1L9X - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   STRUCTURE OF GAMMA-GLUTAMYL HYDROLASE

Authors :   H. Li, T. J. Ryan, K. J. Chave, P. Van Roey

Date :   26 Mar 02 (Deposition) - 10 Apr 02 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.60

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Gamma-Glutamyl Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. Li, T. J. Ryan, K. J. Chave, P. Van Roey
Three-Dimensional Structure Of Human Gamma -Glutamyl Hydrolase. A Class I Glatamine Amidotransferase Adapted For A Complex Substate.
J. Biol. Chem. V. 277 24522 2002
PubMed-ID: 11953431 | Reference-DOI: 10.1074/JBC.M202020200
(for further references see the PDB file header)

Molecule 1 - GAMMA-GLUTAMYL HYDROLASE
	Chains	:	A, B, C, D
	EC Number	:	3.4.19.9
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 6)

No.	Name	Count	Type	Full Name
1	BME	6	Ligand/Ion	BETA-MERCAPTOETHANOL

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	BME	1	Ligand/Ion	BETA-MERCAPTOETHANOL

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	BME	2	Ligand/Ion	BETA-MERCAPTOETHANOL

Biological Unit 3 (1, 2)

No.	Name	Count	Type	Full Name
1	BME	2	Ligand/Ion	BETA-MERCAPTOETHANOL

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	BME	1	Ligand/Ion	BETA-MERCAPTOETHANOL

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:77 , LEU A:78 , ARG A:79 , CYS A:124	BINDING SITE FOR RESIDUE BME A 1001
2	AC2	SOFTWARE	GLY B:73 , GLY B:74 , CYS B:110 , LEU B:111 , PHE B:170 , HIS B:220 , HOH B:1061	BINDING SITE FOR RESIDUE BME B 1002
3	AC3	SOFTWARE	LEU B:118 , CYS B:124 , LEU B:126	BINDING SITE FOR RESIDUE BME B 1003
4	AC4	SOFTWARE	GLY C:73 , GLY C:74 , CYS C:110 , LEU C:111 , PHE C:170 , HIS C:220	BINDING SITE FOR RESIDUE BME C 1004
5	AC5	SOFTWARE	LEU C:118 , CYS C:124 , LEU C:126	BINDING SITE FOR RESIDUE BME C 1005
6	AC6	SOFTWARE	GLU D:114 , CYS D:124 , LEU D:126	BINDING SITE FOR RESIDUE BME D 1006

(no "SS Bond" information available for 1L9X)

(no "Cis Peptide Bond" information available for 1L9X)

Asymmetric Unit (2, 8)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_029230	A	31	T	GGH_HUMAN	Polymorphism	11545077	A/B/C/D	A	7	T
2	UniProt	VAR_029231	T	151	I	GGH_HUMAN	Polymorphism	11545078	A/B/C/D	T	127	I

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_029230	A	31	T	GGH_HUMAN	Polymorphism	11545077	A	A	7	T
2	UniProt	VAR_029231	T	151	I	GGH_HUMAN	Polymorphism	11545078	A	T	127	I

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_029230	A	31	T	GGH_HUMAN	Polymorphism	11545077	B	A	7	T
2	UniProt	VAR_029231	T	151	I	GGH_HUMAN	Polymorphism	11545078	B	T	127	I

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_029230	A	31	T	GGH_HUMAN	Polymorphism	11545077	C	A	7	T
2	UniProt	VAR_029231	T	151	I	GGH_HUMAN	Polymorphism	11545078	C	T	127	I

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 4 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_029230	A	31	T	GGH_HUMAN	Polymorphism	11545077	D	A	7	T
2	UniProt	VAR_029231	T	151	I	GGH_HUMAN	Polymorphism	11545078	D	T	127	I

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PEPTIDASE_C26_GGH	PS51275	Gamma-glutamyl hydrolase domain profile.	GGH_HUMAN	25-318	2	B:7-294 D:7-294

Biological Unit 1 (, 0)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PEPTIDASE_C26_GGH	PS51275	Gamma-glutamyl hydrolase domain profile.	GGH_HUMAN	25-318	0	- -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PEPTIDASE_C26_GGH	PS51275	Gamma-glutamyl hydrolase domain profile.	GGH_HUMAN	25-318	1	B:7-294 -

Biological Unit 3 (, 0)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PEPTIDASE_C26_GGH	PS51275	Gamma-glutamyl hydrolase domain profile.	GGH_HUMAN	25-318	0	- -

Biological Unit 4 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PEPTIDASE_C26_GGH	PS51275	Gamma-glutamyl hydrolase domain profile.	GGH_HUMAN	25-318	1	- D:7-294

