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1L9X
Asym. Unit
Info
Asym.Unit (213 KB)
Biol.Unit 1 (55 KB)
Biol.Unit 2 (55 KB)
Biol.Unit 3 (55 KB)
Biol.Unit 4 (55 KB)
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(1)
Title
:
STRUCTURE OF GAMMA-GLUTAMYL HYDROLASE
Authors
:
H. Li, T. J. Ryan, K. J. Chave, P. Van Roey
Date
:
26 Mar 02 (Deposition) - 10 Apr 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Gamma-Glutamyl Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Li, T. J. Ryan, K. J. Chave, P. Van Roey
Three-Dimensional Structure Of Human Gamma -Glutamyl Hydrolase. A Class I Glatamine Amidotransferase Adapted For A Complex Substate.
J. Biol. Chem. V. 277 24522 2002
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
1b: BETA-MERCAPTOETHANOL (BMEb)
1c: BETA-MERCAPTOETHANOL (BMEc)
1d: BETA-MERCAPTOETHANOL (BMEd)
1e: BETA-MERCAPTOETHANOL (BMEe)
1f: BETA-MERCAPTOETHANOL (BMEf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BME
6
Ligand/Ion
BETA-MERCAPTOETHANOL
[
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]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:77 , LEU A:78 , ARG A:79 , CYS A:124
BINDING SITE FOR RESIDUE BME A 1001
2
AC2
SOFTWARE
GLY B:73 , GLY B:74 , CYS B:110 , LEU B:111 , PHE B:170 , HIS B:220 , HOH B:1061
BINDING SITE FOR RESIDUE BME B 1002
3
AC3
SOFTWARE
LEU B:118 , CYS B:124 , LEU B:126
BINDING SITE FOR RESIDUE BME B 1003
4
AC4
SOFTWARE
GLY C:73 , GLY C:74 , CYS C:110 , LEU C:111 , PHE C:170 , HIS C:220
BINDING SITE FOR RESIDUE BME C 1004
5
AC5
SOFTWARE
LEU C:118 , CYS C:124 , LEU C:126
BINDING SITE FOR RESIDUE BME C 1005
6
AC6
SOFTWARE
GLU D:114 , CYS D:124 , LEU D:126
BINDING SITE FOR RESIDUE BME D 1006
[
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]
SAPs(SNPs)/Variants
(2, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_029230 (A7T, chain A/B/C/D, )
2: VAR_029231 (T127I, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_029230
A
31
T
GGH_HUMAN
Polymorphism
11545077
A/B/C/D
A
7
T
2
UniProt
VAR_029231
T
151
I
GGH_HUMAN
Polymorphism
11545078
A/B/C/D
T
127
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PEPTIDASE_C26_GGH (B:7-294,D:7-294)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEPTIDASE_C26_GGH
PS51275
Gamma-glutamyl hydrolase domain profile.
GGH_HUMAN
25-318
2
B:7-294
D:7-294
[
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]
Exons
(9, 36)
Info
All Exons
Exon 1.1a (A:7-13 | B:-8-13 (gaps) | C:7-13 |...)
Exon 1.2 (A:13-51 | B:13-51 | C:13-51 | D:13...)
Exon 1.3a (A:51-68 | B:51-68 | C:51-68 | D:51...)
Exon 1.5b (A:68-96 | B:68-96 | C:68-96 | D:68...)
Exon 1.6a (A:97-143 | B:97-143 | C:97-143 | D...)
Exon 1.7a (A:143-178 | B:143-178 | C:143-178 ...)
Exon 1.7c (A:179-209 | B:179-209 | C:179-209 ...)
Exon 1.9b (A:209-255 | B:209-255 | C:209-255 ...)
