1JNH - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF FAB-ESTRADIOL COMPLEXES

Authors :   C. Monnet, F. Bettsworth, E. A. Stura, M. -H. Le Du, R. Menez, L. Derrien Justin, B. Gilquin, G. Sibai, N. Battail-Poirot, M. Jolivet, A. Menez M. Arnaud, F. Ducancel, J. B. Charbonnier

Date :   24 Jul 01 (Deposition) - 06 Feb 02 (Release) - 28 Jun 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.85

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: E,F  (1x)
Biol. Unit 4: G,H  (1x)

Keywords :   Igg Fold, Antibody-Hapten Complex, Estradiol, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Monnet, F. Bettsworth, E. A. Stura, M. H. Du, R. Menez, L. Derrien, S. Zinn-Justin, B. Gilquin, G. Sibai, N. Battail-Poirot, M. Jolivet, A. Menez, M. Arnaud, F. Ducancel, J. B. Charbonnier
Highly Specific Anti-Estradiol Antibodies: Structural Characterisation And Binding Diversity.
J. Mol. Biol. V. 315 699 2002
PubMed-ID: 11812141 | Reference-DOI: 10.1006/JMBI.2001.5284

Molecule 1 - MONOCLONAL ANTI-ESTRADIOL 10G6D6 FAB LIGHT CHAIN
	Chains	:	A, C, E, G
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Other Details	:	ASCETIC FLUID
	Synonym	:	FAB 10G6 LIGHT CHAIN

Molecule 2 - MONOCLONAL ANTI-ESTRADIOL 10G6D6 FAB HEAVY CHAIN
	Chains	:	B, D, F, H
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Other Details	:	ASCETIC FLUID
	Synonym	:	FAB 10G6 HEAVY CHAIN

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:					E	F
Biological Unit 4 (1x)	:							G	H

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 4)

No.	Name	Count	Type	Full Name
1	ECO	4	Ligand/Ion	ESTRADIOL-6 CARBOXYL-METHYL-OXIME

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	ECO	1	Ligand/Ion	ESTRADIOL-6 CARBOXYL-METHYL-OXIME

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	ECO	1	Ligand/Ion	ESTRADIOL-6 CARBOXYL-METHYL-OXIME

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	ECO	1	Ligand/Ion	ESTRADIOL-6 CARBOXYL-METHYL-OXIME

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	ECO	1	Ligand/Ion	ESTRADIOL-6 CARBOXYL-METHYL-OXIME

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TRP A:93 , ASN A:96 , TRP B:33 , GLN B:35 , ALA B:50 , ARG B:59 , SER B:101 , LEU B:102 , THR B:105 , ASP F:55 , ASP F:56 , ARG F:74	BINDING SITE FOR RESIDUE ECO B 351
2	AC2	SOFTWARE	ASN C:96 , TRP D:33 , GLN D:35 , ALA D:50 , ARG D:59 , GLY D:99 , SER D:101 , LEU D:102 , THR D:105	BINDING SITE FOR RESIDUE ECO D 352
3	AC3	SOFTWARE	TRP E:93 , ASN E:96 , TRP F:33 , GLN F:35 , ALA F:50 , ARG F:59 , GLY F:99 , SER F:101 , LEU F:102 , THR F:105	BINDING SITE FOR RESIDUE ECO F 353
4	AC4	SOFTWARE	ASP D:55 , ASP D:56 , ARG D:74 , ASN G:96 , TRP H:33 , GLN H:35 , ALA H:50 , ARG H:59 , GLY H:99 , SER H:101 , LEU H:102 , THR H:105	BINDING SITE FOR RESIDUE ECO H 354

Asymmetric Unit

No.	Residues
1	A:22	-	A:90
2	A:136	-	A:195
3	B:22	-	B:96
4	B:145	-	B:200
5	C:22	-	C:90
6	C:136	-	C:195
7	D:22	-	D:96
8	D:145	-	D:200
9	E:22	-	E:90
10	E:136	-	E:195
11	F:22	-	F:96
12	F:145	-	F:200
13	G:22	-	G:90
14	G:136	-	G:195
15	H:22	-	H:96
16	H:145	-	H:200