Asymmetric Unit (9, 36)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000260118	1a	ENSE00001319126	chr8:63951730-63951219	512	GGH_HUMAN	1-37	37	4	A:7-13 B:-8-13 (gaps) C:7-13 D:-8-13 (gaps)	7 26 7 26
1.2	ENST00000260118	2	ENSE00000928434	chr8:63948329-63948215	115	GGH_HUMAN	37-75	39	4	A:13-51 B:13-51 C:13-51 D:13-51	39 39 39 39
1.3a	ENST00000260118	3a	ENSE00000928433	chr8:63942776-63942726	51	GGH_HUMAN	75-92	18	4	A:51-68 B:51-68 C:51-68 D:51-68	18 18 18 18
1.5b	ENST00000260118	5b	ENSE00000928432	chr8:63939824-63939740	85	GGH_HUMAN	92-120	29	4	A:68-96 B:68-96 C:68-96 D:68-96	29 29 29 29
1.6a	ENST00000260118	6a	ENSE00000928431	chr8:63938855-63938717	139	GGH_HUMAN	121-167	47	4	A:97-143 B:97-143 C:97-143 D:97-143	47 47 47 47
1.7a	ENST00000260118	7a	ENSE00002148908	chr8:63936745-63936639	107	GGH_HUMAN	167-202	36	4	A:143-178 B:143-178 C:143-178 D:143-178	36 36 36 36
1.7c	ENST00000260118	7c	ENSE00000928429	chr8:63936556-63936466	91	GGH_HUMAN	203-233	31	4	A:179-209 B:179-209 C:179-209 D:179-209	31 31 31 31
1.9b	ENST00000260118	9b	ENSE00000928428	chr8:63930189-63930052	138	GGH_HUMAN	233-279	47	4	A:209-255 B:209-255 C:209-255 D:209-255	47 47 47 47
1.10b	ENST00000260118	10b	ENSE00002133142	chr8:63928012-63927644	369	GGH_HUMAN	279-318	40	4	A:255-294 B:255-294 C:255-294 D:255-294	40 40 40 40

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:288
 aligned with GGH_HUMAN | Q92820 from UniProtKB/Swiss-Prot  Length:318

    Alignment length:288
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310        
            GGH_HUMAN    31 AKKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNNHHFKSESEEEKALIYQFSPIYTGNISSFQQCYIFD 318
               SCOP domains d1l9xa_ A: gamma-glutamyl hydrolase                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 1l9xA00 A:7-294  [code=3.40.50.880, no name defined]                                                                                                                                                                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeee.ee..hhhhhh...eeeehhhhhhhhhh..eeeee....hhhhhhhhhhhh.eeee.........hhhhhhhhhhhhhhhhhhhh.....eeeehhhhhhhhhhhhh....eeeeeeeeee..ee.............hhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhheeeeeeee....eeeeeeee....eeee....hhhhhh.........hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh..ee........eeeee. Sec.struct. author
                 SAPs(SNPs) T-----------------------------------------------------------------------------------------------------------------------I----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE PEPTIDASE_C26_GGH  PDB: - UniProt: 25-318                                                                                                                                                                                                                                                        PROSITE
           Transcript 1 (1) 1.1a   -------------------------------------Exon 1.3a         ----------------------------Exon 1.6a  PDB: A:97-143 UniProt: 121-167      -----------------------------------Exon 1.7c  PDB: A:179-209      ---------------------------------------------Exon 1.10b  PDB: A:255-294               Transcript 1 (1)
           Transcript 1 (2) ------Exon 1.2  PDB: A:13-51 UniProt: 37-75  ----------------Exon 1.5b  PDB: A:68-96      ----------------------------------------------Exon 1.7a  PDB: A:143-178           ------------------------------Exon 1.9b  PDB: A:209-255 UniProt: 233-279     --------------------------------------- Transcript 1 (2)
                 1l9x A   7 AKKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNNHHFKSESEEEKALIYQFSPIYTGNISSFQQCYIFD 294
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286

Chain B from PDB  Type:PROTEIN  Length:294
 aligned with GGH_HUMAN | Q92820 from UniProtKB/Swiss-Prot  Length:318

