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(-) Description

Title :  CRYSTAL STRUCTURE OF MANGANESE CATALASE FROM LACTOBACILLUS PLANTARUM
 
Authors :  V. V. Barynin, M. M. Whittaker, S. V. Antonyuk, V. S. Lamzin, P. M. Harrison, P. J. Artymiuk, J. W. Whittaker
Date :  13 Jul 01  (Deposition) - 13 Jul 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.84
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Hexamer, Catalase Dimanganese, Metalloenzyme, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. V. Barynin, M. M. Whittaker, S. V. Antonyuk, V. S. Lamzin, P. M. Harrison, P. J. Artymiuk, J. W. Whittaker
Crystal Structure Of Manganese Catalase From Lactobacillus Plantarum.
Structure V. 9 725 2001
PubMed-ID: 11587647  |  Reference-DOI: 10.1016/S0969-2126(01)00628-1
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PSEUDOCATALASE
    Atcc: 14431
    Chains: A, B, C, D, E, F
    EC Number: 1.11.1.6
    Organism Scientific: LACTOBACILLUS PLANTARUM
    Organism Taxid: 1590
    Strain: ATCC 14431
    Synonym: MANGANESE-CONTAINING CATALASE

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 36)

Asymmetric/Biological Unit (3, 36)
No.NameCountTypeFull Name
1CA6Ligand/IonCALCIUM ION
2MN312Ligand/IonMANGANESE (III) ION
3OH18Ligand/IonHYDROXIDE ION

(-) Sites  (36, 36)

Asymmetric Unit (36, 36)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:57 , ASP A:61 , ASN F:218 , SER F:220 , GLY F:222BINDING SITE FOR RESIDUE CA A 1272
02AC2SOFTWAREASP B:57 , ASP B:61 , ASN C:218 , SER C:220 , GLY C:222 , HOH C:3332BINDING SITE FOR RESIDUE CA B 2272
03AC3SOFTWAREASN B:218 , SER B:220 , GLY B:222 , ASP C:57 , ASP C:61BINDING SITE FOR RESIDUE CA C 3272
04AC4SOFTWAREASP D:57 , ASP D:61 , ASN E:218 , SER E:220 , GLY E:222BINDING SITE FOR RESIDUE CA D 4272
05AC5SOFTWAREASN D:218 , SER D:220 , GLY D:222 , SER D:225 , HOH D:4334 , ASP E:57 , ASP E:61BINDING SITE FOR RESIDUE CA E 5272
06AC6SOFTWAREASN A:218 , SER A:220 , GLY A:222 , SER A:225 , ASP F:57 , ASP F:61BINDING SITE FOR RESIDUE CA F 6272
07AC7SOFTWAREGLU A:66 , HIS A:69 , HIS A:181 , MN3 A:1267 , MN3 A:1268 , OH A:1270 , OH A:1271BINDING SITE FOR RESIDUE OH A 1269
08AC8SOFTWAREGLU A:35 , GLU A:66 , ARG A:147 , GLU A:148 , GLU A:178 , MN3 A:1267 , MN3 A:1268 , OH A:1269 , OH A:1271BINDING SITE FOR RESIDUE OH A 1270
09AC9SOFTWAREGLU A:35 , HIS A:69 , LEU A:174 , GLU A:178 , MN3 A:1267 , OH A:1269 , OH A:1270BINDING SITE FOR RESIDUE OH A 1271
10BC1SOFTWAREGLU B:66 , HIS B:69 , HIS B:181 , MN3 B:2267 , MN3 B:2268 , OH B:2270 , OH B:2271BINDING SITE FOR RESIDUE OH B 2269
11BC2SOFTWAREGLU B:35 , GLU B:66 , ARG B:147 , GLU B:148 , GLU B:178 , MN3 B:2267 , MN3 B:2268 , OH B:2269 , OH B:2271BINDING SITE FOR RESIDUE OH B 2270
12BC3SOFTWAREGLU B:35 , HIS B:69 , LEU B:174 , GLU B:178 , MN3 B:2267 , OH B:2269 , OH B:2270BINDING SITE FOR RESIDUE OH B 2271
13BC4SOFTWAREGLU C:35 , GLU C:66 , HIS C:69 , HIS C:181 , MN3 C:3267 , MN3 C:3268 , OH C:3270 , OH C:3271BINDING SITE FOR RESIDUE OH C 3269
14BC5SOFTWAREGLU C:35 , GLU C:66 , ARG C:147 , GLU C:148 , GLU C:178 , MN3 C:3267 , MN3 C:3268 , OH C:3269 , OH C:3271BINDING SITE FOR RESIDUE OH C 3270
15BC6SOFTWAREGLU C:35 , HIS C:69 , LEU C:174 , GLU C:178 , MN3 C:3267 , OH C:3269 , OH C:3270BINDING SITE FOR RESIDUE OH C 3271
16BC7SOFTWAREGLU D:66 , HIS D:69 , GLU D:148 , HIS D:181 , MN3 D:4267 , MN3 D:4268 , OH D:4270 , OH D:4271BINDING SITE FOR RESIDUE OH D 4269
17BC8SOFTWAREGLU D:35 , GLU D:66 , ARG D:147 , GLU D:148 , GLU D:178 , MN3 D:4267 , MN3 D:4268 , OH D:4269 , OH D:4271BINDING SITE FOR RESIDUE OH D 4270
18BC9SOFTWAREGLU D:35 , HIS D:69 , LEU D:174 , GLU D:178 , MN3 D:4267 , OH D:4269 , OH D:4270BINDING SITE FOR RESIDUE OH D 4271
19CC1SOFTWAREGLU E:66 , HIS E:69 , HIS E:181 , MN3 E:5267 , MN3 E:5268 , OH E:5270 , OH E:5271BINDING SITE FOR RESIDUE OH E 5269
20CC2SOFTWAREGLU E:35 , GLU E:66 , ARG E:147 , GLU E:148 , GLU E:178 , MN3 E:5267 , MN3 E:5268 , OH E:5269 , OH E:5271BINDING SITE FOR RESIDUE OH E 5270
21CC3SOFTWAREGLU E:35 , HIS E:69 , LEU E:174 , GLU E:178 , MN3 E:5267 , OH E:5269 , OH E:5270BINDING SITE FOR RESIDUE OH E 5271
22CC4SOFTWAREGLU F:66 , HIS F:69 , HIS F:181 , MN3 F:6267 , MN3 F:6268 , OH F:6270 , OH F:6271BINDING SITE FOR RESIDUE OH F 6269
23CC5SOFTWAREGLU F:35 , GLU F:66 , ARG F:147 , GLU F:148 , GLU F:178 , MN3 F:6267 , MN3 F:6268 , OH F:6269 , OH F:6271BINDING SITE FOR RESIDUE OH F 6270
24CC6SOFTWAREGLU F:35 , HIS F:69 , LEU F:174 , GLU F:178 , MN3 F:6267 , OH F:6269 , OH F:6270BINDING SITE FOR RESIDUE OH F 6271
25CC7SOFTWAREGLU A:35 , GLU A:66 , HIS A:69 , MN3 A:1268 , OH A:1269 , OH A:1270 , OH A:1271BINDING SITE FOR RESIDUE MN3 A 1267
26CC8SOFTWAREGLU A:66 , ARG A:147 , GLU A:148 , HIS A:181 , MN3 A:1267 , OH A:1269 , OH A:1270BINDING SITE FOR RESIDUE MN3 A 1268
27CC9SOFTWAREGLU B:35 , GLU B:66 , HIS B:69 , MN3 B:2268 , OH B:2269 , OH B:2270 , OH B:2271BINDING SITE FOR RESIDUE MN3 B 2267
28DC1SOFTWAREGLU B:66 , ARG B:147 , GLU B:148 , HIS B:181 , MN3 B:2267 , OH B:2269 , OH B:2270BINDING SITE FOR RESIDUE MN3 B 2268
29DC2SOFTWAREGLU C:35 , GLU C:66 , HIS C:69 , MN3 C:3268 , OH C:3269 , OH C:3270 , OH C:3271BINDING SITE FOR RESIDUE MN3 C 3267
30DC3SOFTWAREGLU C:66 , ARG C:147 , GLU C:148 , HIS C:181 , MN3 C:3267 , OH C:3269 , OH C:3270BINDING SITE FOR RESIDUE MN3 C 3268
31DC4SOFTWAREGLU D:35 , GLU D:66 , HIS D:69 , MN3 D:4268 , OH D:4269 , OH D:4270 , OH D:4271BINDING SITE FOR RESIDUE MN3 D 4267
32DC5SOFTWAREGLU D:66 , ARG D:147 , GLU D:148 , HIS D:181 , MN3 D:4267 , OH D:4269 , OH D:4270BINDING SITE FOR RESIDUE MN3 D 4268
33DC6SOFTWAREGLU E:35 , GLU E:66 , HIS E:69 , MN3 E:5268 , OH E:5269 , OH E:5270 , OH E:5271BINDING SITE FOR RESIDUE MN3 E 5267
34DC7SOFTWAREGLU E:66 , ARG E:147 , GLU E:148 , HIS E:181 , MN3 E:5267 , OH E:5269 , OH E:5270BINDING SITE FOR RESIDUE MN3 E 5268
35DC8SOFTWAREGLU F:35 , GLU F:66 , HIS F:69 , MN3 F:6268 , OH F:6269 , OH F:6270 , OH F:6271BINDING SITE FOR RESIDUE MN3 F 6267
36DC9SOFTWAREGLU F:66 , ARG F:147 , GLU F:148 , HIS F:181 , MN3 F:6267 , OH F:6269 , OH F:6270BINDING SITE FOR RESIDUE MN3 F 6268

