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(-) Description

Title :  STRUCTURE OF A TERNARY COMPLEX OF AN ALLOSTERIC LACTATE DEHYDROGENASE FROM BACILLUS STEAROTHERMOPHILUS AT 2.5 ANGSTROMS RESOLUTION
 
Authors :  D. B. Wigley, S. J. Gamblin, J. P. Turkenburg, E. J. Dodson, K. Piontek, H. Muirhead, J. J. Holbrook
Date :  19 Nov 91  (Deposition) - 31 Jan 94  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Oxidoreductase(Choh(D)-Nad(A)) (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. B. Wigley, S. J. Gamblin, J. P. Turkenburg, E. J. Dodson, K. Piontek, H. Muirhead, J. J. Holbrook
Structure Of A Ternary Complex Of An Allosteric Lactate Dehydrogenase From Bacillus Stearothermophilus At 2. 5 A Resolution.
J. Mol. Biol. V. 223 317 1992
PubMed-ID: 1731077  |  Reference-DOI: 10.1016/0022-2836(92)90733-Z
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - L-LACTATE DEHYDROGENASE
    Chains: A, B, C, D, E, F, G, H
    EC Number: 1.1.1.27
    Engineered: YES
    Organism Scientific: GEOBACILLUS STEAROTHERMOPHILUS
    Organism Taxid: 1422

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): ABCD    
Biological Unit 2 (1x):     EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 20)

Asymmetric Unit (3, 20)
No.NameCountTypeFull Name
1FBP4Ligand/IonBETA-FRUCTOSE-1,6-DIPHOSPHATE
2NAD8Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
3OXM8Ligand/IonOXAMIC ACID
Biological Unit 1 (3, 10)
No.NameCountTypeFull Name
1FBP2Ligand/IonBETA-FRUCTOSE-1,6-DIPHOSPHATE
2NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
3OXM4Ligand/IonOXAMIC ACID
Biological Unit 2 (3, 10)
No.NameCountTypeFull Name
1FBP2Ligand/IonBETA-FRUCTOSE-1,6-DIPHOSPHATE
2NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
3OXM4Ligand/IonOXAMIC ACID