Exon 1.10b (A:255-294 | B:255-294 | C:255-294 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.2
03: Boundary 1.2/1.3a
04: Boundary 1.3a/1.5b
05: Boundary 1.5b/1.6a
06: Boundary 1.6a/1.7a
07: Boundary 1.7a/1.7c
08: Boundary 1.7c/1.9b
09: Boundary 1.9b/1.10b
10: Boundary 1.10b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000260118
1a
ENSE00001319126
chr8:
63951730-63951219
512
GGH_HUMAN
1-37
37
4
A:7-13
B:-8-13 (gaps)
C:7-13
D:-8-13 (gaps)
7
26
7
26
1.2
ENST00000260118
2
ENSE00000928434
chr8:
63948329-63948215
115
GGH_HUMAN
37-75
39
4
A:13-51
B:13-51
C:13-51
D:13-51
39
39
39
39
1.3a
ENST00000260118
3a
ENSE00000928433
chr8:
63942776-63942726
51
GGH_HUMAN
75-92
18
4
A:51-68
B:51-68
C:51-68
D:51-68
18
18
18
18
1.5b
ENST00000260118
5b
ENSE00000928432
chr8:
63939824-63939740
85
GGH_HUMAN
92-120
29
4
A:68-96
B:68-96
C:68-96
D:68-96
29
29
29
29
1.6a
ENST00000260118
6a
ENSE00000928431
chr8:
63938855-63938717
139
GGH_HUMAN
121-167
47
4
A:97-143
B:97-143
C:97-143
D:97-143
47
47
47
47
1.7a
ENST00000260118
7a
ENSE00002148908
chr8:
63936745-63936639
107
GGH_HUMAN
167-202
36
4
A:143-178
B:143-178
C:143-178
D:143-178
36
36
36
36
1.7c
ENST00000260118
7c
ENSE00000928429
chr8:
63936556-63936466
91
GGH_HUMAN
203-233
31
4
A:179-209
B:179-209
C:179-209
D:179-209
31
31
31
31
1.9b
ENST00000260118
9b
ENSE00000928428
chr8:
63930189-63930052
138
GGH_HUMAN
233-279
47
4
A:209-255
B:209-255
C:209-255
D:209-255
47
47
47
47
1.10b
ENST00000260118
10b
ENSE00002133142
chr8:
63928012-63927644
369
GGH_HUMAN
279-318
40
4
A:255-294
B:255-294
C:255-294
D:255-294
40
40
40
40
[
close EXON info
]
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1l9xa_ (A:)
1b: SCOP_d1l9xb_ (B:)
1c: SCOP_d1l9xc_ (C:)
1d: SCOP_d1l9xd_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Class I glutamine amidotransferase-like
(173)
Family
:
Class I glutamine amidotransferases (GAT)
(48)
Protein domain
:
gamma-glutamyl hydrolase
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1l9xa_
A:
1b
d1l9xb_
B:
1c
d1l9xc_
C:
1d
d1l9xd_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1l9xA00 (A:7-294)
1b: CATH_1l9xC00 (C:7-294)
1c: CATH_1l9xD00 (D:-8-294)
1d: CATH_1l9xB00 (B:-8-294)
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(
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)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.880, no name defined]
(97)
Human (Homo sapiens)
(27)
1a
1l9xA00
A:7-294
1b
1l9xC00
C:7-294
1c
1l9xD00
D:-8-294
1d
1l9xB00
B:-8-294
[
close CATH info
]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Peptidase_C26_1l9xD01 (D:10-222)
1b: PFAM_Peptidase_C26_1l9xD02 (D:10-222)
1c: PFAM_Peptidase_C26_1l9xD03 (D:10-222)
1d: PFAM_Peptidase_C26_1l9xD04 (D:10-222)
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Clans
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Organisms
(
)
(
)
Clan
:
Glutaminase_I
(73)
Family
:
Peptidase_C26
(1)
Homo sapiens (Human)
(1)
1a
Peptidase_C26-1l9xD01
D:10-222
1b
Peptidase_C26-1l9xD02
D:10-222
1c
Peptidase_C26-1l9xD03
D:10-222
1d
Peptidase_C26-1l9xD04
D:10-222
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