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Sequence, Chains, Asymmetric and Biological Units

Title HEXAMER OF DNA-PACKAGING RNA (PRNA) OF BACTERIOPHAGE PHI29 DNA-TRANSLOCATING MOTOR
Keywords SYMETRY, SIX SUBUNIT, PRNA, HEXAMER, RNA, STRUCTURE, 3D, TERTIARY, MOTOR, PHI29, BACTERIOPHAGES, DNA PACKAGE, VIRUS ASSEMBLY, RNA DOMAINS, LOOP/LOOP INTERACTION, CHEMICAL MODIFICATION, CROSSLINK, PHOTOAFFINITY, ROTATION, ATP, RNA/RNA INTERACTION, HAND-IN-HAND INTERACTION
Experiment theoretical model
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1L4O     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 117 2477 0
2  RNA    B 117 2477 0
3  RNA    C 117 2477 0
4  RNA    D 117 2477 0
5  RNA    E 117 2477 0
6  RNA    F 117 2477 0
total       702 14862 0

Nucleic acids
Unit 1 U1 C2 A3 A4 U5 G6 G7 U8 A9 C10 G11 G12 U13 A14 C15 U16 U17 C18 C19 A20 U21 U22 G23 U24 C25 A26 U27 G28 U29 G30 U31 A32 U33 G34 U35 U36 G37 G38 G39 G40 A41 U42 U43 A44 A45 A46 C47 C48 C49 U50 G51 A52 U53 U54 G55 A56 G57 U58 U59 C60 A61 G62 C63 C64 C65 A66 C67 A68 U69 A70 C71 U72 U73 U74 G75 U76 U77 G78 A79 U80 U81 G82 G83 U84 U85 G86 U87 C88 A89 A90 U91 C92 A93 U94 G95 G96 C97 A98 A99 A100 A101 G102 U103 G104 C105 A106 C107 G108 C109 U110 A111 C112 U113 U114 U115 G116 A117
Unit 2 U1 C2 A3 A4 U5 G6 G7 U8 A9 C10 G11 G12 U13 A14 C15 U16 U17 C18 C19 A20 U21 U22 G23 U24 C25 A26 U27 G28 U29 G30 U31 A32 U33 G34 U35 U36 G37 G38 G39 G40 A41 U42 U43 A44 A45 A46 C47 C48 C49 U50 G51 A52 U53 U54 G55 A56 G57 U58 U59 C60 A61 G62 C63 C64 C65 A66 C67 A68 U69 A70 C71 U72 U73 U74 G75 U76 U77 G78 A79 U80 U81 G82 G83 U84 U85 G86 U87 C88 A89 A90 U91 C92 A93 U94 G95 G96 C97 A98 A99 A100 A101 G102 U103 G104 C105 A106 C107 G108 C109 U110 A111 C112 U113 U114 U115 G116 A117
Unit 3 U1 C2 A3 A4 U5 G6 G7 U8 A9 C10 G11 G12 U13 A14 C15 U16 U17 C18 C19 A20 U21 U22 G23 U24 C25 A26 U27 G28 U29 G30 U31 A32 U33 G34 U35 U36 G37 G38 G39 G40 A41 U42 U43 A44 A45 A46 C47 C48 C49 U50 G51 A52 U53 U54 G55 A56 G57 U58 U59 C60 A61 G62 C63 C64 C65 A66 C67 A68 U69 A70 C71 U72 U73 U74 G75 U76 U77 G78 A79 U80 U81 G82 G83 U84 U85 G86 U87 C88 A89 A90 U91 C92 A93 U94 G95 G96 C97 A98 A99 A100 A101 G102 U103 G104 C105 A106 C107 G108 C109 U110 A111 C112 U113 U114 U115 G116 A117
Unit 4 U1 C2 A3 A4 U5 G6 G7 U8 A9 C10 G11 G12 U13 A14 C15 U16 U17 C18 C19 A20 U21 U22 G23 U24 C25 A26 U27 G28 U29 G30 U31 A32 U33 G34 U35 U36 G37 G38 G39 G40 A41 U42 U43 A44 A45 A46 C47 C48 C49 U50 G51 A52 U53 U54 G55 A56 G57 U58 U59 C60 A61 G62 C63 C64 C65 A66 C67 A68 U69 A70 C71 U72 U73 U74 G75 U76 U77 G78 A79 U80 U81 G82 G83 U84 U85 G86 U87 C88 A89 A90 U91 C92 A93 U94 G95 G96 C97 A98 A99 A100 A101 G102 U103 G104 C105 A106 C107 G108 C109 U110 A111 C112 U113 U114 U115 G116 A117
Unit 5 U1 C2 A3 A4 U5 G6 G7 U8 A9 C10 G11 G12 U13 A14 C15 U16 U17 C18 C19 A20 U21 U22 G23 U24 C25 A26 U27 G28 U29 G30 U31 A32 U33 G34 U35 U36 G37 G38 G39 G40 A41 U42 U43 A44 A45 A46 C47 C48 C49 U50 G51 A52 U53 U54 G55 A56 G57 U58 U59 C60 A61 G62 C63 C64 C65 A66 C67 A68 U69 A70 C71 U72 U73 U74 G75 U76 U77 G78 A79 U80 U81 G82 G83 U84 U85 G86 U87 C88 A89 A90 U91 C92 A93 U94 G95 G96 C97 A98 A99 A100 A101 G102 U103 G104 C105 A106 C107 G108 C109 U110 A111 C112 U113 U114 U115 G116 A117
Unit 6 U1 C2 A3 A4 U5 G6 G7 U8 A9 C10 G11 G12 U13 A14 C15 U16 U17 C18 C19 A20 U21 U22 G23 U24 C25 A26 U27 G28 U29 G30 U31 A32 U33 G34 U35 U36 G37 G38 G39 G40 A41 U42 U43 A44 A45 A46 C47 C48 C49 U50 G51 A52 U53 U54 G55 A56 G57 U58 U59 C60 A61 G62 C63 C64 C65 A66 C67 A68 U69 A70 C71 U72 U73 U74 G75 U76 U77 G78 A79 U80 U81 G82 G83 U84 U85 G86 U87 C88 A89 A90 U91 C92 A93 U94 G95 G96 C97 A98 A99 A100 A101 G102 U103 G104 C105 A106 C107 G108 C109 U110 A111 C112 U113 U114 U115 G116 A117

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany