Exon 3.12          Transcript 3
                 1lqb D 560 EMLApYIPMDDDFQLRSF 577
                                |  569        
                              564-HYP         

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 3)

Asymmetric Unit

(-) CATH Domains  (4, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1LQB)

(-) Gene Ontology  (180, 214)

Asymmetric Unit(hide GO term definitions)
Chain A   (ELOB_HUMAN | Q15370)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0031625    ubiquitin protein ligase binding    Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
biological process
    GO:0006461    protein complex assembly    The aggregation, arrangement and bonding together of a set of components to form a protein complex.
    GO:0016567    protein ubiquitination    The process in which one or more ubiquitin groups are added to a protein.
    GO:0061418    regulation of transcription from RNA polymerase II promoter in response to hypoxia    Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a hypoxia stimulus.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006368    transcription elongation from RNA polymerase II promoter    The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase II promoter by the addition of ribonucleotides catalyzed by RNA polymerase II.
    GO:0006366    transcription from RNA polymerase II promoter    The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0031462    Cul2-RING ubiquitin ligase complex    A ubiquitin ligase complex in which a cullin from the Cul2 subfamily and a RING domain protein form the catalytic core; substrate specificity is conferred by an elongin-BC adaptor and a SOCS/BC box protein.
    GO:0031466    Cul5-RING ubiquitin ligase complex    A ubiquitin ligase complex in which a cullin from the Cul5 subfamily and a RING domain protein form the catalytic core; substrate specificity is conferred by an elongin-BC adaptor and a SOCS/BC box protein.
    GO:0030891    VCB complex    A protein complex that possesses ubiquitin ligase activity; the complex is usually pentameric; for example, in mammals the subunits are pVHL, elongin B, elongin C, cullin-2 (Cul2), and Rbx1.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070449    elongin complex    A transcription elongation factor complex that suppresses RNA polymerase II pausing, and may act by promoting proper alignment of the 3'-end of nascent transcripts with the polymerase catalytic site. Consists of a transcriptionally active Elongin A subunit (abut 100 kDa)and two smaller Elongin B (about 18 kDa) and Elongin C (about 15 kDa)subunits.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain B   (ELOC_HUMAN | Q15369)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004842    ubiquitin-protein transferase activity    Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
biological process
    GO:0032968    positive regulation of transcription elongation from RNA polymerase II promoter    Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II.
    GO:0042787    protein ubiquitination involved in ubiquitin-dependent protein catabolic process    The process in which a ubiquitin group, or multiple groups, are covalently attached to the target protein, thereby initiating the degradation of that protein.
    GO:0006357    regulation of transcription from RNA polymerase II promoter    Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0061418    regulation of transcription from RNA polymerase II promoter in response to hypoxia    Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a hypoxia stimulus.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006368    transcription elongation from RNA polymerase II promoter    The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase II promoter by the addition of ribonucleotides catalyzed by RNA polymerase II.
    GO:0006366    transcription from RNA polymerase II promoter    The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0006511    ubiquitin-dependent protein catabolic process    The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070449    elongin complex    A transcription elongation factor complex that suppresses RNA polymerase II pausing, and may act by promoting proper alignment of the 3'-end of nascent transcripts with the polymerase catalytic site. Consists of a transcriptionally active Elongin A subunit (abut 100 kDa)and two smaller Elongin B (about 18 kDa) and Elongin C (about 15 kDa)subunits.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain C   (VHL_HUMAN | P40337)
molecular function
    GO:0019899    enzyme binding    Interacting selectively and non-covalently with any enzyme.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0008134    transcription factor binding    Interacting selectively and non-covalently with a transcription factor, any protein required to initiate or regulate transcription.
    GO:0061630    ubiquitin protein ligase activity    Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues.
    GO:0004842    ubiquitin-protein transferase activity    Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
biological process
    GO:0000902    cell morphogenesis    The developmental process in which the size or shape of a cell is generated and organized.
    GO:0043066    negative regulation of apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
    GO:0008285    negative regulation of cell proliferation    Any process that stops, prevents or reduces the rate or extent of cell proliferation.
