1JL2 - JenaLib

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:150
 aligned with RNH_ECOLI | P0A7Y4 from UniProtKB/Swiss-Prot  Length:155

    Alignment length:150
                                                                                                          81                                                                      
                                                                                                        80 |                                                                      
                                    12        22        32        42        52        62        72       |81        91       101       111       121       131       141       151
            RNH_ECOLI     3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGY 151
               SCOP domains d1jl2a_ A: RNase H (RNase HI)                                                                                                                          SCOP domains
               CATH domains 1jl2A00 A:3-152  [code=3.30.420.10, no name defined]                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeee....eeeeeeeeee....eeeeeeeeeeehhhhhhhhhhhhhhhh.....eeeeee.hhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1jl2 A   3 KQVEIFTDGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELKAAIEGLKALKEPAEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHAGHPENERADELARAAAMNPTLEDTGY 152
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152

Chain A from PDB  Type:PROTEIN  Length:150
 aligned with RNH_THET8 | P29253 from UniProtKB/Swiss-Prot  Length:166

    Alignment length:160
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166
            RNH_THET8     7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKEPCEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHTGHPENERVDREARRQAQSQAKTPCPPRAPTLFHEEA 166
               SCOP domains d1jl2a_ A: RNase H (RNase HI)                                                                                                                                    SCOP domains
               CATH domains 1jl2A00 A:3-152  [code=3.30.420.10, no name defined]                                                                                                             CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee....eeeeeeeeee....eeeeeeeeeeehhhhhhhhhhhhhhhh.....eeeeee.hhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhh.----------........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jl2 A   3 KQVEIFTDGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELKAAIEGLKALKEPAEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHAGHPENERADELARAAAMN----------PTLEDTGY 152
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142 |       -  |    152
                                                                                                                                                                       144        145

Chain B from PDB  Type:PROTEIN  Length:133
 aligned with RNH_ECOLI | P0A7Y4 from UniProtKB/Swiss-Prot  Length:155

    Alignment length:149
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142         
            RNH_ECOLI     3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGY 151
               SCOP domains d1jl2b_ B: RNase H (RNase HI)                                                                                                                         SCOP domains
               CATH domains 1jl2B00 B:3-152  [code=3.30.420.10, no name defined]                                                                                                  CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee....eeeeeeeeeee..eeeeeeeeeeeehhhhhhhhhhhhhhhh.....eeeeee.hhhhhhhhhh----------------...hhhhhhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jl2 B   3 KQVEIFTDGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELKAAIEGLKALKEPAEVDLYTDSHYLKKAFTE----------------PVKNRDLWEALLLAMAPHRVRFHFVKGHAGHPENERADELARAAAMNPTLEDTGY 152
                                    12        22        32        42        52        62        72       | -         -    |  103       113       123       133       143         
                                                                                                        80               98

Chain B from PDB  Type:PROTEIN  Length:133
 aligned with RNH_THET8 | P29253 from UniProtKB/Swiss-Prot  Length:166

    Alignment length:160
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166
            RNH_THET8     7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKEPCEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHTGHPENERVDREARRQAQSQAKTPCPPRAPTLFHEEA 166
               SCOP domains d1jl2b_ B: RNase H (RNase HI)                                                                                                                                    SCOP domains
               CATH domains 1jl2B00 B:3-152  [code=3.30.420.10, no name defined]                                                                                                             CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee....eeeeeeeeeee..eeeeeeeeeeeehhhhhhhhhhhhhhhh.....eeeeee.hhhhhhhhhh-----------------...hhhhhhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhhh----------........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jl2 B   3 KQVEIFTDGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELKAAIEGLKALKEPAEVDLYTDSHYLKKAFTE-----------------PVKNRDLWEALLLAMAPHRVRFHFVKGHAGHPENERADELARAAAMN----------PTLEDTGY 152
                                    12        22        32        42        52        62        72       | -         -     | 102       112       122       132       142 |       -  |    152
                                                                                                        80                98                                           144        145

Chain C from PDB  Type:PROTEIN  Length:133
 aligned with RNH_ECOLI | P0A7Y4 from UniProtKB/Swiss-Prot  Length:155

    Alignment length:150
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152
            RNH_ECOLI     3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQ 152
               SCOP domains d1jl2c_ C: RNase H (RNase HI)                                                                                                                          SCOP domains
               CATH domains 1jl2C00 C:3-153  [code=3.30.420.10, no name defined]                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeee....eeeeeeeeee....eeeeeeeeeeehhhhhhhhhhhhhhhh.....eeeeee.hhhhhhhhh.-----------------..hhhhhhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1jl2 C   3 KQVEIFTDGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELKAAIEGLKALKEPAEVDLYTDSHYLKKAFTE-----------------VKNRDLWEALLLAMAPHRVRFHFVKGHAGHPENERADELARAAAMNPTLEDTGYQ 153
                                    12        22        32        42        52        62        72       | -         -     | 103       113       123       133       143       153
                                                                                                        80                99