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:171 , GLN A:183 , ASN A:184 , HIS A:186 , GLN C:183 , ASN C:184 , HIS C:186BINDING SITE FOR RESIDUE FBP A 353
02AC2SOFTWAREGLN B:183 , ASN B:184 , HIS B:186 , ARG D:171 , GLN D:183 , ASN D:184 , HIS D:186BINDING SITE FOR RESIDUE FBP B 353
03AC3SOFTWAREARG E:171 , GLN E:183 , ASN E:184 , HIS E:186 , GLN G:183 , HIS G:186BINDING SITE FOR RESIDUE FBP E 353
04AC4SOFTWAREARG F:171 , GLN F:183 , ASN F:184 , HIS F:186 , ARG H:171 , GLN H:183 , ASN H:184 , HIS H:186BINDING SITE FOR RESIDUE FBP F 353
05AC5SOFTWAREARG A:106 , ASN A:138 , LEU A:165 , ARG A:169 , HIS A:193 , ALA A:237 , THR A:247 , NAD A:352 , HOH A:369BINDING SITE FOR RESIDUE OXM A 351
06AC6SOFTWAREGLY A:27 , GLY A:29 , PHE A:30 , VAL A:31 , ASP A:52 , ALA A:53 , CYS A:95 , ALA A:96 , GLY A:97 , ALA A:98 , ASN A:99 , ALA A:136 , THR A:137 , ASN A:138 , SER A:161 , HIS A:193 , THR A:247 , ILE A:251 , OXM A:351 , HOH A:364 , HOH A:368 , HOH A:370 , HOH A:382 , HOH A:408 , HOH A:409BINDING SITE FOR RESIDUE NAD A 352
07AC7SOFTWAREGLN B:100 , ARG B:106 , ASN B:138 , ARG B:169 , HIS B:193 , ALA B:237 , THR B:247 , NAD B:352BINDING SITE FOR RESIDUE OXM B 351
08AC8SOFTWAREGLY B:29 , PHE B:30 , VAL B:31 , ASP B:52 , ALA B:53 , CYS B:95 , ALA B:96 , GLY B:97 , ALA B:98 , ASN B:99 , ILE B:116 , ALA B:136 , THR B:137 , ASN B:138 , SER B:161 , HIS B:193 , ILE B:251 , OXM B:351 , HOH B:358 , HOH B:367 , HOH B:371BINDING SITE FOR RESIDUE NAD B 352
09AC9SOFTWAREGLN C:100 , ARG C:106 , ASN C:138 , LEU C:165 , ARG C:169 , HIS C:193 , ALA C:237 , THR C:247 , NAD C:352BINDING SITE FOR RESIDUE OXM C 351
10BC1SOFTWAREGLY C:29 , PHE C:30 , VAL C:31 , ASP C:52 , ALA C:53 , CYS C:95 , ALA C:96 , GLY C:97 , ALA C:98 , ASN C:99 , ILE C:120 , ALA C:136 , THR C:137 , ASN C:138 , VAL C:140 , SER C:161 , HIS C:193 , ILE C:251 , OXM C:351 , HOH C:361 , HOH C:367 , HOH C:371 , HOH C:373 , HOH C:385 , HOH C:410BINDING SITE FOR RESIDUE NAD C 352
11BC2SOFTWAREARG D:106 , ASN D:138 , ARG D:169 , HIS D:193 , ALA D:237 , THR D:247 , NAD D:352BINDING SITE FOR RESIDUE OXM D 351
12BC3SOFTWAREGLY D:27 , GLY D:29 , PHE D:30 , VAL D:31 , ASP D:52 , ALA D:53 , ASN D:54 , ALA D:96 , GLY D:97 , ALA D:98 , ASN D:99 , ALA D:136 , THR D:137 , ASN D:138 , VAL D:140 , SER D:161 , HIS D:193 , ILE D:251 , OXM D:351 , HOH D:372 , HOH D:376 , HOH D:390 , HOH D:416 , HOH D:417BINDING SITE FOR RESIDUE NAD D 352
13BC4SOFTWAREARG E:106 , ASN E:138 , LEU E:165 , ARG E:169 , HIS E:193 , ALA E:237 , THR E:247 , NAD E:352 , HOH E:369BINDING SITE FOR RESIDUE OXM E 351
14BC5SOFTWAREALA E:28 , GLY E:29 , PHE E:30 , VAL E:31 , ASP E:52 , ALA E:53 , CYS E:95 , ALA E:96 , GLY E:97 , ALA E:98 , ASN E:99 , ASN E:113 , ILE E:116 , ALA E:136 , THR E:137 , ASN E:138 , SER E:161 , LEU E:165 , HIS E:193 , THR E:247 , ILE E:251 , OXM E:351 , HOH E:363 , HOH E:367 , HOH E:381 , HOH E:407 , HOH E:408BINDING SITE FOR RESIDUE NAD E 352
15BC6SOFTWAREGLN F:100 , ARG F:106 , ASN F:138 , ARG F:169 , HIS F:193 , THR F:247 , NAD F:352BINDING SITE FOR RESIDUE OXM F 351
16BC7SOFTWAREGLY F:29 , PHE F:30 , VAL F:31 , ASP F:52 , ALA F:53 , CYS F:95 , GLY F:97 , ALA F:98 , ASN F:99 , ILE F:116 , ALA F:136 , THR F:137 , ASN F:138 , SER F:161 , HIS F:193 , THR F:247 , ILE F:251 , OXM F:351 , HOH F:359 , HOH F:365 , HOH F:369 , HOH F:371 , HOH F:383 , HOH F:408 , HOH F:409BINDING SITE FOR RESIDUE NAD F 352
17BC8SOFTWAREGLN G:100 , ARG G:106 , ASN G:138 , ARG G:169 , HIS G:193 , THR G:247 , NAD G:352BINDING SITE FOR RESIDUE OXM G 351
18BC9SOFTWAREGLY G:27 , ALA G:28 , GLY G:29 , PHE G:30 , VAL G:31 , ASP G:52 , ALA G:53 , CYS G:95 , ALA G:96 , GLY G:97 , ALA G:98 , ILE G:116 , ALA G:136 , THR G:137 , ASN G:138 , SER G:161 , HIS G:193 , THR G:247 , ILE G:251 , OXM G:351 , HOH G:434 , HOH G:450 , HOH G:452 , HOH G:464 , HOH G:491 , HOH G:492BINDING SITE FOR RESIDUE NAD G 352
19CC1SOFTWAREGLN H:100 , ARG H:106 , ASN H:138 , ARG H:169 , HIS H:193 , ALA H:237 , THR H:247 , NAD H:352 , HOH H:378BINDING SITE FOR RESIDUE OXM H 351
20CC2SOFTWAREALA H:28 , GLY H:29 , PHE H:30 , VAL H:31 , ASP H:52 , ALA H:53 , CYS H:95 , ALA H:96 , GLY H:97 , ALA H:98 , ASN H:99 , ILE H:116 , ILE H:120 , ALA H:136 , THR H:137 , ASN H:138 , SER H:161 , HIS H:193 , THR H:247 , ILE H:251 , OXM H:351 , HOH H:365 , HOH H:377 , HOH H:379 , HOH H:416 , HOH H:417BINDING SITE FOR RESIDUE NAD H 352