    GO:0000122    negative regulation of transcription from RNA polymerase II promoter    Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0061428    negative regulation of transcription from RNA polymerase II promoter in response to hypoxia    Any process that decreases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a hypoxia stimulus.
    GO:0045597    positive regulation of cell differentiation    Any process that activates or increases the frequency, rate or extent of cell differentiation.
    GO:0045893    positive regulation of transcription, DNA-templated    Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0050821    protein stabilization    Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation.
    GO:0016567    protein ubiquitination    The process in which one or more ubiquitin groups are added to a protein.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0061418    regulation of transcription from RNA polymerase II promoter in response to hypoxia    Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a hypoxia stimulus.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
cellular component
    GO:0030891    VCB complex    A protein complex that possesses ubiquitin ligase activity; the complex is usually pentameric; for example, in mammals the subunits are pVHL, elongin B, elongin C, cullin-2 (Cul2), and Rbx1.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005783    endoplasmic reticulum    The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain D   (HIF1A_HUMAN | Q16665)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0051879    Hsp90 protein binding    Interacting selectively and non-covalently with Hsp90 proteins, any of a group of heat shock proteins around 90kDa in size.
    GO:0000981    RNA polymerase II transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
    GO:0019899    enzyme binding    Interacting selectively and non-covalently with any enzyme.
    GO:0035035    histone acetyltransferase binding    Interacting selectively and non-covalently with the enzyme histone acetyltransferase.
    GO:0042826    histone deacetylase binding    Interacting selectively and non-covalently with the enzyme histone deacetylase.
    GO:0035257    nuclear hormone receptor binding    Interacting selectively and non-covalently with a nuclear hormone receptor, a ligand-dependent receptor found in the nucleus of the cell.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0032403    protein complex binding    Interacting selectively and non-covalently with any protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046983    protein dimerization activity    The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
    GO:0046982    protein heterodimerization activity    Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
    GO:0019901    protein kinase binding    Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate.
    GO:0043565    sequence-specific DNA binding    Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
    GO:0003705    transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding    Interacting selectively and non-covalently with a sequence of DNA that is in a distal enhancer region for RNA polymerase II (RNAP II) in order to modulate transcription by RNAP II.
    GO:0001076    transcription factor activity, RNA polymerase II transcription factor binding    Interacting selectively and non-covalently with an RNA polymerase II transcription factor, which may be a single protein or a complex, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well.
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
    GO:0000989    transcription factor activity, transcription factor binding    Interacting selectively and non-covalently with a specific transcription factor, which may be a single protein or a complex, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well.
    GO:0008134    transcription factor binding    Interacting selectively and non-covalently with a transcription factor, any protein required to initiate or regulate transcription.
    GO:0001077    transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding    Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II (RNAP II) in order to activate or increase the frequency, rate or extent of transcription from the RNAP II promoter.
    GO:0001228    transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding    Interacting selectively and non-covalently with a sequence of DNA that is in the transcription regulatory region for RNA polymerase II (RNAP II) in order to activate or increase the frequency, rate or extent of transcription from the RNAP II promoter.
    GO:0031625    ubiquitin protein ligase binding    Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
biological process
    GO:0001922    B-1 B cell homeostasis    The process of regulating the proliferation and elimination of B cells of the B-1 subset such that the total number of B-1 B cells within a whole or part of an organism is stable over time in the absence of an outside stimulus. B-1 B cells are a distinct subset of B cells characterized as being CD5 positive, found predominantly in the peritoneum, pleural cavities, and spleen, and enriched for self-reactivity.
    GO:0006953    acute-phase response    An acute inflammatory response that involves non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals.
    GO:0001525    angiogenesis    Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels.
    GO:0019896    axonal transport of mitochondrion    The directed movement of mitochondria along microtubules in nerve cell axons.
    GO:0001568    blood vessel development    The process whose specific outcome is the progression of a blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood.
    GO:0048514    blood vessel morphogenesis    The process in which the anatomical structures of blood vessels are generated and organized. The blood vessel is the vasculature carrying blood.
    GO:0048593    camera-type eye morphogenesis    The process in which the anatomical structures of the eye are generated and organized. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field.