Chain C from PDB  Type:PROTEIN  Length:133
 aligned with RNH_THET8 | P29253 from UniProtKB/Swiss-Prot  Length:166

    Alignment length:157
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       
            RNH_THET8     7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKEPCEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHTGHPENERVDREARRQAQSQAKTPCPPRAPTLFH 163
               SCOP domains d1jl2c_ C: RNase H (RNase HI)                                                                                                                                 SCOP domains
               CATH domains 1jl2C00 C:3-153  [code=3.30.420.10, no name defined]                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee....eeeeeeeeee....eeeeeeeeeeehhhhhhhhhhhhhhhh.....eeeeee.hhhhhhhhh.------------------..hhhhhhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhh.------......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jl2 C   3 KQVEIFTDGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELKAAIEGLKALKEPAEVDLYTDSHYLKKAFTE------------------VKNRDLWEALLLAMAPHRVRFHFVKGHAGHPENERADELARAAAMN------PTLEDTGYQ 153
                                    12        22        32        42        52        62        72       | -         -      |102       112       122       132       142 |     146       
                                                                                                        80                 99                                          144    145

Chain D from PDB  Type:PROTEIN  Length:146
 aligned with RNH_ECOLI | P0A7Y4 from UniProtKB/Swiss-Prot  Length:155

    Alignment length:151
                                                                                                          81                                                                       
                                                                                                        80 |                                                                       
                                    12        22        32        42        52        62        72       |81        91       101       111       121       131       141       151 
            RNH_ECOLI     3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQ 152
               SCOP domains d1jl2d_ D: RNase H (RNase HI)                                                                                                                           SCOP domains
               CATH domains 1jl2D00 D:3-153  [code=3.30.420.10, no name defined]                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee....eeeeeeeeeee..eeeeeeeeeeeehhhhhhhhhhhhhhhh.....eeeeee.hhhhhhhhhh.....-----..........hhhhhhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jl2 D   3 KQVEIFTDGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELKAAIEGLKALKEPAEVDLYTDSHYLKKAFTEGWLEG-----WRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHAGHPENERADELARAAAMNPTLEDTGYQ 153
                                    12        22        32        42        52        62        72        82  |     92       102       112       122       132       142       152 
                                                                                                             85    91

Chain D from PDB  Type:PROTEIN  Length:146
 aligned with RNH_THET8 | P29253 from UniProtKB/Swiss-Prot  Length:166

    Alignment length:157
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       
            RNH_THET8     7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKEPCEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHTGHPENERVDREARRQAQSQAKTPCPPRAPTLFH 163
               SCOP domains d1jl2d_ D: RNase H (RNase HI)                                                                                                                                 SCOP domains
               CATH domains 1jl2D00 D:3-153  [code=3.30.420.10, no name defined]                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee....eeeeeeeeeee..eeeeeeeeeeeehhhhhhhhhhhhhhhh.....eeeeee.hhhhhhhhhh.....-----..........hhhhhhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhh.------......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jl2 D   3 KQVEIFTDGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELKAAIEGLKALKEPAEVDLYTDSHYLKKAFTEGWLEG-----WRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHAGHPENERADELARAAAMN------PTLEDTGYQ 153
                                    12        22        32        42        52        62        72        82  |     92       102       112       122       132       142 |     146       
                                                                                                             85    91                                                  144    145

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (RNH_THET8 | P29253)

molecular function
	GO:0004523	RNA-DNA hybrid ribonuclease activity	Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters.
	GO:0004519	endonuclease activity	Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0004518	nuclease activity	Catalysis of the hydrolysis of ester linkages within nucleic acids.
	GO:0003676	nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.
biological process
	GO:0006401	RNA catabolic process	The chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	The chemical reactions and pathways involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides.
	GO:0090305	nucleic acid phosphodiester bond hydrolysis	The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Chain A,B,C,D (RNH_ECOLI | P0A7Y4)

molecular function
	GO:0004523	RNA-DNA hybrid ribonuclease activity	Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters.
	GO:0004519	endonuclease activity	Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0004518	nuclease activity	Catalysis of the hydrolysis of ester linkages within nucleic acids.
	GO:0003676	nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.
biological process
	GO:0043137	DNA replication, removal of RNA primer	Removal of the Okazaki RNA primer from the lagging strand of replicating DNA, by a combination of the actions of DNA polymerase, DNA helicase and an endonuclease.
	GO:0006401	RNA catabolic process	The chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	The chemical reactions and pathways involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides.
	GO:0090305	nucleic acid phosphodiester bond hydrolysis	The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (1, 4)

Pfam Domains (0, 0)

Gene Ontology (12, 56)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File