Asymmetric Unit

No.	Residues
1	Tyr A:142	-	Pro A:143
2	Phe B:151	-	Pro B:152
3	Glu B:153	-	Pro B:154
4	Trp B:193	-	Pro B:194
5	Tyr C:142	-	Pro C:143
6	Phe D:151	-	Pro D:152
7	Glu D:153	-	Pro D:154
8	Trp D:193	-	Pro D:194
9	Tyr E:142	-	Pro E:143
10	Phe F:151	-	Pro F:152
11	Glu F:153	-	Pro F:154
12	Trp F:193	-	Pro F:194
13	Tyr G:142	-	Pro G:143
14	Phe H:151	-	Pro H:152
15	Glu H:153	-	Pro H:154
16	Trp H:193	-	Pro H:194

(no "SAP(SNP)/Variant" information available for 1JNH)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	IG_MHC	PS00290	Immunoglobulins and major histocompatibility complex proteins signature.	LAC1_MOUSE	84-90	4	A:193-199 C:193-199 E:193-199 G:193-199

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	IG_MHC	PS00290	Immunoglobulins and major histocompatibility complex proteins signature.	LAC1_MOUSE	84-90	1	A:193-199 - - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	IG_MHC	PS00290	Immunoglobulins and major histocompatibility complex proteins signature.	LAC1_MOUSE	84-90	1	- C:193-199 - -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	IG_MHC	PS00290	Immunoglobulins and major histocompatibility complex proteins signature.	LAC1_MOUSE	84-90	1	- - E:193-199 -

Biological Unit 4 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	IG_MHC	PS00290	Immunoglobulins and major histocompatibility complex proteins signature.	LAC1_MOUSE	84-90	1	- - - G:193-199

(no "Exon" information available for 1JNH)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:208
 aligned with LAC1_MOUSE | P01843 from UniProtKB/Swiss-Prot  Length:105

    Alignment length:208
                                                                                     2                                                                                                                                                      
                                                                                    1|                                                  3                                                                                                   
                                     -         -         -         -         -      || -         -         -         -         -        |4        14        24        34        44        54        64        74        84        94        
           LAC1_MOUSE     - --------------------------------------------------------QP--------------------------------------------------KSSPSVTLFPPSSEELETNKATLVCTITDFYPGVVTVDWKVDGTPVTQGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHTVEKSLSRA 102
               SCOP domains d1jnha1 A:1-108 Immunoglobulin light chain lambda variable domain, VL-lambda                                d1jnha2 A:112-211 Immunoglobulin light chain lambda constant domain, CL-lambda                       SCOP domains
               CATH domains 1jnhA01 A:1-112 Immunoglobulins                                                                              1jnhA02 A:113-210 Immunoglobulins                                                                 - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee...eee.....eeeeeeee.....hhhhh.eeeeee...eeeeeee...ee.......eeeeee..eeeeeee..hhhhheeeeeeee....eee...eeee.....eeeee..hhhhhhh.eeeeeeeeeee....eeeeeee..eee...eee...eee...eeeeeeeeeeehhhhhhh..eeeeeee..eeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC ------------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jnh A   1 QAVVTQESALTTSPGETVTLTCRSSSGAITTSHYANWIQEKPDHLFTGLISGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYICALWFSNQFIFGSGTKVTVKSSPSVTLFPPSSEELETNKATLVCTITDFYPGVVTVDWKVDGTPVTQGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHTVEKSLSAA 211
                                    10        20        30        40        50        60        70        80        90       100       113       123       133       143       153       163       173       183       193       203        
                                                                                                                                     108|                                                                                                   
                                                                                                                                      112

Chain B from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                      
               SCOP domains d1jnhb1 B:1-117 Immunoglobulin heavy chain variable domain, VH                                                       d1jnhb2 B:121-217 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                   SCOP domains
               CATH domains -1jnhB01 B:2-116 Immunoglobulins                                                                                    1jnhB02 B:117-216 Immunoglobulins                                                                - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...ee......eeeeeeee.......eeeeeee.....eeeeeeeehhhheeee.......eeeee.....eeeeee...hhhhheeeeeeeeee..eeeeee...eeee.....eeeee......ee..eeeeeeeeeee.....eeee.hhh....eee...ee....eeeeeeeeee.........eeeeeehhhheeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jnh B   1 EVQLQQSGAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSEDSAVYSCSRGRSLYYTMDYWGQGTSVTVTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVSWNTGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVP 217
                                    10        20        30        40        50        60        70        80        90       100       110      |123       133       143       153       163       173       183       193       203       213    
                                                                                                                                              117|                                                                                                
                                                                                                                                               121

Chain C from PDB  Type:PROTEIN  Length:208
 aligned with LAC1_MOUSE | P01843 from UniProtKB/Swiss-Prot  Length:105

    Alignment length:208
                                                                                     2                                                                                                                                                      
                                                                                    1|                                                  3                                                                                                   
                                     -         -         -         -         -      || -         -         -         -         -        |4        14        24        34        44        54        64        74        84        94        
           LAC1_MOUSE     - --------------------------------------------------------QP--------------------------------------------------KSSPSVTLFPPSSEELETNKATLVCTITDFYPGVVTVDWKVDGTPVTQGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHTVEKSLSRA 102
               SCOP domains d1jnhc1 C:1-108 Immunoglobulin light chain lambda variable domain, VL-lambda                                d1jnhc2 C:112-211 Immunoglobulin light chain lambda constant domain, CL-lambda                       SCOP domains
               CATH domains 1jnhC01 C:1-112 Immunoglobulins                                                                              1jnhC02 C:113-210 Immunoglobulins                                                                 - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeeeee.......hhhhh.eeeeee...eeee.ee...ee.......eeeeee..eeeeeee........eeeeeee....eee............eeeee..hhhhhhh.eeeeeeeeeee....eeeeeee..eee...eee...ee.....eeeeeeeeeehhhhhhh..eeeeeee..eeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC ------------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jnh C   1 QAVVTQESALTTSPGETVTLTCRSSSGAITTSHYANWIQEKPDHLFTGLISGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYICALWFSNQFIFGSGTKVTVKSSPSVTLFPPSSEELETNKATLVCTITDFYPGVVTVDWKVDGTPVTQGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHTVEKSLSAA 211
                                    10        20        30        40        50        60        70        80        90       100       113       123       133       143       153       163       173       183       193       203        
                                                                                                                                     108|                                                                                                   
                                                                                                                                      112

Chain D from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                      
               SCOP domains d1jnhd1 D:1-117 Immunoglobulin heavy chain variable domain, VH                                                       d1jnhd2 D:121-217 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                   SCOP domains
               CATH domains 1jnhD01 D:1-116 Immunoglobulins                                                                                     1jnhD02 D:117-216 Immunoglobulins                                                                - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...ee......eeeeeeee..hhhhheeeeee.......eeeeeeehhhheeee........eeeee....eeeeee........eeeeeeee.....eeeee...eeee.....eeeee......ee..eeeeeeeeeee.....eeee.hhh....eee...ee....eeeeeeeeee.........eeeeeehhhheeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jnh D   1 EVQLQQSGAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSEDSAVYSCSRGRSLYYTMDYWGQGTSVTVTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVSWNTGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVP 217
                                    10        20        30        40        50        60        70        80        90       100       110      |123       133       143       153       163       173       183       193       203       213    
                                                                                                                                              117|                                                                                                
                                                                                                                                               121

Chain E from PDB  Type:PROTEIN  Length:208
 aligned with LAC1_MOUSE | P01843 from UniProtKB/Swiss-Prot  Length:105

    Alignment length:208
                                                                                     2                                                                                                                                                      
                                                                                    1|                                                  3                                                                                                   
                                     -         -         -         -         -      || -         -         -         -         -        |4        14        24        34        44        54        64        74        84        94        
           LAC1_MOUSE     - --------------------------------------------------------QP--------------------------------------------------KSSPSVTLFPPSSEELETNKATLVCTITDFYPGVVTVDWKVDGTPVTQGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHTVEKSLSRA 102
               SCOP domains d1jnhe1 E:1-108 Immunoglobulin light chain lambda variable domain, VL-lambda                                d1jnhe2 E:112-211 Immunoglobulin light chain lambda constant domain, CL-lambda                       SCOP domains
               CATH domains 1jnhE01 E:1-112 Immunoglobulins                                                                              1jnhE02 E:113-210 Immunoglobulins                                                                 - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeeeee.............eeeeee...eeeeeee...ee.......eeeee....eeeeee..hhhhh.eeeeeee....eee...ee..........ee..hhhhhhh.eeeeeeeeeee....eeeeeee..eee...eee...eee...eeeeeeeeeeehhhhhhh..eeeeeee..eeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC ------------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jnh E   1 QAVVTQESALTTSPGETVTLTCRSSSGAITTSHYANWIQEKPDHLFTGLISGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYICALWFSNQFIFGSGTKVTVKSSPSVTLFPPSSEELETNKATLVCTITDFYPGVVTVDWKVDGTPVTQGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHTVEKSLSAA 211
                                    10        20        30        40        50        60        70        80        90       100       113       123       133       143       153       163       173       183       193       203        
                                                                                                                                     108|                                                                                                   
                                                                                                                                      112