    GO:0003208    cardiac ventricle morphogenesis    The process in which the cardiac ventricle is generated and organized. A cardiac ventricle receives blood from a cardiac atrium and pumps it out of the heart.
    GO:0051216    cartilage development    The process whose specific outcome is the progression of a cartilage element over time, from its formation to the mature structure. Cartilage elements are skeletal elements that consist of connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate.
    GO:0030154    cell differentiation    The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
    GO:0006879    cellular iron ion homeostasis    Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell.
    GO:0071245    cellular response to carbon monoxide    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbon monoxide (CO) stimulus.
    GO:0071279    cellular response to cobalt ion    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cobalt ion stimulus.
    GO:1903928    cellular response to cyanide    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cyanide stimulus.
    GO:0035690    cellular response to drug    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
    GO:0071257    cellular response to electrical stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electrical stimulus.
    GO:0071333    cellular response to glucose stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus.
    GO:0070301    cellular response to hydrogen peroxide    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus.
    GO:0071456    cellular response to hypoxia    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level.
    GO:0032869    cellular response to insulin stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms.
    GO:0071347    cellular response to interleukin-1    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-1 stimulus.
    GO:0071482    cellular response to light stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
    GO:0071396    cellular response to lipid    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipid stimulus.
    GO:0071222    cellular response to lipopolysaccharide    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria.
    GO:0071260    cellular response to mechanical stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus.
    GO:0071250    cellular response to nitrite    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrite stimulus.
    GO:0071407    cellular response to organic cyclic compound    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic compound stimulus.
    GO:0097237    cellular response to toxic substance    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxic stimulus.
    GO:0021987    cerebral cortex development    The progression of the cerebral cortex over time from its initial formation until its mature state. The cerebral cortex is the outer layered region of the telencephalon.
    GO:0032963    collagen metabolic process    The chemical reactions and pathways involving collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%).
    GO:0002248    connective tissue replacement involved in inflammatory response wound healing    The series of events leading to growth of connective tissue when loss of tissues that are incapable of regeneration occurs, or when fibrinous exudate cannot be adequately cleared that contribute to an inflammatory response.
    GO:0048546    digestive tract morphogenesis    The process in which the anatomical structures of the digestive tract are generated and organized. The digestive tract is the anatomical structure through which food passes and is processed.
    GO:0071542    dopaminergic neuron differentiation    The process in which a neuroblast acquires the specialized structural and functional features of a dopaminergic neuron, a neuron that secretes dopamine.
    GO:0051541    elastin metabolic process    The chemical reactions and pathways involving elastin, a glycoprotein which is randomly coiled and crosslinked to form elastic fibers that are found in connective tissue.
    GO:0035162    embryonic hemopoiesis    The stages of blood cell formation that take place within the embryo.
    GO:0001892    embryonic placenta development    The embryonically driven process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin.
    GO:0061030    epithelial cell differentiation involved in mammary gland alveolus development    The process in which a relatively unspecialized epithelial cell becomes a more specialized epithelial cell of the mammary gland alveolus.
    GO:0001837    epithelial to mesenchymal transition    A transition where an epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell.
    GO:0042593    glucose homeostasis    Any process involved in the maintenance of an internal steady state of glucose within an organism or cell.
    GO:0001947    heart looping    The tube morphogenesis process in which the primitive heart tube loops asymmetrically. This looping brings the primitive heart chambers into alignment preceding their future integration. Heart looping begins with dextral-looping and ends when the main regional divisions of the mature heart and primordium of the great arterial trunks become established preceeding septation.
    GO:0042541    hemoglobin biosynthetic process    The chemical reactions and pathways resulting in the formation of hemoglobin, an oxygen carrying, conjugated protein containing four heme groups and globin.
    GO:0097411    hypoxia-inducible factor-1alpha signaling pathway    A series of molecular signals mediated by hypoxia-inducible factor (HIF1) in response to lowered oxygen levels (hypoxia). Under hypoxic conditions, the oxygen-sensitive alpha-subunit of hypoxia-inducible factor (HIF)-1 dimerizes with a HIF1-beta subunit (also called ARNT or aryl-hydrocarbon-receptor nuclear translocator), translocates to the nucleus and activates transcription of genes whose products participate in responding to hypoxia.