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1JKU)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Val A:200 -Pro A:201
2Val B:200 -Pro B:201
3Val C:200 -Pro C:201
4Val D:200 -Pro D:201
5Val E:200 -Pro E:201
6Val F:200 -Pro F:201

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1JKU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1JKU)

(-) Exons   (0, 0)

(no "Exon" information available for 1JKU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:266
 aligned with MCAT_LACPN | P60355 from UniProtKB/Swiss-Prot  Length:266

    Alignment length:266
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260      
           MCAT_LACPN     1 MFKHTRKLQYNAKPDRSDPIMARRLQESLGGQWGETTGMMSYLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGIIVPGDMKEIEHSEFSHVLMNFSDGDGSKAFEGQVAKDGEKFTYQENPEAMGGIPHIKPGDPRLHNHQG 266
               SCOP domains d1jkua_ A: Manganese catalase (T-catalase)                                                                                                                                                                                                                                 SCOP domains
               CATH domains 1jkuA01 A:1-203  [code=1.20.1260.10, no name defined]                                                                                                                                                      1jkuA02 A:204-266 manganese catalase, domain 2, chain A         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.............hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh.hhhhhhhhhhhhhhhh................hhhh....hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh.eee.....hhhhhhh..........eee...............hhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jku A   1 MFKHTRKLQYNAKPDRSDPIMARRLQESLGGQWGETTGMMSYLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGIIVPGDMKEIEHSEFSHVLMNFSDGDGSKAFEGQVAKDGEKFTYQENPEAMGGIPHIKPGDPRLHNHQG 266
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260      


Chain B from PDB  Type:PROTEIN  Length:266
 aligned with MCAT_LACPN | P60355 from UniProtKB/Swiss-Prot  Length:266

    Alignment length:266
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260      
           MCAT_LACPN     1 MFKHTRKLQYNAKPDRSDPIMARRLQESLGGQWGETTGMMSYLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGIIVPGDMKEIEHSEFSHVLMNFSDGDGSKAFEGQVAKDGEKFTYQENPEAMGGIPHIKPGDPRLHNHQG 266
               SCOP domains d1jkub_ B: Manganese catalase (T-catalase)                                                                                                                                                                                                                                 SCOP domains
               CATH domains 1jkuB01 B:1-203  [code=1.20.1260.10, no name defined]                                                                                                                                                      1jkuB02 B:204-266 manganese catalase, domain 2, chain A         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.............hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh.hhhhhhhhhhhhhhhh................hhhh....hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh.eee.....hhhhhhh..........eee...............hhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jku B   1 MFKHTRKLQYNAKPDRSDPIMARRLQESLGGQWGETTGMMSYLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGIIVPGDMKEIEHSEFSHVLMNFSDGDGSKAFEGQVAKDGEKFTYQENPEAMGGIPHIKPGDPRLHNHQG 266
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260      


Chain C from PDB  Type:PROTEIN  Length:266
 aligned with MCAT_LACPN | P60355 from UniProtKB/Swiss-Prot  Length:266

    Alignment length:266
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260      
           MCAT_LACPN     1 MFKHTRKLQYNAKPDRSDPIMARRLQESLGGQWGETTGMMSYLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGIIVPGDMKEIEHSEFSHVLMNFSDGDGSKAFEGQVAKDGEKFTYQENPEAMGGIPHIKPGDPRLHNHQG 266
               SCOP domains d1jkuc_ C: Manganese catalase (T-catalase)                                                                                                                                                                                                                                 SCOP domains
               CATH domains 1jkuC01 C:1-203  [code=1.20.1260.10, no name defined]                                                                                                                                                      1jkuC02 C:204-266 manganese catalase, domain 2, chain A         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.............hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh..hhhhhhhhhhhhhhh................hhhh....hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh.eee.....hhhhhhh..........eee...............hhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jku C   1 MFKHTRKLQYNAKPDRSDPIMARRLQESLGGQWGETTGMMSYLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGIIVPGDMKEIEHSEFSHVLMNFSDGDGSKAFEGQVAKDGEKFTYQENPEAMGGIPHIKPGDPRLHNHQG 266
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260      