Chain F from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                      
               SCOP domains d1jnhf1 F:1-117 Immunoglobulin heavy chain variable domain, VH                                                       d1jnhf2 F:121-217 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                   SCOP domains
               CATH domains 1jnhF01 F:1-116 Immunoglobulins                                                                                     1jnhF02 F:117-216 Immunoglobulins                                                                - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...ee......ee..eeee.........eeeee.....eeeeeeee....eee..................ee..ee...hhhhheeeeeeee.....eeeee...eeee.....eeeee......ee..eeeeeeeeeee.....eeee.hhh....eee...ee....eeeeeeeeee.........eeeeeehhhheeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jnh F   1 EVQLQQSGAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSEDSAVYSCSRGRSLYYTMDYWGQGTSVTVTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVSWNTGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVP 217
                                    10        20        30        40        50        60        70        80        90       100       110      |123       133       143       153       163       173       183       193       203       213    
                                                                                                                                              117|                                                                                                
                                                                                                                                               121

Chain G from PDB  Type:PROTEIN  Length:208
 aligned with LAC1_MOUSE | P01843 from UniProtKB/Swiss-Prot  Length:105

    Alignment length:208
                                                                                     2                                                                                                                                                      
                                                                                    1|                                                  3                                                                                                   
                                     -         -         -         -         -      || -         -         -         -         -        |4        14        24        34        44        54        64        74        84        94        
           LAC1_MOUSE     - --------------------------------------------------------QP--------------------------------------------------KSSPSVTLFPPSSEELETNKATLVCTITDFYPGVVTVDWKVDGTPVTQGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHTVEKSLSRA 102
               SCOP domains d1jnhg1 G:1-108 Immunoglobulin light chain lambda variable domain, VL-lambda                                d1jnhg2 G:112-211 Immunoglobulin light chain lambda constant domain, CL-lambda                       SCOP domains
               CATH domains 1jnhG01 G:1-112 Immunoglobulins                                                                              1jnhG02 G:113-210 Immunoglobulins                                                                 - CATH domains
           Pfam domains (1) ---------------------------------------------------------------------------------------------------------------------C1-set-1jnhG01 G:121-207                                                               ---- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------------------------------------------------------------------------C1-set-1jnhG02 G:121-207                                                               ---- Pfam domains (2)
           Pfam domains (3) ---------------------------------------------------------------------------------------------------------------------C1-set-1jnhG03 G:121-207                                                               ---- Pfam domains (3)
           Pfam domains (4) ---------------------------------------------------------------------------------------------------------------------C1-set-1jnhG04 G:121-207                                                               ---- Pfam domains (4)
         Sec.struct. author ...eee..eee.....eeeeeeee...........eeeeee...eeeeeee...ee.......eeeeee..eeeeeee..hhhhheeeeeeee....eee...eeee.....eeeee..hhhhhhh.eeeeeeeeeee....eeeeeee..eee...eee...eee...eeeeeeeeeeehhhhhhh..eeeeeee..eeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC ------------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jnh G   1 QAVVTQESALTTSPGETVTLTCRSSSGAITTSHYANWIQEKPDHLFTGLISGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYICALWFSNQFIFGSGTKVTVKSSPSVTLFPPSSEELETNKATLVCTITDFYPGVVTVDWKVDGTPVTQGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHTVEKSLSAA 211
                                    10        20        30        40        50        60        70        80        90       100       113       123       133       143       153       163       173       183       193       203        
                                                                                                                                     108|                                                                                                   
                                                                                                                                      112

