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Sequence, Chains, Asymmetric and Biological Units

Title THEORETICAL MODEL OF LEISHMANIA DONOVANI TOPOISOMERASE I IN COMPLEX WITH A 22 BASE PAIR DNA DUPLEX
Keywords COMPLEX (ISOMERASE/DNA), DNA, TOPOISOMERASE I, LEISHMANIA DONOVANI
Experiment theoretical model
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1JUW     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   TOPOISOMERASE I  A 555 4538 0
2  DNA    B 22 452 0
3  DNA    C 22 444 0
total       599 5434 0

Proteins
Unit 1 ARG1 ARG2 TRP3 GLU4 THR5 LEU6 ALA7 HIS8 ASN9 GLY10 VAL11 LEU12 PHE13 PRO14 PRO15 GLU16 TYR17 GLU18 PRO19 HIS20 GLY21 ILE22 PRO23 ILE24 PHE25 TYR26 ASP27 GLY28 ARG29 GLU30 PHE31 LYS32 MET33 THR34 PRO35 GLU36 GLU37 GLU38 GLU39 VAL40 ALA41 THR42 MET43 PHE44 ALA45 VAL46 MET47 LYS48 GLU49 HIS50 ASP51 TYR52 TYR53 ARG54 MET55 GLU56 VAL57 PHE58 ARG59 ARG60 ASN61 PHE62 PHE63 GLU64 SER65 TRP66 ARG67 GLU68 ILE69 LEU70 ASP71 LYS72 ARG73 GLN74 HIS75 PRO76 ILE77 ARG78 ARG79 LEU80 GLU81 LEU82 CYS83 ASP84 PHE85 GLU86 PRO87 ILE88 TYR89 GLN90 TRP91 HIS92 LEU93 VAL94 GLN95 ARG96 GLU97 LYS98 LYS99 LEU100 SER101 ARG102 THR103 LYS104 GLU105 GLU106 LYS107 LYS108 ALA109 ILE110 LYS111 GLU112 LYS113 GLN114 ASP115 ALA116 GLU117 ALA118 GLU119 PRO120 TYR121 ARG122 TYR123 CYS124 VAL125 TRP126 ASP127 GLY128 ARG129 ARG130 GLU131 GLN132 VAL133 ALA134 ASN135 PHE136 ARG137 VAL138 GLU139 PRO140 PRO141 GLY142 LEU143 PHE144 ARG145 GLY146 ARG147 GLY148 LYS149 HIS150 PRO151 LEU152 MET153 GLY154 LYS155 LEU156 LYS157 VAL158 ARG159 VAL160 GLN161 PRO162 GLU163 ASP164 ILE165 THR166 ILE167 ASN168 ILE169 GLY170 GLU171 THR172 ALA173 GLU174 VAL175 PRO176 VAL177 PRO178 PRO179 ALA180 GLY181 HIS182 LYS183 TRP184 ALA185 ALA186 VAL187 GLN188 HIS189 ASP190 HIS191 THR192 VAL193 THR194 TRP195 LEU196 ALA197 MET198 TRP199 ARG200 ASP201 SER202 VAL203 ALA204 GLY205 ASN206 MET207 LYS208 TYR209 VAL210 MET211 LEU212 ALA213 PRO214 SER215 SER216 SER217 VAL218 LYS219 GLY220 GLN221 SER222 ASP223 MET224 VAL225 LYS226 PHE227 GLU228 LYS229 ALA230 ARG231 LYS232 LEU233 LYS234 ASP235 LYS236 VAL237 ASP238 ASP239 ILE240 ARG241 ALA242 SER243 TYR244 MET245 GLU246 ASP247 PHE248 LYS249 SER250 ASN251 ASP252 LEU253 HIS254 VAL255 ALA256 GLN257 ARG258 ALA259 VAL260 ALA261 MET262 TYR263 PHE264 ILE265 ASP266 