1L9H - JenaLib

Asymmetric Unit (42, 42)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	NAG A:504 , LYS B:16	BINDING SITE FOR RESIDUE MAN A 503
02	AC2	SOFTWARE	MAN A:503 , NAG A:505 , LYS B:16	BINDING SITE FOR RESIDUE NAG A 504
03	AC3	SOFTWARE	THR A:4 , ASN A:15 , GLY A:18 , VAL A:20 , NAG A:504 , NAG B:605	BINDING SITE FOR RESIDUE NAG A 505
04	AC4	SOFTWARE	MAN B:603	BINDING SITE FOR RESIDUE MAN B 602
05	AC5	SOFTWARE	LYS A:16 , MAN B:602 , NAG B:604	BINDING SITE FOR RESIDUE MAN B 603
06	AC6	SOFTWARE	LYS A:16 , THR A:17 , MAN B:603 , NAG B:605	BINDING SITE FOR RESIDUE NAG B 604
07	AC7	SOFTWARE	NAG A:505 , THR B:4 , ASN B:15 , GLY B:18 , VAL B:20 , NAG B:604	BINDING SITE FOR RESIDUE NAG B 605
08	AC8	SOFTWARE	NAG A:705 , GLU B:197	BINDING SITE FOR RESIDUE NAG A 704
09	AC9	SOFTWARE	ASN A:2 , GLY A:280 , SER A:281 , ASP A:282 , NAG A:704 , HOH A:2002 , GLU B:197	BINDING SITE FOR RESIDUE NAG A 705
10	BC1	SOFTWARE	NAG B:805	BINDING SITE FOR RESIDUE NAG B 804
11	BC2	SOFTWARE	PRO A:7 , ZN A:2011 , ASN B:2 , GLY B:280 , SER B:281 , ASP B:282 , NAG B:804	BINDING SITE FOR RESIDUE NAG B 805
12	BC3	SOFTWARE	ALA A:234 , ALA A:235 , ARG A:252 , ILE A:305 , MET A:308 , TRP B:35 , SER B:38 , MET B:39 , LEU B:99	BINDING SITE FOR RESIDUE BNG A 1500
13	BC4	SOFTWARE	ALA A:233 , ARG A:252 , ILE A:256 , BNG B:1502	BINDING SITE FOR RESIDUE BNG A 1501
14	BC5	SOFTWARE	BNG A:1501 , GLU B:33 , TRP B:35	BINDING SITE FOR RESIDUE BNG B 1502
15	BC6	SOFTWARE	LEU A:266 , PRO A:267 , GLY A:270 , VAL A:271 , TYR A:274 , PHE A:287	BINDING SITE FOR RESIDUE BNG A 1503
16	BC7	SOFTWARE	LYS A:66 , ARG A:69 , GLU A:150 , GLU A:247 , VAL A:345 , PRO A:347 , HTO A:1404	BINDING SITE FOR RESIDUE BNG A 1504
17	BC8	SOFTWARE	TYR A:30 , LEU A:31 , GLU A:33 , GLY A:284 , PRO A:285 , ILE A:286 , PHE A:287	BINDING SITE FOR RESIDUE BNG A 1505
18	BC9	SOFTWARE	ASP B:282 , PHE B:283 , GLY B:284 , PRO B:285 , ILE B:286 , PHE B:287	BINDING SITE FOR RESIDUE BNG B 1506
19	CC1	SOFTWARE	CYS A:264 , THR A:297	BINDING SITE FOR RESIDUE HG A 901
20	CC2	SOFTWARE	CYS B:264 , THR B:297	BINDING SITE FOR RESIDUE HG B 902
21	CC3	SOFTWARE	ALA A:132 , CYS A:222	BINDING SITE FOR RESIDUE HG A 903
22	CC4	SOFTWARE	ALA B:132 , CYS B:222 , TYR B:223	BINDING SITE FOR RESIDUE HG B 904
23	CC5	SOFTWARE	GLN A:312 , CYS A:316 , VAL A:337	BINDING SITE FOR RESIDUE HG A 905
24	CC6	SOFTWARE	HIS B:65 , LYS B:66 , LYS B:67 , CYS B:316	BINDING SITE FOR RESIDUE HG B 906
25	CC7	SOFTWARE	PRO B:7 , HIS B:195 , GLU B:197	BINDING SITE FOR RESIDUE ZN B 956
26	CC8	SOFTWARE	GLU A:201 , GLN A:279 , GLU B:196	BINDING SITE FOR RESIDUE ZN A 957
27	CC9	SOFTWARE	GLU A:196 , GLU B:201 , GLN B:279	BINDING SITE FOR RESIDUE ZN B 958
28	DC1	SOFTWARE	LYS A:311 , ARG A:314 , GLY A:329 , ASP A:330 , TYR B:96 , HIS B:100	BINDING SITE FOR RESIDUE ZN A 959
29	DC2	SOFTWARE	GLU A:122 , TRP A:126 , MET A:163 , ALA A:164 , CYS A:167 , HIS A:211	BINDING SITE FOR RESIDUE ZN A 962
30	DC3	SOFTWARE	GLU B:122 , TRP B:126 , MET B:163 , ALA B:164 , CYS B:167 , HIS B:211	BINDING SITE FOR RESIDUE ZN B 963
31	DC4	SOFTWARE	PRO A:7 , HIS A:195 , GLU A:197 , NAG B:805	BINDING SITE FOR RESIDUE ZN A 2011
32	DC5	SOFTWARE	THR A:297	BINDING SITE FOR RESIDUE HTO A 1400
33	DC6	SOFTWARE	SER A:38 , LEU A:99 , MET B:308 , ARG B:314	BINDING SITE FOR RESIDUE HTO A 1401
34	DC7	SOFTWARE	ALA A:246 , SER A:334 , THR A:335 , BNG A:1504	BINDING SITE FOR RESIDUE HTO A 1404
35	DC8	SOFTWARE	MET A:317 , LEU A:321 , LEU A:328 , PHE B:45 , ILE B:48 , THR B:92 , TYR B:96	BINDING SITE FOR RESIDUE HTO A 1405
36	DC9	SOFTWARE	TYR B:301	BINDING SITE FOR RESIDUE PLM B 1407
37	EC1	SOFTWARE	LEU A:40 , ILE A:290	BINDING SITE FOR RESIDUE PLM A 1410
38	EC2	SOFTWARE	GLU A:113 , ALA A:117 , THR A:118 , GLY A:121 , SER A:186 , CYS A:187 , ILE A:189 , MET A:207 , HIS A:211 , PHE A:212 , PHE A:261 , TRP A:265 , TYR A:268 , ALA A:269 , ALA A:292 , LYS A:296 , HOH A:2014	BINDING SITE FOR RESIDUE RET A 1296
39	EC3	SOFTWARE	PHE A:56 , CYS A:322 , PLM A:1323 , MET B:49	BINDING SITE FOR RESIDUE PLM A 1322
40	EC4	SOFTWARE	LEU A:321 , CYS A:322 , CYS A:323 , PLM A:1322 , PHE B:88	BINDING SITE FOR RESIDUE PLM A 1323
41	EC5	SOFTWARE	ALA B:117 , THR B:118 , GLY B:121 , CYS B:187 , ILE B:189 , MET B:207 , PHE B:212 , PHE B:261 , TRP B:265 , TYR B:268 , ALA B:269 , ALA B:292 , LYS B:296	BINDING SITE FOR RESIDUE RET B 1296
42	EC6	SOFTWARE	PHE A:52 , CYS B:322	BINDING SITE FOR RESIDUE PLM B 1322

