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Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   STRUCTURE OF ARTOCARPIN COMPLEXED WITH ME-ALPHA-MANNOSE

Authors :   J. V. Pratap, A. A. Jeyaprakash, P. G. Rani, K. Sekar, A. Surolia, M. Vijayan

Date :   30 Oct 01 (Deposition) - 27 Mar 02 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.90

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   All Beta, Greek Key Motif, Beta Prism I Fold, Plant Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. V. Pratap, A. A. Jeyaprakash, P. G. Rani, K. Sekar, A. Surolia, M. Vijayan
Crystal Structures Of Artocarpin, A Moraceae Lectin With Mannose Specificity, And Its Complex With Methyl-Alpha-D-Mannose: Implications To The Generation Of Carbohydrate Specificity.
J. Mol. Biol. V. 317 237 2002
PubMed-ID: 11902840 | Reference-DOI: 10.1006/JMBI.2001.5432
(for further references see the PDB file header)

Molecule 1 - ARTOCARPIN
	Chains	:	A, B, C, D
	Organism Scientific	:	ARTOCARPUS INTEGER
	Organism Taxid	:	3490
	Other Details	:	SEEDS

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 8)

No.	Name	Count	Type	Full Name
1	AYA	4	Mod. Amino Acid	N-ACETYLALANINE
2	MMA	4	Ligand/Ion	O1-METHYL-MANNOSE

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:14 , GLY A:15 , GLY A:137 , ASP A:138 , LEU A:139 , ASP A:141	BINDING SITE FOR RESIDUE MMA A 401
2	AC2	SOFTWARE	GLY B:14 , GLY B:15 , GLY B:137 , ASP B:138 , LEU B:139 , ASP B:141	BINDING SITE FOR RESIDUE MMA B 402
3	AC3	SOFTWARE	GLY C:14 , GLY C:15 , GLY C:137 , ASP C:138 , LEU C:139 , ASP C:141	BINDING SITE FOR RESIDUE MMA C 403
4	AC4	SOFTWARE	GLY A:117 , GLY D:14 , GLY D:15 , THR D:91 , GLY D:137 , ASP D:138 , LEU D:139 , ASP D:141	BINDING SITE FOR RESIDUE MMA D 404

(no "SS Bond" information available for 1J4U)

Asymmetric/Biological Unit

No.	Residues
1	Phe A:71	-	Pro A:72
2	Phe B:71	-	Pro B:72
3	Phe C:71	-	Pro C:72
4	Phe D:71	-	Pro D:72

(no "SAP(SNP)/Variant" information available for 1J4U)

(no "PROSITE Motif" information available for 1J4U)

(no "Exon" information available for 1J4U)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:149
 aligned with Q7M1T4_ARTIN | Q7M1T4 from UniProtKB/TrEMBL  Length:149

    Alignment length:149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140         
         Q7M1T4_ARTIN     1 ASQTITVGPWGGPGGNGWDDGSYTGIRQIELSYKEAIGSFSVIYDLNGEPFSGPKHTSKLPYKNVKIELRFPDEFLESVSGYTAPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGVHMAL 149
               SCOP domains d1j4ua_ A: Artocarpin                                                                                                                                 SCOP domains
               CATH domains -1j4uA00 A:2-149  [code=2.100.10.30, no name defined]                                                                                                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee....eeee.....eeeeeeeee...eeeeeeeeee..eeee..........eeeeee.......eeeeeeeeee........eeeeeeeeee....eeeee.....eeeeeeeee.eeeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1j4u A   1 aSQTITVGSWGGPGGNGWDEGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVKIELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGIHMSL 149
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140         
                            |                                                                                                                                                    
                            1-AYA

Chain B from PDB  Type:PROTEIN  Length:149
 aligned with Q7M1T4_ARTIN | Q7M1T4 from UniProtKB/TrEMBL  Length:149