    GO:0060574    intestinal epithelial cell maturation    The developmental process, independent of morphogenetic (shape) change, that is required for a columna/cuboidal epithelial cell of the intestine to attain its fully functional state. A columnar/cuboidal epithelial cell of the intestine mature as they migrate from the intestinal crypt to the villus.
    GO:0061072    iris morphogenesis    The process in which the iris is generated and organized. The iris is an anatomical structure in the eye whose opening forms the pupil. The iris is responsible for controlling the diameter and size of the pupil and the amount of light reaching the retina.
    GO:0006089    lactate metabolic process    The chemical reactions and pathways involving lactate, the anion of lactic acid.
    GO:0007595    lactation    The regulated release of milk from the mammary glands and the period of time that a mother lactates to feed her young.
    GO:0042789    mRNA transcription from RNA polymerase II promoter    The cellular synthesis of messenger RNA (mRNA) from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter.
    GO:0060135    maternal process involved in female pregnancy    A reproductive process occurring in the mother that allows an embryo or fetus to develop within it.
    GO:0046716    muscle cell cellular homeostasis    The cellular homeostatic process that preserves a muscle cell in a stable functional or structural state.
    GO:0032007    negative regulation of TOR signaling    Any process that stops, prevents, or reduces the frequency, rate or extent of TOR signaling.
    GO:0043066    negative regulation of apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
    GO:0030502    negative regulation of bone mineralization    Any process that stops, prevents, or reduces the frequency, rate or extent of bone mineralization.
    GO:0045926    negative regulation of growth    Any process that stops, prevents or reduces the rate or extent of growth, the increase in size or mass of all or part of an organism.
    GO:2001054    negative regulation of mesenchymal cell apoptotic process    Any process that stops, prevents or reduces the frequency, rate or extent of mesenchymal cell apoptotic process.
    GO:0043524    negative regulation of neuron apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process in neurons.
    GO:0030279    negative regulation of ossification    Any process that stops, prevents, or reduces the frequency, rate or extent of bone formation.
    GO:1903377    negative regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway    Any process that stops, prevents or reduces the frequency, rate or extent of oxidative stress-induced neuron intrinsic apoptotic signaling pathway.
    GO:2000378    negative regulation of reactive oxygen species metabolic process    Any process that stops, prevents or reduces the frequency, rate or extent of reactive oxygen species metabolic process.
    GO:0070244    negative regulation of thymocyte apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of thymocyte death by apoptotic process.
    GO:0000122    negative regulation of transcription from RNA polymerase II promoter    Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0045906    negative regulation of vasoconstriction    Any process that stops, prevents, or reduces the frequency, rate or extent of vasoconstriction.
    GO:0001755    neural crest cell migration    The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo.
    GO:0021502    neural fold elevation formation    The process in which the lateral borders of the neural plate begin to migrate upwards to form the neural folds, caused by the proliferation of the underlying mesoderm.
    GO:0003151    outflow tract morphogenesis    The process in which the anatomical structures of the outflow tract are generated and organized. The outflow tract is the portion of the heart through which blood flows into the arteries.
    GO:0032364    oxygen homeostasis    A homeostatic process involved in the maintenance of an internal steady state of oxygen within an organism or cell.
    GO:0045766    positive regulation of angiogenesis    Any process that activates or increases angiogenesis.
    GO:0043065    positive regulation of apoptotic process    Any process that activates or increases the frequency, rate or extent of cell death by apoptotic process.
    GO:0010508    positive regulation of autophagy    Any process that activates, maintains or increases the rate of autophagy. Autophagy is the process in which cells digest parts of their own cytoplasm.
    GO:0008284    positive regulation of cell proliferation    Any process that activates or increases the rate or extent of cell proliferation.
    GO:0045793    positive regulation of cell size    Any process that increases cell size.
    GO:0032722    positive regulation of chemokine production    Any process that activates or increases the frequency, rate, or extent of chemokine production.
