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(-) Description

Title :  STRUCTURAL GENOMICS OF CAENORHABDITIS ELEGANS: CAP-GLY DOMAIN OF F53F4.3
 
Authors :  S. Li, J. Finley, Z. -J. Liu, S. H. Qiu, C. H. Luan, M. Carson, J. Tsao, D. Johnson, G. Lin, J. Zhao, W. Thomas, L. A. Nagy, B. Sha, L. J. Delucas, B. -C. Wang, M. Luo, Southeast Collaboratory For Structural Genomics (Secsg)
Date :  08 May 02  (Deposition) - 22 May 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.77
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Cap-Gly Domain, Cytoskeleton, Tubulin, Psi, Protein Structure Initiative, Southeast Collaboratory For Structural Genomics, Secsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Li, J. Finley, Z. -J. Liu, S. H. Qiu, C. H. Luan, M. Carson, J. Tsao, D. Johnson, G. Lin, J. Zhao, W. Thomas, L. A. Nagy, B. Sha, L. J. Delucas, B. -C. Wang, M. Luo
Crystal Structure Of The Cytoskeleton-Associated Protein Glycine-Rich (Cap-Gly) Domain
J. Biol. Chem. V. 277 48596 2002
PubMed-ID: 12221106  |  Reference-DOI: 10.1074/JBC.M208512200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL 25.4 KDA PROTEIN F53F4.3 IN CHROMOSOME V
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PDEST 17.1
    Fragment: CAP-GLY DOMAIN
    Gene: F53F4.3
    Organism Scientific: CAENORHABDITIS ELEGANS
    Organism Taxid: 6239

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1LPL)

(-) Sites  (0, 0)

(no "Site" information available for 1LPL)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1LPL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1LPL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1LPL)

(-) PROSITE Motifs  (2, 2)

Asymmetric/Biological Unit (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CAP_GLY_1PS00845 CAP-Gly domain signature.TBCB_CAEEL170-201  1A:170-201
2CAP_GLY_2PS50245 CAP-Gly domain profile.TBCB_CAEEL170-212  1A:170-212

(-) Exons   (0, 0)

(no "Exon" information available for 1LPL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:95
 aligned with TBCB_CAEEL | Q20728 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:95
                                   144       154       164       174       184       194       204       214       224     
           TBCB_CAEEL   135 SDKLNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCDPKYGGFVRPVDVKVGDFPELSIDEI 229
               SCOP domains d1lpla_ A: Cytoskeleton-associated protein F53F4.3                                              SCOP domains
               CATH domains 1lplA00 A:135-229  [code=2.30.30.190, no name defined]                                          CATH domains
               Pfam domains -------------CAP_GLY-1lplA01 A:148-217                                             ------------ Pfam domains
         Sec.struct. author .hhhhhhhhh......eeee.......eeeeeeeee........eeeeee.........ee..ee........eeeehhh.eee........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------------------------CAP_GLY_1  PDB: A:170-201       ---------------------------- PROSITE (1)
                PROSITE (2) -----------------------------------CAP_GLY_2  PDB: A:170-212 UniProt: 170-212 ----------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 1lpl A 135 SDKLNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCDPKYGGFVRPVDVKVGDFPELSIDEI 229
                                   144       154       164       174       184       194       204       214       224
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: CAP_GLY] (11)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (TBCB_CAEEL | Q20728)
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005874    microtubule    Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.

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 Related Entries

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UniProtKB/Swiss-Prot
        TBCB_CAEEL | Q20728: 1t0y 1tov

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