    Alignment length:149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140         
         Q7M1T4_ARTIN     1 ASQTITVGPWGGPGGNGWDDGSYTGIRQIELSYKEAIGSFSVIYDLNGEPFSGPKHTSKLPYKNVKIELRFPDEFLESVSGYTAPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGVHMAL 149
               SCOP domains d1j4ub_ B: Artocarpin                                                                                                                                 SCOP domains
               CATH domains -1j4uB00 B:2-149  [code=2.100.10.30, no name defined]                                                                                                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee....eeee.....eeeeeeeee...eeeeeeeeee..eeee..........eeeeee.......eeeeeeeeee........eeeeeeeeee....eeeee.....eeeeeeeee.eeeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1j4u B   1 aSQTITVGSWGGPGGNGWDEGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVKIELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGIHMSL 149
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140         
                            1-AYA

Chain C from PDB  Type:PROTEIN  Length:149
 aligned with Q7M1T4_ARTIN | Q7M1T4 from UniProtKB/TrEMBL  Length:149

    Alignment length:149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140         
         Q7M1T4_ARTIN     1 ASQTITVGPWGGPGGNGWDDGSYTGIRQIELSYKEAIGSFSVIYDLNGEPFSGPKHTSKLPYKNVKIELRFPDEFLESVSGYTAPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGVHMAL 149
               SCOP domains d1j4uc_ C: Artocarpin                                                                                                                                 SCOP domains
               CATH domains -1j4uC00 C:2-149  [code=2.100.10.30, no name defined]                                                                                                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee....eeee.....eeeeeeeee...eeeeeeeeee..eeee..........eeeeee.......eeeeeeeeee........eeeeeeeeee....eeeee.....eeeeeeeee.eeeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1j4u C   1 aSQTITVGSWGGPGGNGWDEGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVKIELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGIHMSL 149
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140         
                            1-AYA

Chain D from PDB  Type:PROTEIN  Length:149
 aligned with Q7M1T4_ARTIN | Q7M1T4 from UniProtKB/TrEMBL  Length:149

    Alignment length:149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140         
         Q7M1T4_ARTIN     1 ASQTITVGPWGGPGGNGWDDGSYTGIRQIELSYKEAIGSFSVIYDLNGEPFSGPKHTSKLPYKNVKIELRFPDEFLESVSGYTAPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGVHMAL 149
               SCOP domains d1j4ud_ D: Artocarpin                                                                                                                                 SCOP domains
               CATH domains -1j4uD00 D:2-149  [code=2.100.10.30, no name defined]                                                                                                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee....eeee.....eeeeeeeee...eeeeeeeeee..eeee..........eeeeee.......eeeeeeeeee........eeeeeeeeee....eeeee.....eeeeeeeee.eeeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1j4u D   1 aSQTITVGSWGGPGGNGWDEGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVKIELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGIHMSL 149
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140         
                            1-AYA

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: beta-Prism I (50)

Superfamily: Mannose-binding lectins (42)

Family: Mannose-binding lectins (32)

Protein domain: Artocarpin (5)

Jackfruit (Artocarpus heterophyllus) [TaxId: 3489] (5)

1a	d1j4ua_	A:
1b	d1j4ub_	B:
1c	d1j4uc_	C:
1d	d1j4ud_	D:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Aligned Prism (39)

Topology: Vitelline Membrane Outer Layer Protein I, subunit A (39)

Homologous Superfamily: [code=2.100.10.30, no name defined] (33)

Artocarpus integer. Organism_taxid: 3490. (13)

1a	1j4uA00	A:2-149
1b	1j4uB00	B:2-149
1c	1j4uC00	C:2-149
1d	1j4uD00	D:2-149

(no "Pfam Domain" information available for 1J4U)

Asymmetric/Biological Unit(hide GO term definitions)

(no "Gene Ontology" information available for 1J4U)

Asymmetric/Biological Unit
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	Cis Peptide Bonds
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		Phe C:71 - Pro C:72	[ RasMol ]
		Phe D:71 - Pro D:72	[ RasMol ]

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1j4s	1J4S CONTAINS THE SAME PROTEIN (FORM 1)
1j4t	1J4T CONTAINS THE SAME PROTEIN (FORM 2)
1jac	1JAC IS THE CRYSTAL STRUCTURE OF JACALIN WHOSE FOLD IS SAME AS THAT OF ARTOCARPIN

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 8)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

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