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Title :  HEXAMER OF DNA-PACKAGING RNA (PRNA) OF BACTERIOPHAGE PHI29 DNA-TRANSLOCATING MOTOR
 
Authors :  S. Hoeprich, P. Guo
Date :  05 Mar 02  (Deposition) - 11 Dec 02  (Release) - 05 Apr 05  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A,B,C,D,E,F
Keywords :  Symetry, Six Subunit, Prna, Hexamer, Rna, Structure, 3D, Tertiary, Motor, Phi29, Bacteriophages, Dna Package, Virus Assembly, Rna Domains, Loop/Loop Interaction, Chemical Modification, Crosslink, Photoaffinity, Rotation, Atp, Rna/Rna Interaction, Hand-In-Hand Interaction (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Hoeprich, P. Guo
Computer Modeling Of Three-Dimensional Structure Of Dna-Packaging Rna (Prna) Monomer, Dimer, And Hexamer Of Phi29 Dna Packaging Motor
J. Biol. Chem. V. 277 20794 2002
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA-PACKAGING RNA
    Chains: A, B, C, D, E, F
    Organism Common: VIRUS
    Organism Scientific: BACTERIOPHAGE PHI-29
    Synonym: PRNA

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1L4O)

(-) Sites  (0, 0)

(no "Site" information available for 1L4O)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1L4O)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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Chain A from PDB  Type:RNA  Length:117
                                                                                                                                                     
                 1l4o A   1 UCAAUGGUACGGUACUUCCAUUGUCAUGUGUAUGUUGGGGAUUAAACCCUGAUUGAGUUCAGCCCACAUACUUUGUUGAUUGGUUGUCAAUCAUGGCAAAAGUGCACGCUACUUUGA 117
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Chain B from PDB  Type:RNA  Length:117
                                                                                                                                                     
                 1l4o B   1 UCAAUGGUACGGUACUUCCAUUGUCAUGUGUAUGUUGGGGAUUAAACCCUGAUUGAGUUCAGCCCACAUACUUUGUUGAUUGGUUGUCAAUCAUGGCAAAAGUGCACGCUACUUUGA 117
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Chain C from PDB  Type:RNA  Length:117
                                                                                                                                                     
                 1l4o C   1 UCAAUGGUACGGUACUUCCAUUGUCAUGUGUAUGUUGGGGAUUAAACCCUGAUUGAGUUCAGCCCACAUACUUUGUUGAUUGGUUGUCAAUCAUGGCAAAAGUGCACGCUACUUUGA 117
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Chain D from PDB  Type:RNA  Length:117
                                                                                                                                                     
                 1l4o D   1 UCAAUGGUACGGUACUUCCAUUGUCAUGUGUAUGUUGGGGAUUAAACCCUGAUUGAGUUCAGCCCACAUACUUUGUUGAUUGGUUGUCAAUCAUGGCAAAAGUGCACGCUACUUUGA 117
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Chain E from PDB  Type:RNA  Length:117
                                                                                                                                                     
                 1l4o E   1 UCAAUGGUACGGUACUUCCAUUGUCAUGUGUAUGUUGGGGAUUAAACCCUGAUUGAGUUCAGCCCACAUACUUUGUUGAUUGGUUGUCAAUCAUGGCAAAAGUGCACGCUACUUUGA 117
                                    10        20        30        40        50        60        70        80        90       100       110       


Chain F from PDB  Type:RNA  Length:117
                                                                                                                                                     
                 1l4o F   1 UCAAUGGUACGGUACUUCCAUUGUCAUGUGUAUGUUGGGGAUUAAACCCUGAUUGAGUUCAGCCCACAUACUUUGUUGAUUGGUUGUCAAUCAUGGCAAAAGUGCACGCUACUUUGA 117
                                    10        20        30        40        50        60        70        80        90       100       110
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

1l4p 1L4P IS THE PHI29 PRNA HEXAMER DOCKED WITH THE CONNECTOR
1l4q 1L4Q IS THE PHI29 PRNA DIMER
1l4r 1L4R IS THE PHI29 PRNA MONOMER