SS Bonds (2, 2)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 4)

Exons (5, 10)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:341
 aligned with OPSD_BOVIN | P02699 from UniProtKB/Swiss-Prot  Length:348

    Alignment length:349
                             1                                                                                                                                                                                                                                                                                                                                                           
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339         
           OPSD_BOVIN     - -MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA 348
               SCOP domains d1l9ha_ A: Rhodopsin                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains -1l9hA00 A:1-348 Rhopdopsin 7-helix transmembrane proteins                                                                                                                                                                                                                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee....ee.....................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhh....eeee....eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhh.........-----..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........---............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------G_PROTEIN_RECEP_F------------------------------------------------------------------------------------------------------------------------------------------------------OPSIN            ------------------------------------------ PROSITE
           Transcript 1 (1) -Exon 1.1  PDB: A:1-124 UniProt: 1-124                                                                                       -------------------------------------------------------Exon 1.3  PDB: A:180-235 UniProt: 180-235               Exon 1.4  PDB: A:241-315 UniProt: 236-315 [INCOMPLETE]                          Exon 1.5  PDB: A:316-348 (gaps)   Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------------------------------------------------------------Exon 1.2  PDB: A:124-180 UniProt: 124-180                ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript 1 (2)
                 1l9h A   0 xMNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAA-----ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGD---STTVSKTETSQVAPA 348
                            |        9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229     |   - |     249       259       269       279       289       299       309       319       329|   |  339         
                            |                                                                                                                                                                                                                                        235   241                                                                                      330 334              
                            0-ACE

Chain B from PDB  Type:PROTEIN  Length:302
 aligned with OPSD_BOVIN | P02699 from UniProtKB/Swiss-Prot  Length:348

