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1JNH
Asym. Unit
Info
Asym.Unit (250 KB)
Biol.Unit 1 (66 KB)
Biol.Unit 2 (66 KB)
Biol.Unit 3 (66 KB)
Biol.Unit 4 (66 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FAB-ESTRADIOL COMPLEXES
Authors
:
C. Monnet, F. Bettsworth, E. A. Stura, M. -H. Le Du, R. Menez, L. Derrien Justin, B. Gilquin, G. Sibai, N. Battail-Poirot, M. Jolivet, A. Menez M. Arnaud, F. Ducancel, J. B. Charbonnier
Date
:
24 Jul 01 (Deposition) - 06 Feb 02 (Release) - 28 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Igg Fold, Antibody-Hapten Complex, Estradiol, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Monnet, F. Bettsworth, E. A. Stura, M. H. Du, R. Menez, L. Derrien, S. Zinn-Justin, B. Gilquin, G. Sibai, N. Battail-Poirot, M. Jolivet, A. Menez, M. Arnaud, F. Ducancel, J. B. Charbonnier
Highly Specific Anti-Estradiol Antibodies: Structural Characterisation And Binding Diversity.
J. Mol. Biol. V. 315 699 2002
[
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: ESTRADIOL-6 CARBOXYL-METHYL-OXIME (ECOa)
1b: ESTRADIOL-6 CARBOXYL-METHYL-OXIME (ECOb)
1c: ESTRADIOL-6 CARBOXYL-METHYL-OXIME (ECOc)
1d: ESTRADIOL-6 CARBOXYL-METHYL-OXIME (ECOd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ECO
4
Ligand/Ion
ESTRADIOL-6 CARBOXYL-METHYL-OXIME
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TRP A:93 , ASN A:96 , TRP B:33 , GLN B:35 , ALA B:50 , ARG B:59 , SER B:101 , LEU B:102 , THR B:105 , ASP F:55 , ASP F:56 , ARG F:74
BINDING SITE FOR RESIDUE ECO B 351
2
AC2
SOFTWARE
ASN C:96 , TRP D:33 , GLN D:35 , ALA D:50 , ARG D:59 , GLY D:99 , SER D:101 , LEU D:102 , THR D:105
BINDING SITE FOR RESIDUE ECO D 352
3
AC3
SOFTWARE
TRP E:93 , ASN E:96 , TRP F:33 , GLN F:35 , ALA F:50 , ARG F:59 , GLY F:99 , SER F:101 , LEU F:102 , THR F:105
BINDING SITE FOR RESIDUE ECO F 353
4
AC4
SOFTWARE
ASP D:55 , ASP D:56 , ARG D:74 , ASN G:96 , TRP H:33 , GLN H:35 , ALA H:50 , ARG H:59 , GLY H:99 , SER H:101 , LEU H:102 , THR H:105
BINDING SITE FOR RESIDUE ECO H 354
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (A:193-199,C:193-199,E:193-199,G:19...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
LAC1_MOUSE
84-90
4
A:193-199
C:193-199
E:193-199
G:193-199
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 16)
Info
All SCOP Domains
1a: SCOP_d1jnhb2 (B:121-217)
1b: SCOP_d1jnhd2 (D:121-217)
1c: SCOP_d1jnhf2 (F:121-217)
1d: SCOP_d1jnhh2 (H:121-217)
2a: SCOP_d1jnha2 (A:112-211)
2b: SCOP_d1jnhc2 (C:112-211)
2c: SCOP_d1jnhe2 (E:112-211)
2d: SCOP_d1jnhg2 (G:112-211)
3a: SCOP_d1jnhb1 (B:1-117)
3b: SCOP_d1jnhd1 (D:1-117)
3c: SCOP_d1jnhf1 (F:1-117)
3d: SCOP_d1jnhh1 (H:1-117)
4a: SCOP_d1jnha1 (A:1-108)
4b: SCOP_d1jnhc1 (C:1-108)
4c: SCOP_d1jnhe1 (E:1-108)
4d: SCOP_d1jnhg1 (G:1-108)
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)
(
)
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)
(
)
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)
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)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus) [TaxId: 10090]
(414)
1a
d1jnhb2
B:121-217
1b
d1jnhd2
D:121-217
1c
d1jnhf2
F:121-217
1d
d1jnhh2
H:121-217
Protein domain
:
Immunoglobulin light chain lambda constant domain, CL-lambda
(68)
Mouse (Mus musculus) [TaxId: 10090]
(21)
2a
d1jnha2
A:112-211
2b
d1jnhc2
C:112-211
2c
d1jnhe2
E:112-211
2d
d1jnhg2
G:112-211
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
(177)
3a
d1jnhb1
B:1-117
3b
d1jnhd1
D:1-117
3c
d1jnhf1
F:1-117
3d
d1jnhh1
H:1-117
Protein domain
:
Immunoglobulin light chain lambda variable domain, VL-lambda
(89)
Mouse (Mus musculus) [TaxId: 10090]
(35)
4a
d1jnha1
A:1-108
4b
d1jnhc1
C:1-108
4c
d1jnhe1
E:1-108
4d
d1jnhg1
G:1-108
[
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]
CATH Domains
(1, 16)
Info
all CATH domains
1a: CATH_1jnhB01 (B:2-116)
1b: CATH_1jnhB02 (B:117-216)
1c: CATH_1jnhD02 (D:117-216)
1d: CATH_1jnhF02 (F:117-216)
1e: CATH_1jnhH02 (H:117-216)
1f: CATH_1jnhA01 (A:1-112)
1g: CATH_1jnhC01 (C:1-112)
1h: CATH_1jnhE01 (E:1-112)
1i: CATH_1jnhG01 (G:1-112)
1j: CATH_1jnhA02 (A:113-210)
1k: CATH_1jnhC02 (C:113-210)
1l: CATH_1jnhE02 (E:113-210)
1m: CATH_1jnhG02 (G:113-210)
1n: CATH_1jnhH01 (H:2-116)
1o: CATH_1jnhD01 (D:1-116)
1p: CATH_1jnhF01 (F:1-116)
View:
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)
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
1a
1jnhB01
B:2-116
1b
1jnhB02
B:117-216
1c
1jnhD02
D:117-216
1d
1jnhF02
F:117-216
1e
1jnhH02
H:117-216
1f
1jnhA01
A:1-112
1g
1jnhC01
C:1-112
1h
1jnhE01
E:1-112
1i
1jnhG01
G:1-112
1j
1jnhA02
A:113-210
1k
1jnhC02
C:113-210
1l
1jnhE02
E:113-210
1m
1jnhG02
G:113-210
1n
1jnhH01
H:2-116
1o
1jnhD01
D:1-116
1p
1jnhF01
F:1-116
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_C1_set_1jnhG01 (G:121-207)
1b: PFAM_C1_set_1jnhG02 (G:121-207)
1c: PFAM_C1_set_1jnhG03 (G:121-207)
1d: PFAM_C1_set_1jnhG04 (G:121-207)
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Clans
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)
(
)
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(
)
(
)
Organisms
(
)
(
)
Clan
:
Ig
(577)
Family
:
C1-set
(338)
Mus musculus (Mouse)
(118)
1a
C1-set-1jnhG01
G:121-207
1b
C1-set-1jnhG02
G:121-207
1c
C1-set-1jnhG03
G:121-207
1d
C1-set-1jnhG04
G:121-207
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