Chain H from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                      
               SCOP domains d1jnhh1 H:1-117 Immunoglobulin heavy chain variable domain, VH                                                       d1jnhh2 H:121-217 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                   SCOP domains
               CATH domains -1jnhH01 H:2-116 Immunoglobulins                                                                                    1jnhH02 H:117-216 Immunoglobulins                                                                - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...ee......eeeeeee........eeeeeee......eeeeeee....eeeehhhhhh..eeeee....eeeeee...hhhhheeeeeeeeee..eeeeee...eeee.....eeeee......ee..eeeeeeeeeee.....eeee.hhh....eee...ee....eeeeeeeeee.........eeeeeehhhheeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jnh H   1 EVQLQQSGAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSEDSAVYSCSRGRSLYYTMDYWGQGTSVTVTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVSWNTGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVP 217
                                    10        20        30        40        50        60        70        80        90       100       110      |123       133       143       153       163       173       183       193       203       213    
                                                                                                                                              117|                                                                                                
                                                                                                                                               121

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Immunoglobulin-like (3897)

Homologous Superfamily: Immunoglobulins (2282)

House mouse (Mus musculus) (616)

1a	1jnhB01	B:2-116
1b	1jnhB02	B:117-216
1c	1jnhD02	D:117-216
1d	1jnhF02	F:117-216
1e	1jnhH02	H:117-216
1f	1jnhA01	A:1-112
1g	1jnhC01	C:1-112
1h	1jnhE01	E:1-112
1i	1jnhG01	G:1-112
1j	1jnhA02	A:113-210
1k	1jnhC02	C:113-210
1l	1jnhE02	E:113-210
1m	1jnhG02	G:113-210
1n	1jnhH01	H:2-116
1o	1jnhD01	D:1-116
1p	1jnhF01	F:1-116

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Ig (577)

Family: C1-set (338)

Mus musculus (Mouse) (118)

1a	C1-set-1jnhG01	G:121-207
1b	C1-set-1jnhG02	G:121-207
1c	C1-set-1jnhG03	G:121-207
1d	C1-set-1jnhG04	G:121-207

Asymmetric Unit(hide GO term definitions)

Chain A,C,E,G (LAC1_MOUSE | P01843)

molecular function
	GO:0003823	antigen binding	Interacting selectively and non-covalently with an antigen, any substance which is capable of inducing a specific immune response and of reacting with the products of that response, the specific antibody or specifically sensitized T-lymphocytes, or both. Binding may counteract the biological activity of the antigen.
cellular component
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		ECO	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Glu B:153 - Pro B:154	[ RasMol ]
		Glu D:153 - Pro D:154	[ RasMol ]
		Glu F:153 - Pro F:154	[ RasMol ]
		Glu H:153 - Pro H:154	[ RasMol ]
		Phe B:151 - Pro B:152	[ RasMol ]
		Phe D:151 - Pro D:152	[ RasMol ]
		Phe F:151 - Pro F:152	[ RasMol ]
		Phe H:151 - Pro H:152	[ RasMol ]
		Trp B:193 - Pro B:194	[ RasMol ]
		Trp D:193 - Pro D:194	[ RasMol ]
		Trp F:193 - Pro F:194	[ RasMol ]
		Trp H:193 - Pro H:194	[ RasMol ]
		Tyr A:142 - Pro A:143	[ RasMol ]
		Tyr C:142 - Pro C:143	[ RasMol ]
		Tyr E:142 - Pro E:143	[ RasMol ]
		Tyr G:142 - Pro G:143	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]
		Biological Unit 4	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format \| Biol. Unit 3 PNG format \| Biol. Unit 4 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	1jnh
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	LAC1_MOUSE \| P01843
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	LAC1_MOUSE \| P01843
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	LAC1_MOUSE \| P01843	:	1jn6

(no "Related Entries Specified in the PDB File" available for 1JNH)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 4)

Sites (4, 4)

SS Bonds (16, 16)

Cis Peptide Bonds (16, 16)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 4)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (4, 16)

CATH Domains (1, 16)

Pfam Domains (1, 4)

Gene Ontology (2, 2)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File