    GO:0070101    positive regulation of chemokine-mediated signaling pathway    Any process that increases the rate, frequency or extent of the series of molecular events generated as a consequence of a chemokine binding to a cell surface receptor.
    GO:0001938    positive regulation of endothelial cell proliferation    Any process that activates or increases the rate or extent of endothelial cell proliferation.
    GO:0010634    positive regulation of epithelial cell migration    Any process that activates or increases the frequency, rate or extent of epithelial cell migration.
    GO:0045648    positive regulation of erythrocyte differentiation    Any process that activates or increases the frequency, rate or extent of erythrocyte differentiation.
    GO:0010628    positive regulation of gene expression    Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
    GO:0045821    positive regulation of glycolytic process    Any process that activates or increases the frequency, rate or extent of glycolysis.
    GO:0046886    positive regulation of hormone biosynthetic process    Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of hormones.
    GO:0035774    positive regulation of insulin secretion involved in cellular response to glucose stimulus    Any process that increases the frequency, rate or extent of the regulated release of insulin that contributes to the response of a cell to glucose.
    GO:0016239    positive regulation of macroautophagy    Any process, such as recognition of nutrient depletion, that activates or increases the rate of macroautophagy to bring cytosolic macromolecules to the vacuole/lysosome for degradation.
    GO:1903599    positive regulation of mitophagy    Any process that activates or increases the frequency, rate or extent of mitochondrion degradation.
    GO:0002052    positive regulation of neuroblast proliferation    Any process that activates or increases the rate of neuroblast proliferation.
    GO:0051000    positive regulation of nitric-oxide synthase activity    Any process that activates or increases the activity of the enzyme nitric-oxide synthase.
    GO:1902895    positive regulation of pri-miRNA transcription from RNA polymerase II promoter    Any process that activates or increases the frequency, rate or extent of pri-miRNA transcription from RNA polymerase II promoter.
    GO:0010870    positive regulation of receptor biosynthetic process    Any process that increases the frequency or rate of receptor biosynthesis. Receptor biosynthesis is the collection of chemical reactions and pathways resulting in the formation of a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
    GO:0048661    positive regulation of smooth muscle cell proliferation    Any process that activates or increases the rate or extent of smooth muscle cell proliferation.
    GO:0045944    positive regulation of transcription from RNA polymerase II promoter    Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0061419    positive regulation of transcription from RNA polymerase II promoter in response to hypoxia    Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a hypoxia stimulus.
    GO:0045893    positive regulation of transcription, DNA-templated    Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0010575    positive regulation of vascular endothelial growth factor production    Any process that increases or activates the frequency, rate, or extent of production of vascular endothelial growth factor.
    GO:0030949    positive regulation of vascular endothelial growth factor receptor signaling pathway    Any process that activates or increases the frequency, rate or extent of vascular endothelial growth factor receptor signaling pathway activity.
    GO:1903715    regulation of aerobic respiration    Any process that modulates the frequency, rate or extent of aerobic respiration.
    GO:0050790    regulation of catalytic activity    Any process that modulates the activity of an enzyme.
    GO:0042127    regulation of cell proliferation    Any process that modulates the frequency, rate or extent of cell proliferation.
    GO:1900037    regulation of cellular response to hypoxia    Any process that modulates the frequency, rate or extent of cellular response to hypoxia.
    GO:0010468    regulation of gene expression    Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
    GO:0006110    regulation of glycolytic process    Any process that modulates the frequency, rate or extent of glycolysis.
    GO:0070243    regulation of thymocyte apoptotic process    Any process that modulates the occurrence or rate of thymocyte death by apoptotic process.
    GO:0061418    regulation of transcription from RNA polymerase II promoter in response to hypoxia    Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a hypoxia stimulus.
    GO:0043619    regulation of transcription from RNA polymerase II promoter in response to oxidative stress    Modulation of the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0032909    regulation of transforming growth factor beta2 production    Any process that modulates the frequency, rate, or extent of production of transforming growth factor-beta2.
    GO:0010165    response to X-ray    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of X-ray radiation. An X-ray is a form of electromagnetic radiation with a wavelength in the range of 10 nanometers to 100 picometers (corresponding to frequencies in the range 30 PHz to 3 EHz).