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1LDN)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Asn A:138 -Pro A:139
2Asn B:138 -Pro B:139
3Asn C:138 -Pro C:139
4Asn D:138 -Pro D:139
5Asn E:138 -Pro E:139
6Asn F:138 -Pro F:139
7Asn G:138 -Pro G:139
8Asn H:138 -Pro H:139

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1LDN)

(-) PROSITE Motifs  (1, 8)

Asymmetric Unit (1, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1L_LDHPS00064 L-lactate dehydrogenase active site.LDH_GEOSE176-182
 
 
 
 
 
 
 		  8A:190-196
B:190-196
C:190-196
D:190-196
E:190-196
F:190-196
G:190-196
H:190-196
Biological Unit 1 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1L_LDHPS00064 L-lactate dehydrogenase active site.LDH_GEOSE176-182
 
 
 
 
 
 
 		  4A:190-196
B:190-196
C:190-196
D:190-196
-
-
-
-
Biological Unit 2 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1L_LDHPS00064 L-lactate dehydrogenase active site.LDH_GEOSE176-182
 
 
 
 
 
 
 		  4-
-
-
-
E:190-196
F:190-196
G:190-196
H:190-196

(-) Exons   (0, 0)

(no "Exon" information available for 1LDN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:316
 aligned with LDH_GEOSE | P00344 from UniProtKB/Swiss-Prot  Length:317

    Alignment length:316
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310      
            LDH_GEOSE     1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLARAFT 316
               SCOP domains d1ldna1 A:15-162 Lactate dehydrogenase                                                                                                              d1ldna2 A:163-330 Lactate dehydrogenase                                                                                                                                  SCOP domains
               CATH domains 1ldnA01 A:15-162 NAD(P)-binding Rossmann-like Domain                                                                                                1ldnA02 A:163-330 L-2-Hydroxyisocaproate Dehydrogenase, subunit A, domain 2                                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee..hhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhhh.......eeee.hhhhh....eeee...........hhhhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhh.hhh.eee..hhhhhhhhhhhhhhhhh.hhh.eeeeee.......eeeeeeeee..ee....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...eeeeeeeeee.....eeeeeeeeeeee..eeeee.....hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L_LDH  -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ldn A  15 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLARAFT 330
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324      


Chain B from PDB  Type:PROTEIN  Length:316
 aligned with LDH_GEOSE | P00344 from UniProtKB/Swiss-Prot  Length:317

    Alignment length:316
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310      
            LDH_GEOSE     1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLARAFT 316
               SCOP domains d1ldnb1 B:15-162 Lactate dehydrogenase                                                                                                              d1ldnb2 B:163-330 Lactate dehydrogenase                                                                                                                                  SCOP domains
               CATH domains 1ldnB01 B:15-162 NAD(P)-binding Rossmann-like Domain                                                                                                1ldnB02 B:163-330 L-2-Hydroxyisocaproate Dehydrogenase, subunit A, domain 2                                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee..hhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhhhhhh.....eee..hhhhhh..eeee..........hhhhhhhhhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhh.hhh.eee..hhhhhhhhhhhhhhhhh.hhh.eeeeee.......eeeeeeeee..ee...hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...eeeeeeeeee.....eeeeeeeeeeee..eeeee.....hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L_LDH  -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ldn B  15 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLARAFT 330
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324      


Chain C from PDB  Type:PROTEIN  Length:316
 aligned with LDH_GEOSE | P00344 from UniProtKB/Swiss-Prot  Length:317

    Alignment length:316
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310      
            LDH_GEOSE     1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLARAFT 316
               SCOP domains d1ldnc1 C:15-162 Lactate dehydrogenase                                                                                                              d1ldnc2 C:163-330 Lactate dehydrogenase                                                                                                                                  SCOP domains
               CATH domains 1ldnC01 C:15-162 NAD(P)-binding Rossmann-like Domain                                                                                                1ldnC02 C:163-330 L-2-Hydroxyisocaproate Dehydrogenase, subunit A, domain 2                                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee..hhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhh.........eeee.hhhhhhhh.eeee..........hhhhhhhhhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhh...hhh.eee..hhhhhhhhhhhhhhhhh.hhh.ee..ee.......ee.hhh.ee..ee..........hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...eeeeeeeeee.....eeeeeeeeeeee..eeeee.....hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L_LDH  -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ldn C  15 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLARAFT 330
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324      


Chain D from PDB  Type:PROTEIN  Length:316
 aligned with LDH_GEOSE | P00344 from UniProtKB/Swiss-Prot  Length:317

    Alignment length:316
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310      
            LDH_GEOSE     1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLARAFT 316
               SCOP domains d1ldnd1 D:15-162 Lactate dehydrogenase                                                                                                              d1ldnd2 D:163-330 Lactate dehydrogenase                                                                                                                                  SCOP domains
               CATH domains 1ldnD01 D:15-162 NAD(P)-binding Rossmann-like Domain                                                                                                1ldnD02 D:163-330 L-2-Hydroxyisocaproate Dehydrogenase, subunit A, domain 2                                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee..hhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhhhhhh....eeee.hhhhh....eeee...........hhhhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhh.hhh.eee..hhhhhhhhhhhhhhhh..hhh.ee..ee.......ee.hhh.ee..ee..........hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...eeeeeeeeee.....eeeeeeeeeeee..eeeee.....hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L_LDH  -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ldn D  15 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLARAFT 330
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324      


Chain E from PDB  Type:PROTEIN  Length:316
 aligned with LDH_GEOSE | P00344 from UniProtKB/Swiss-Prot  Length:317

    Alignment length:316
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310      
            LDH_GEOSE     1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLARAFT 316
               SCOP domains d1ldne1 E:15-162 Lactate dehydrogenase                                                                                                              d1ldne2 E:163-330 Lactate dehydrogenase                                                                                                                                  SCOP domains
               CATH domains 1ldnE01 E:15-162 NAD(P)-binding Rossmann-like Domain                                                                                                1ldnE02 E:163-330 L-2-Hydroxyisocaproate Dehydrogenase, subunit A, domain 2                                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee..hhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhhhhhh.....eee.hhhhhh...eeee..........hhhhhhhhhhhhhhhhhhhhhhh....eeee...hhhhhhhhhhhhhh.....eee..hhhhhhhhhhhhhhhhh.hhh.ee..ee.......ee.....ee..ee....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...eeeeeeeeee.....eeeeeeeeeeee..eeeee.....hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L_LDH  -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ldn E  15 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLARAFT 330
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324      


Chain F from PDB  Type:PROTEIN  Length:316
 aligned with LDH_GEOSE | P00344 from UniProtKB/Swiss-Prot  Length:317

    Alignment length:316
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310      
            LDH_GEOSE     1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLARAFT 316
               SCOP domains d1ldnf1 F:15-162 Lactate dehydrogenase                                                                                                              d1ldnf2 F:163-330 Lactate dehydrogenase                                                                                                                                  SCOP domains
               CATH domains 1ldnF01 F:15-162 NAD(P)-binding Rossmann-like Domain                                                                                                1ldnF02 F:163-330 L-2-Hydroxyisocaproate Dehydrogenase, subunit A, domain 2                                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee..hhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhhhhhh.....eee.hhhhhh...eeee..........hhhhhhhhhhhhhhhhhhhhhhh....eeee...hhhhhhhhhhhhhh.hhh.eee..hhhhhhhhhhhhhhhhh.hhh.ee..ee.......ee.hhh.ee..ee..........hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...eeeeeeeeee.....eeeeeeeeeeee..eeeee.....hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L_LDH  -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ldn F  15 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLARAFT 330
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324      


Chain G from PDB  Type:PROTEIN  Length:316
 aligned with LDH_GEOSE | P00344 from UniProtKB/Swiss-Prot  Length:317