Chain D from PDB  Type:PROTEIN  Length:266
 aligned with MCAT_LACPN | P60355 from UniProtKB/Swiss-Prot  Length:266

    Alignment length:266
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260      
           MCAT_LACPN     1 MFKHTRKLQYNAKPDRSDPIMARRLQESLGGQWGETTGMMSYLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGIIVPGDMKEIEHSEFSHVLMNFSDGDGSKAFEGQVAKDGEKFTYQENPEAMGGIPHIKPGDPRLHNHQG 266
               SCOP domains d1jkud_ D: Manganese catalase (T-catalase)                                                                                                                                                                                                                                 SCOP domains
               CATH domains 1jkuD01 D:1-203  [code=1.20.1260.10, no name defined]                                                                                                                                                      1jkuD02 D:204-266 manganese catalase, domain 2, chain A         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.............hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh..hhhhhhhhhhhhhhh................hhhh....hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh.eee.....hhhhhhh..........eee...............hhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jku D   1 MFKHTRKLQYNAKPDRSDPIMARRLQESLGGQWGETTGMMSYLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGIIVPGDMKEIEHSEFSHVLMNFSDGDGSKAFEGQVAKDGEKFTYQENPEAMGGIPHIKPGDPRLHNHQG 266
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260      


Chain E from PDB  Type:PROTEIN  Length:266
 aligned with MCAT_LACPN | P60355 from UniProtKB/Swiss-Prot  Length:266

    Alignment length:266
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260      
           MCAT_LACPN     1 MFKHTRKLQYNAKPDRSDPIMARRLQESLGGQWGETTGMMSYLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGIIVPGDMKEIEHSEFSHVLMNFSDGDGSKAFEGQVAKDGEKFTYQENPEAMGGIPHIKPGDPRLHNHQG 266
               SCOP domains d1jkue_ E: Manganese catalase (T-catalase)                                                                                                                                                                                                                                 SCOP domains
               CATH domains 1jkuE01 E:1-203  [code=1.20.1260.10, no name defined]                                                                                                                                                      1jkuE02 E:204-266 manganese catalase, domain 2, chain A         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.............hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh..hhhhhhhhhhhhhhh................hhhh....hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh.eee.....hhhhhhh..........eee...............hhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jku E   1 MFKHTRKLQYNAKPDRSDPIMARRLQESLGGQWGETTGMMSYLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGIIVPGDMKEIEHSEFSHVLMNFSDGDGSKAFEGQVAKDGEKFTYQENPEAMGGIPHIKPGDPRLHNHQG 266
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260      


Chain F from PDB  Type:PROTEIN  Length:266
 aligned with MCAT_LACPN | P60355 from UniProtKB/Swiss-Prot  Length:266

    Alignment length:266
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260      
           MCAT_LACPN     1 MFKHTRKLQYNAKPDRSDPIMARRLQESLGGQWGETTGMMSYLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGIIVPGDMKEIEHSEFSHVLMNFSDGDGSKAFEGQVAKDGEKFTYQENPEAMGGIPHIKPGDPRLHNHQG 266
               SCOP domains d1jkuf_ F: Manganese catalase (T-catalase)                                                                                                                                                                                                                                 SCOP domains
               CATH domains 1jkuF01 F:1-203  [code=1.20.1260.10, no name defined]                                                                                                                                                      1jkuF02 F:204-266 manganese catalase, domain 2, chain A         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.............hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh.hhhhhhhhhhhhhhhh................hhhh....hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh.eee.....hhhhhhh..........eee...............hhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jku F   1 MFKHTRKLQYNAKPDRSDPIMARRLQESLGGQWGETTGMMSYLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGIIVPGDMKEIEHSEFSHVLMNFSDGDGSKAFEGQVAKDGEKFTYQENPEAMGGIPHIKPGDPRLHNHQG 266
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (2, 12)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1JKU)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (MCAT_LACPN | P60355)
molecular function
    GO:0004096    catalase activity    Catalysis of the reaction: 2 hydrogen peroxide = O2 + 2 H2O.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0004601    peroxidase activity    Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O.
biological process
    GO:0098869    cellular oxidant detoxification    Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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 Related Entries

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        MCAT_LACPN | P60355: 1jkv 1o9i

(-) Related Entries Specified in the PDB File

1jkv THE STRUCTURE OF COMPLEXED L.PLANTARUM MANGANESE CATALASE