    GO:0014823    response to activity    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an activity stimulus.
    GO:0043279    response to alkaloid    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alkaloid stimulus. Alkaloids are a large group of nitrogenous substances found in naturally in plants, many of which have extracts that are pharmacologically active.
    GO:0072347    response to anesthetic    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an anesthetic stimulus. An anesthetic is a substance that causes loss of feeling, awareness, or sensation.
    GO:0010996    response to auditory stimulus    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auditory stimulus.
    GO:0032025    response to cobalt ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cobalt ion stimulus.
    GO:0042493    response to drug    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
    GO:0032355    response to estradiol    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen.
    GO:0043627    response to estrogen    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics.
    GO:0060992    response to fungicide    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fungicide stimulus. Fungicides are chemicals used to kill fungi.
    GO:0051384    response to glucocorticoid    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects.
    GO:0009749    response to glucose    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus.
    GO:0001666    response to hypoxia    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level.
    GO:0009612    response to mechanical stimulus    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus.
    GO:0014850    response to muscle activity    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a muscle activity stimulus.
    GO:0014074    response to purine-containing compound    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a purine-containing compound stimulus.
    GO:0009651    response to salt stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
    GO:0061298    retina vasculature development in camera-type eye    The process whose specific outcome is the progression of the vasculature of the retina over time, from its formation to the mature structure.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0006366    transcription from RNA polymerase II promoter    The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0010573    vascular endothelial growth factor production    The appearance of vascular endothelial growth factor production due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.
    GO:0001944    vasculature development    The process whose specific outcome is the progression of the vasculature over time, from its formation to the mature structure. The vasculature is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the organism.
    GO:0008542    visual learning    Any process in an organism in which a change in behavior of an individual occurs in response to repeated exposure to a visual cue.
cellular component
    GO:0090575    RNA polymerase II transcription factor complex    A transcription factor complex that acts at promoters of genes transcribed by RNA polymerase II.
    GO:1904115    axon cytoplasm    Any cytoplasm that is part of a axon.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0031514    motile cilium    A cilium which may have a variable arrangement of axonemal microtubules and also contains molecular motors. It may beat with a whip-like pattern that promotes cell motility or transport of fluids and other cells across a cell surface, such as on epithelial cells that line the lumenal ducts of various tissues; or they may display a distinct twirling motion that directs fluid flow asymmetrically across the cellular surface to affect asymmetric body plan organization. Motile cilia can be found in single as well as multiple copies per cell.
    GO:0016607    nuclear speck    A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005667    transcription factor complex    A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        ELOB_HUMAN | Q153701lm8 1vcb 2c9w 2izv 2jz3 2ma9 3dcg 3zkj 3zng 3zrc 3zrf 3ztc 3ztd 3zun 4ajy 4awj 4b95 4b9k 4bks 4bkt 4n9f 4w9c 4w9d 4w9e 4w9f 4w9g 4w9h 4w9i 4w9j 4w9k 4w9l 4wqo 5bo4 5lli 5n4w 5t35
        ELOC_HUMAN | Q153691lm8 1vcb 2c9w 2izv 2ma9 3dcg 3zkj 3zng 3zrc 3zrf 3ztc 3ztd 3zun 4ajy 4awj 4b95 4b9k 4bks 4bkt 4n9f 4w9c 4w9d 4w9e 4w9f 4w9g 4w9h 4w9i 4w9j 4w9k 4w9l 4wqo 5bo4 5lli 5n4w 5t35
        HIF1A_HUMAN | Q166651d7g 1h2k 1h2l 1h2m 1l3e 1l8c 1lm8 2ilm 3hqr 3hqu 4ajy 4h6j 5jwp 5l9b 5l9v 5la9 5las
        VHL_HUMAN | P403371lm8 1vcb 3zrc 3zrf 3ztc 3ztd 3zun 4ajy 4awj 4b95 4b9k 4bks 4bkt 4w9c 4w9d 4w9e 4w9f 4w9g 4w9h 4w9i 4w9j 4w9k 4w9l 4wqo 5lli 5n4w 5t35

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1LQB)