    Alignment length:327
                             1                                                                                                                                                                                                                                                                                                                                     
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       
           OPSD_BOVIN     - -MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN 326
               SCOP domains d1l9hb_ B: Rhodopsin                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains -1l9hB00 B:1-326 Rhopdopsin 7-helix transmembrane proteins                                                                                                                                                                                                                                                                              CATH domains
           Pfam domains (1) --Rhodopsin_N-1l9hB03 B:2-37          ----------------7tm_1-1l9hB01 B:54-306                                                                                                                                                                                                                                       -------------------- Pfam domains (1)
           Pfam domains (2) --Rhodopsin_N-1l9hB04 B:2-37          ----------------7tm_1-1l9hB02 B:54-306                                                                                                                                                                                                                                       -------------------- Pfam domains (2)
         Sec.struct. author ....ee....ee.....................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..--------hhhhhhhhhhhhhhhhhhhhhhhhh....eeee....eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhh-----------------.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------G_PROTEIN_RECEP_F------------------------------------------------------------------------------------------------------------------------------------------------------OPSIN            -------------------- PROSITE
           Transcript 1 (1) -Exon 1.1  PDB: B:1-124 UniProt: 1-124                                                                                       -------------------------------------------------------Exon 1.3  PDB: B:180-226 UniProt: 180-235 [INCOMPLETE]  Exon 1.4  PDB: B:244-315 UniProt: 236-315 [INCOMPLETE]                          Exon 1.5    Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------------------------------------------------------------Exon 1.2  PDB: B:124-180 (gaps) UniProt: 124-180         -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1l9h B   0 xMNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVC--------GENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL-----------------QKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN 326
                            |        9        19        29        39        49        59        69        79        89        99       109       119       129       139|      149       159       169       179       189       199       209       219      |  -         -    |  249       259       269       279       289       299       309       319       
                            0-ACE                                                                                                                                     140      149                                                                          226               244

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (1, 2)

Pfam Domains (2, 4)

Gene Ontology (37, 37)

Asymmetric Unit(hide GO term definitions)

Chain A,B (OPSD_BOVIN | P02699)

molecular function
	GO:0008020	G-protein coupled photoreceptor activity	Combining with incidental electromagnetic radiation, particularly visible light, and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex.
	GO:0004930	G-protein coupled receptor activity	Combining with an extracellular signal and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex.
	GO:0005085	guanyl-nucleotide exchange factor activity	Stimulates the exchange of guanyl nucleotides associated with a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0009881	photoreceptor activity	The function of absorbing and responding to incidental electromagnetic radiation, particularly visible light. The response may involve a change in conformation.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0004871	signal transducer activity	Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
biological process
	GO:0007186	G-protein coupled receptor signaling pathway	A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription. The pathway can start from the plasma membrane, Golgi or nuclear membrane (PMID:24568158 and PMID:16902576).
	GO:0016038	absorption of visible light	The reception of a (visible light) photon by a cell, visible light being defined as having a wavelength within the range 380-780 nm.
	GO:0071482	cellular response to light stimulus	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
	GO:0009583	detection of light stimulus	The series of events in which a light stimulus (in the form of photons) is received and converted into a molecular signal.
	GO:0045494	photoreceptor cell maintenance	Any process preventing the degeneration of the photoreceptor, a specialized cell type that is sensitive to light.
	GO:0007602	phototransduction	The sequence of reactions within a cell required to convert absorbed photons into a molecular signal.
	GO:0007603	phototransduction, visible light	The sequence of reactions within a cell required to convert absorbed photons from visible light into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm.
	GO:0043547	positive regulation of GTPase activity	Any process that activates or increases the activity of a GTPase.
	GO:0006468	protein phosphorylation	The process of introducing a phosphate group on to a protein.
	GO:0018298	protein-chromophore linkage	The covalent or noncovalent attachment of a chromophore to a protein.
	GO:0022400	regulation of rhodopsin mediated signaling pathway	Any process that modulates the frequency, rate or extent of rhodopsin-mediated signaling.
	GO:0009416	response to light stimulus	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
	GO:0050896	response to stimulus	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
	GO:0060041	retina development in camera-type eye	The process whose specific outcome is the progression of the retina over time, from its formation to the mature structure. The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates.
	GO:0016056	rhodopsin mediated signaling pathway	The series of molecular signals generated as a consequence of excitation of rhodopsin by a photon and the events that convert the absorbed photons into a cellular response.
	GO:0050953	sensory perception of light stimulus	The series of events required for an organism to receive a sensory light stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.
	GO:0007165	signal transduction	The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
	GO:0007601	visual perception	The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image.
cellular component
	GO:0005794	Golgi apparatus	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
	GO:0000139	Golgi membrane	The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
	GO:0005911	cell-cell junction	A cell junction that forms a connection between two or more cells in a multicellular organism; excludes direct cytoplasmic junctions such as ring canals.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0005887	integral component of plasma membrane	The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0097381	photoreceptor disc membrane	Ovally-shaped membranous stack located inside the photoreceptor outer segment, and containing densely packed molecules of the photoreceptor protein rhodopsin that traverse the lipid bilayer. Disc membranes are apparently derived from the plasma membrane in the region of the cilium that connects the photoreceptor outer segment to the inner segment.
	GO:0001917	photoreceptor inner segment	The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs.
	GO:0060342	photoreceptor inner segment membrane	The membrane surrounding the inner segment of a vertebrate photoreceptor. The photoreceptor inner segment contains mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs.
	GO:0001750	photoreceptor outer segment	The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes.
	GO:0042622	photoreceptor outer segment membrane	The membrane surrounding the outer segment of a vertebrate photoreceptor.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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	Cis Peptide Bonds
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Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]
		Biological Unit 4	[ Jena3D ]

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (9, 44)

Sites (42, 42)

SS Bonds (2, 2)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 4)

Exons (5, 10)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (1, 2)

Pfam Domains (2, 4)

Gene Ontology (37, 37)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File