ARG267 LEU268 ALA269 LEU270 ARG271 VAL272 GLY273 ASN274 GLU275 LYS276 GLY277 GLU278 ASP279 GLU280 ALA281 ASP282 THR283 VAL284 GLY285 CYS286 CYS287 SER288 LEU289 ARG290 VAL291 GLU292 HIS293 ILE294 GLN295 LEU296 MET297 PRO298 ASP299 ASN300 ILE301 VAL302 ARG303 PHE304 ASP305 PHE306 LEU307 GLY308 LYS309 ASP310 SER311 ILE312 ARG313 TYR314 GLN315 ASN316 ASP317 VAL318 ALA319 VAL320 LEU321 PRO322 GLU323 VAL324 TYR325 ALA326 LEU327 LEU328 GLN329 ARG330 PHE331 THR332 ARG333 ARG334 LYS335 SER336 PRO337 GLY338 MET339 ASP340 ILE341 PHE342 ASP343 GLN344 LEU345 ASN346 PRO347 THR348 GLN349 LEU350 ASN351 ASP352 HIS353 LEU354 LYS355 SER356 PHE357 MET358 ASP359 GLY360 LEU361 SER362 ALA363 LYS364 VAL365 PHE366 ARG367 THR368 TYR369 ASN370 ALA371 SER372 ILE373 THR374 LEU375 ASP376 ARG377 TRP378 PHE379 LYS380 GLU381 LYS382 PRO383 VAL384 ASP385 PRO386 LYS387 TRP388 SER389 THR390 ALA391 ASP392 LYS393 LEU394 ALA395 TYR396 PHE397 ASN398 LYS399 ALA400 ASN401 THR402 GLU403 VAL404 ALA405 ILE406 LEU407 CYS408 ASN409 HIS410 GLN411 LYS412 SER413 VAL414 SER415 LYS416 ASN417 PHE418 LYS419 LEU420 GLN421 MET422 MET423 GLN424 LEU425 THR426 THR427 LYS428 SER429 GLU430 TYR431 THR432 ARG433 LYS434 THR435 ILE436 GLU437 LEU438 LEU439 GLU440 LYS441 ALA442 GLU443 VAL444 THR445 ALA446 LYS447 LYS448 LYS449 SER450 VAL451 GLU452 GLU453 ALA454 ALA455 LYS456 GLU457 PHE458 LEU459 GLU460 GLU461 GLN462 ASP463 ARG464 MET465 GLN466 ARG467 GLU468 TRP469 LEU470 GLU471 SER472 TYR473 GLY474 THR475 GLU476 GLU477 GLN478 LYS479 LYS480 GLU481 PHE482 GLU483 GLU484 ILE485 VAL486 ALA487 LYS488 ARG489 ALA490 ALA491 PRO492 ARG493 VAL494 ARG495 SER496 GLU497 LYS498 LYS499 LYS500 SER501 THR502 SER503 GLY504 ALA505 LYS506 LYS507 ALA508 GLU509 SER510 ALA511 SER512 GLY513 LYS514 LYS515 ARG516 ALA517 ALA518 LYS519 LYS520 LYS521 LYS522 SER523 ALA524 VAL525 PRO526 VAL527 VAL528 SER529 MET530 ALA531 ALA532 LYS533 THR534 LYS535 LYS536 THR537 ALA538 GLY539 VAL540 LYS541 ARG542 GLN543 ARG544 ALA545 ASN546 LYS547 VAL548 VAL549 SER550 ASP551 ASP552 ASP553 ASP554 VAL555

Nucleic acids
Unit 2 A1 A2 A3 A4 A5 G6 A7 C8 T9 T10 A11 G12 A13 A14 A15 A16 A17 T18 T19 T20 T21 T22
Unit 3 A101 A102 A103 A104 A105 T106 T107 T108 T109 T110 C111 T112 A113 A114 G115 T116 C117 T118 T119 T120 T121 T122

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany