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(-) Description

Title :  THEORETICAL MODEL OF LEISHMANIA DONOVANI TOPOISOMERASE I IN COMPLEX WITH A 22 BASE PAIR DNA DUPLEX
 
Authors :  A. Das, C. Mandal, A. Dasgupta, T. Sengupta, H. K. Majumder
Date :  28 Aug 01  (Deposition) - 12 Sep 01  (Release) - 06 Feb 02  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A,B,C
Keywords :  Complex (Isomerase/Dna), Dna, Topoisomerase I, Leishmania Donovani (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Das, C. Mandal, A. Dasgupta, T. Sengupta, H. K. Majumder
An Insight Into The Active Site Of A Type I Dna Topoisomerase From The Kinetoplastid Protozoan Leishmania Donovani.
Nucleic Acids Res. V. 30 794 2002
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TOPOISOMERASE I
    Chains: A
    Organism Common: LEISHMANIA
    Organism Scientific: LEISHMANIA DONOVANI
 
Molecule 2 - 5'- D(*AP*AP*AP*AP*AP*GP*AP*CP*TP*TP*AP*GP*AP*AP*AP*AP*AP*TP*TP *TP*TP*T)-3'
    Chains: B
 
Molecule 3 - 5'- D(*AP*AP*AP*AP*AP*TP*TP*TP*TP*TP*CP*TP*AP*AP*GP*TP*CP*TP*TP *TP*TP*T)-3'
    Chains: C

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1JUW)

(-) Sites  (0, 0)

(no "Site" information available for 1JUW)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1JUW)

(-) Cis Peptide Bonds  (3, 3)

Theoretical Model
No.Residues
1Asn A:300 -Ile A:301
2Val A:414 -Ser A:415
3Gln A:424 -Leu A:425

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1JUW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1JUW)

(-) Exons   (0, 0)

(no "Exon" information available for 1JUW)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:555
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee................eee..eee..hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...hhhhhh...hhh.eehhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh....eeee..eeee.........ee............ee...hhhh.eee.................eee........eeee......eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh....................hhh.ee......eeeee.......eeeee..hhhhhhhhhhhh.............hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhh......hhhhhh..........hhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1juw A   1 RRWETLAHNGVLFPPEYEPHGIPIFYDGREFKMTPEEEEVATMFAVMKEHDYYRMEVFRRNFFESWREILDKRQHPIRRLELCDFEPIYQWHLVQREKKLSRTKEEKKAIKEKQDAEAEPYRYCVWDGRREQVANFRVEPPGLFRGRGKHPLMGKLKVRVQPEDITINIGETAEVPVPPAGHKWAAVQHDHTVTWLAMWRDSVAGNMKYVMLAPSSSVKGQSDMVKFEKARKLKDKVDDIRASYMEDFKSNDLHVAQRAVAMYFIDRLALRVGNEKGEDEADTVGCCSLRVEHIQLMPDNIVRFDFLGKDSIRYQNDVAVLPEVYALLQRFTRRKSPGMDIFDQLNPTQLNDHLKSFMDGLSAKVFRTYNASITLDRWFKEKPVDPKWSTADKLAYFNKANTEVAILCNHQKSVSKNFKLQMMQLTTKSEYTRKTIELLEKAEVTAKKKSVEEAAKEFLEEQDRMQREWLESYGTEEQKKEFEEIVAKRAAPRVRSEKKKSTSGAKKAESASGKKRAAKKKKSAVPVVSMAAKTKKTAGVKRQRANKVVSDDDDV 555
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550     


Chain B from PDB  Type:DNA  Length:22
                                                      
                 1juw B   1 AAAAAGACTTAGAAAAATTTTT  22
                                    10        20  


Chain C from PDB  Type:DNA  Length:22
                                                      
                 1juw C 101 AAAAATTTTTCTAAGTCTTTTT 122
                                   110       120
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1JUW)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Theoretical Model(hide GO term definitions)
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  Cis Peptide Bonds
    Asn A:300 - Ile A:301   [ RasMol ]  
    Gln A:424 - Leu A:425   [ RasMol ]  
    Val A:414 - Ser A:415   [ RasMol ]  
 

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