    Alignment length:307
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       
            GGH_HUMAN    12 GLLLCGAASLELSRPHGDTAKKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNNHHFKSESEEEKALIYQFSPIYTGNISSFQQCYIFD 318
               SCOP domains d1l9xb             _ B: gamma-glutamyl hydrolase                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains 1l9xB0             0 B:-8-294  [code=3.40.50.880, no name defined]                                                                                                                                                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......-------------....eeeee.ee....hhhhh..eeeehhhhhhhhhh..eeeee....hhhhhhhhhhhh.eeee.........hhhhhhhhhhhhhhhhhhhh.....eeeehhhhhhhhhhhhh....eeeeeeeeee..ee.............hhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhheeeeeeee....eeeeeeee....eeee....hhhhhh.........hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh..ee........eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------T-----------------------------------------------------------------------------------------------------------------------I----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------PEPTIDASE_C26_GGH  PDB: B:7-294 UniProt: 25-318                                                                                                                                                                                                                                                        PROSITE
           Transcript 1 (1) Exon 1.1a UniProt: 1-37   -------------------------------------Exon 1.3a         ----------------------------Exon 1.6a  PDB: B:97-143 UniProt: 121-167      -----------------------------------Exon 1.7c  PDB: B:179-209      ---------------------------------------------Exon 1.10b  PDB: B:255-294               Transcript 1 (1)
           Transcript 1 (2) -------------------------Exon 1.2  PDB: B:13-51 UniProt: 37-75  ----------------Exon 1.5b  PDB: B:68-96      ----------------------------------------------Exon 1.7a  PDB: B:143-178           ------------------------------Exon 1.9b  PDB: B:209-255 UniProt: 233-279     --------------------------------------- Transcript 1 (2)
                 1l9x B  -8 GLVPRG-------------AKKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNNHHFKSESEEEKALIYQFSPIYTGNISSFQQCYIFD 294
                                 |   -         7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       
                                -3             7

Chain C from PDB  Type:PROTEIN  Length:288
 aligned with GGH_HUMAN | Q92820 from UniProtKB/Swiss-Prot  Length:318

    Alignment length:288
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310        
            GGH_HUMAN    31 AKKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNNHHFKSESEEEKALIYQFSPIYTGNISSFQQCYIFD 318
               SCOP domains d1l9xc_ C: gamma-glutamyl hydrolase                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 1l9xC00 C:7-294  [code=3.40.50.880, no name defined]                                                                                                                                                                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeee.ee..hhhhhhhh.eeeehhhhhhhhhh..eeeee....hhhhhhhhhhhh.eeee.........hhhhhhhhhhhhhhhhhhhh.....eeeehhhhhhhhhhhhh....eeeeeeeeee..ee.............hhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhheeeeeeee....eeeeeeee....eeee....hhhhhh.........hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh..ee........eeeee. Sec.struct. author
                 SAPs(SNPs) T-----------------------------------------------------------------------------------------------------------------------I----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE PEPTIDASE_C26_GGH  PDB: - UniProt: 25-318                                                                                                                                                                                                                                                        PROSITE
           Transcript 1 (1) 1.1a   -------------------------------------Exon 1.3a         ----------------------------Exon 1.6a  PDB: C:97-143 UniProt: 121-167      -----------------------------------Exon 1.7c  PDB: C:179-209      ---------------------------------------------Exon 1.10b  PDB: C:255-294               Transcript 1 (1)
           Transcript 1 (2) ------Exon 1.2  PDB: C:13-51 UniProt: 37-75  ----------------Exon 1.5b  PDB: C:68-96      ----------------------------------------------Exon 1.7a  PDB: C:143-178           ------------------------------Exon 1.9b  PDB: C:209-255 UniProt: 233-279     --------------------------------------- Transcript 1 (2)
                 1l9x C   7 AKKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNNHHFKSESEEEKALIYQFSPIYTGNISSFQQCYIFD 294
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286

Chain D from PDB  Type:PROTEIN  Length:293
 aligned with GGH_HUMAN | Q92820 from UniProtKB/Swiss-Prot  Length:318

    Alignment length:307
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       
            GGH_HUMAN    12 GLLLCGAASLELSRPHGDTAKKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNNHHFKSESEEEKALIYQFSPIYTGNISSFQQCYIFD 318
               SCOP domains d1l9x              d_ D: gamma-glutamyl hydrolase                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1l9xD              00 D:-8-294  [code=3.40.50.880, no name defined]                                                                                                                                                                                                                                                 CATH domains
           Pfam domains (1) ----------------------Peptidase_C26-1l9xD01 D:10-222                                                                                                                                                                                       ------------------------------------------------------------------------ Pfam domains (1)
           Pfam domains (2) ----------------------Peptidase_C26-1l9xD02 D:10-222                                                                                                                                                                                       ------------------------------------------------------------------------ Pfam domains (2)
           Pfam domains (3) ----------------------Peptidase_C26-1l9xD03 D:10-222                                                                                                                                                                                       ------------------------------------------------------------------------ Pfam domains (3)
           Pfam domains (4) ----------------------Peptidase_C26-1l9xD04 D:10-222                                                                                                                                                                                       ------------------------------------------------------------------------ Pfam domains (4)
         Sec.struct. author .....--------------....eeeee.ee..hhhhhhhh.eeeehhhhhhhhhh..eeeee....hhhhhhhhhhhh.eeee.........hhhhhhhhhhhhhhhhhhhh.....eeeehhhhhhhhhhhhh....eeeeeeeeee..ee.............hhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhheeeeeeee....eeeeeeee....eeee....hhhhhh.........hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh..ee........eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------T-----------------------------------------------------------------------------------------------------------------------I----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------PEPTIDASE_C26_GGH  PDB: D:7-294 UniProt: 25-318                                                                                                                                                                                                                                                        PROSITE
           Transcript 1 (1) Exon 1.1a UniProt: 1-37   -------------------------------------Exon 1.3a         ----------------------------Exon 1.6a  PDB: D:97-143 UniProt: 121-167      -----------------------------------Exon 1.7c  PDB: D:179-209      ---------------------------------------------Exon 1.10b  PDB: D:255-294               Transcript 1 (1)
           Transcript 1 (2) -------------------------Exon 1.2  PDB: D:13-51 UniProt: 37-75  ----------------Exon 1.5b  PDB: D:68-96      ----------------------------------------------Exon 1.7a  PDB: D:143-178           ------------------------------Exon 1.9b  PDB: D:209-255 UniProt: 233-279     --------------------------------------- Transcript 1 (2)
                 1l9x D  -8 GLVPR--------------AKKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNNHHFKSESEEEKALIYQFSPIYTGNISSFQQCYIFD 294
                                |    -         7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       
                               -4              7

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Flavodoxin-like (1057)

Superfamily: Class I glutamine amidotransferase-like (173)

Family: Class I glutamine amidotransferases (GAT) (48)

Protein domain: gamma-glutamyl hydrolase (1)

Human (Homo sapiens) [TaxId: 9606] (1)

1a	d1l9xa_	A:
1b	d1l9xb_	B:
1c	d1l9xc_	C:
1d	d1l9xd_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.880, no name defined] (97)

Human (Homo sapiens) (27)

1a	1l9xA00	A:7-294
1b	1l9xC00	C:7-294
1c	1l9xD00	D:-8-294
1d	1l9xB00	B:-8-294

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Glutaminase_I (73)

Family: Peptidase_C26 (1)

Homo sapiens (Human) (1)

1a	Peptidase_C26-1l9xD01	D:10-222
1b	Peptidase_C26-1l9xD02	D:10-222
1c	Peptidase_C26-1l9xD03	D:10-222
1d	Peptidase_C26-1l9xD04	D:10-222

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (GGH_HUMAN | Q92820)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0008238	exopeptidase activity	Catalysis of the hydrolysis of a peptide bond not more than three residues from the N- or C-terminus of a polypeptide chain, in a reaction that requires a free N-terminal amino group, C-terminal carboxyl group or both.
	GO:0034722	gamma-glutamyl-peptidase activity	Catalysis of the cleavage of a gamma-linked glutamate bond.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0008242	omega peptidase activity	Catalysis of the removal of terminal peptide residues that are substituted, cyclized or linked by isopeptide bonds (peptide linkages other than those of alpha-carboxyl to alpha-amino groups).
biological process
	GO:0006541	glutamine metabolic process	The chemical reactions and pathways involving glutamine, 2-amino-4-carbamoylbutanoic acid.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
	GO:0042493	response to drug	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
	GO:0045471	response to ethanol	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus.
	GO:0032868	response to insulin	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms.
	GO:0010043	response to zinc ion	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus.
	GO:0046900	tetrahydrofolylpolyglutamate metabolic process	The chemical reactions and pathways involving tetrahydrofolylpolyglutamate, a folate derivative comprising tetrahydrofolate attached to a chain of glutamate residues.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
	GO:0005764	lysosome	A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions.
	GO:0042470	melanosome	A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0005773	vacuole	A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol.

Asymmetric Unit
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	1l9x
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	GGH_HUMAN \| Q92820
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	3.4.19.9
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(no "Entries Sharing at Least One Protein Chain" available for 1L9X)

(no "Related Entries Specified in the PDB File" available for 1L9X)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (2, 8)

PROSITE Motifs (1, 2)

Exons (9, 36)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (1, 4)

Pfam Domains (1, 4)

Gene Ontology (20, 20)

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