    Alignment length:316
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310      
            LDH_GEOSE     1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLARAFT 316
               SCOP domains d1ldng1 G:15-162 Lactate dehydrogenase                                                                                                              d1ldng2 G:163-330 Lactate dehydrogenase                                                                                                                                  SCOP domains
               CATH domains 1ldnG01 G:15-162 NAD(P)-binding Rossmann-like Domain                                                                                                1ldnG02 G:163-330 L-2-Hydroxyisocaproate Dehydrogenase, subunit A, domain 2                                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee..hhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhh........eeee.hhhhhhhh.eeee...........hhhhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhh.hhh.eee..hhhhhhhhhhhhhhhhh.hhh.ee..ee.......ee.hhh.ee..ee....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...eeeeeeeeee.....eeeeeeeeeeee..eeeee.....hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L_LDH  -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ldn G  15 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLARAFT 330
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324      


Chain H from PDB  Type:PROTEIN  Length:316
 aligned with LDH_GEOSE | P00344 from UniProtKB/Swiss-Prot  Length:317

    Alignment length:316
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310      
            LDH_GEOSE     1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLARAFT 316
               SCOP domains d1ldnh1 H:15-162 Lactate dehydrogenase                                                                                                              d1ldnh2 H:163-330 Lactate dehydrogenase                                                                                                                                  SCOP domains
               CATH domains 1ldnH01 H:15-162 NAD(P)-binding Rossmann-like Domain                                                                                                1ldnH02 H:163-330 L-2-Hydroxyisocaproate Dehydrogenase, subunit A, domain 2                                                                                              CATH domains
           Pfam domains (1) ------Ldh_1_N-1ldnH09 H:21-161                                                                                                                     -Ldh_1_C-1ldnH01 H:163-330                                                                                                                                                Pfam domains (1)
           Pfam domains (2) ------Ldh_1_N-1ldnH10 H:21-161                                                                                                                     -Ldh_1_C-1ldnH02 H:163-330                                                                                                                                                Pfam domains (2)
           Pfam domains (3) ------Ldh_1_N-1ldnH11 H:21-161                                                                                                                     -Ldh_1_C-1ldnH03 H:163-330                                                                                                                                                Pfam domains (3)
           Pfam domains (4) ------Ldh_1_N-1ldnH12 H:21-161                                                                                                                     -Ldh_1_C-1ldnH04 H:163-330                                                                                                                                                Pfam domains (4)
           Pfam domains (5) ------Ldh_1_N-1ldnH13 H:21-161                                                                                                                     -Ldh_1_C-1ldnH05 H:163-330                                                                                                                                                Pfam domains (5)
           Pfam domains (6) ------Ldh_1_N-1ldnH14 H:21-161                                                                                                                     -Ldh_1_C-1ldnH06 H:163-330                                                                                                                                                Pfam domains (6)
           Pfam domains (7) ------Ldh_1_N-1ldnH15 H:21-161                                                                                                                     -Ldh_1_C-1ldnH07 H:163-330                                                                                                                                                Pfam domains (7)
           Pfam domains (8) ------Ldh_1_N-1ldnH16 H:21-161                                                                                                                     -Ldh_1_C-1ldnH08 H:163-330                                                                                                                                                Pfam domains (8)
         Sec.struct. author .......eeeee..hhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhhhhhh....eeee.hhhhhhhh.eeee...........hhhhhhhhhhhhhhhhhhhhh.....eeee...hhhhhhhhhhhhhh.hhh.eee..hhhhhhhhhhhhhhhhh.hhh.ee..ee.......ee.hhh.ee..ee....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...eeeeeeeeee.....eeeeeeeeeeee..eeeee.....hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L_LDH  -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ldn H  15 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLARAFT 330
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 16)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 16)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 16)

Asymmetric Unit
(-)
Clan: LDH_C (56)
(-)
Clan: NADP_Rossmann (1239)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (LDH_GEOSE | P00344)
molecular function
    GO:0004459    L-lactate dehydrogenase activity    Catalysis of the reaction: (S)-lactate + NAD+ = pyruvate + NADH + H+.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016616    oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0019752    carboxylic acid metabolic process    The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).
    GO:0006096    glycolytic process    The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  1ldn
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  LDH_GEOSE | P00344
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  1.1.1.27
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LDH_GEOSE | P00344: 1ldb 2ldb

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1LDN)