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(-) Description

Title :  STRUCTURE OF ARTOCARPIN: A LECTIN WITH MANNOSE SPECIFICITY (FORM 2)
 
Authors :  J. V. Pratap, A. A. Jeyaprakash, P. G. Rani, K. Sekar, A. Surolia, M. Vijayan
Date :  30 Oct 01  (Deposition) - 27 Mar 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  All Beta, Greek Key Motif, Beta Prism I Fold, Plant Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. V. Pratap, A. A. Jeyaprakash, P. G. Rani, K. Sekar, A. Surolia, M. Vijayan
Crystal Structures Of Artocarpin, A Moraceae Lectin With Mannose Specificity, And Its Complex With Methyl-Alpha-D-Mannose: Implications To The Generation Of Carbohydrate Specificity.
J. Mol. Biol. V. 317 237 2002
PubMed-ID: 11902840  |  Reference-DOI: 10.1006/JMBI.2001.5432
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ARTOCARPIN
    Chains: A, B, C, D, E, F, G, H
    Organism Scientific: ARTOCARPUS INTEGER
    Organism Taxid: 3490
    Other Details: SEEDS

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): ABCD    
Biological Unit 2 (1x):     EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1AYA8Mod. Amino AcidN-ACETYLALANINE
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1AYA4Mod. Amino AcidN-ACETYLALANINE
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1AYA4Mod. Amino AcidN-ACETYLALANINE

(-) Sites  (0, 0)

(no "Site" information available for 1J4T)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1J4T)

(-) Cis Peptide Bonds  (10, 10)

Asymmetric Unit
No.Residues
1Phe A:71 -Pro A:72
2Phe B:71 -Pro B:72
3Phe C:71 -Pro C:72
4Phe D:71 -Pro D:72
5Phe E:71 -Pro E:72
6Phe F:71 -Pro F:72
7Gly F:110 -Pro F:111
8Phe G:71 -Pro G:72
9Gly G:110 -Pro G:111
10Phe H:71 -Pro H:72

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1J4T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1J4T)

(-) Exons   (0, 0)

(no "Exon" information available for 1J4T)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:149
 aligned with Q7M1T4_ARTIN | Q7M1T4 from UniProtKB/TrEMBL  Length:149

    Alignment length:149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140         
         Q7M1T4_ARTIN     1 ASQTITVGPWGGPGGNGWDDGSYTGIRQIELSYKEAIGSFSVIYDLNGEPFSGPKHTSKLPYKNVKIELRFPDEFLESVSGYTAPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGVHMAL 149
               SCOP domains d1j4ta_ A: Artocarpin                                                                                                                                 SCOP domains
               CATH domains -1j4tA00 A:2-149  [code=2.100.10.30, no name defined]                                                                                                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee....eeee.....eeeeeeeee...eeeeeeeeee..eeee..........eeeeee.......eeeeeeeeeee....eeeeeeeeeeeee....eeeee.....eeeeeeeee.eeeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1j4t A   1 aSQTITVGSWGGPGGNGWDEGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVKIELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGIHMSL 149
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140         
                            |                                                                                                                                                    
                            1-AYA                                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:149
 aligned with Q7M1T4_ARTIN | Q7M1T4 from UniProtKB/TrEMBL  Length:149

    Alignment length:149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140         
         Q7M1T4_ARTIN     1 ASQTITVGPWGGPGGNGWDDGSYTGIRQIELSYKEAIGSFSVIYDLNGEPFSGPKHTSKLPYKNVKIELRFPDEFLESVSGYTAPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGVHMAL 149
               SCOP domains d1j4tb_ B: Artocarpin                                                                                                                                 SCOP domains
               CATH domains -1j4tB00 B:2-149  [code=2.100.10.30, no name defined]                                                                                                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee....eeee........eeeeee...eeeeeeeeee..eeee..........eeeeee.......eeeeeeeeeee....eeeeeeeeeeeee....eeeeee....eeeeeeeee.eeeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1j4t B   1 aSQTITVGSWGGPGGNGWDEGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVKIELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGIHMSL 149
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140         
                            1-AYA                                                                                                                                                


Chain C from PDB  Type:PROTEIN  Length:149
 aligned with Q7M1T4_ARTIN | Q7M1T4 from UniProtKB/TrEMBL  Length:149

    Alignment length:149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140         
         Q7M1T4_ARTIN     1 ASQTITVGPWGGPGGNGWDDGSYTGIRQIELSYKEAIGSFSVIYDLNGEPFSGPKHTSKLPYKNVKIELRFPDEFLESVSGYTAPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGVHMAL 149
               SCOP domains d1j4tc_ C: Artocarpin                                                                                                                                 SCOP domains
               CATH domains -1j4tC00 C:2-149  [code=2.100.10.30, no name defined]                                                                                                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee....eeee.....eeeeeeeee...eeeeeeeeee..eeee..........eeeeee.......eeeeeeeeeee....eeeeeeeeeeeee....eeeeee....eeeeeeeee.eeeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1j4t C   1 aSQTITVGSWGGPGGNGWDEGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVKIELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGIHMSL 149
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140         
                            1-AYA                                                                                                                                                


Chain D from PDB  Type:PROTEIN  Length:149
 aligned with Q7M1T4_ARTIN | Q7M1T4 from UniProtKB/TrEMBL  Length:149

    Alignment length:149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140         
         Q7M1T4_ARTIN     1 ASQTITVGPWGGPGGNGWDDGSYTGIRQIELSYKEAIGSFSVIYDLNGEPFSGPKHTSKLPYKNVKIELRFPDEFLESVSGYTAPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGVHMAL 149
               SCOP domains d1j4td_ D: Artocarpin                                                                                                                                 SCOP domains
               CATH domains -1j4tD00 D:2-149  [code=2.100.10.30, no name defined]                                                                                                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee....eeee........eeeeee...eeeeeeeee....eee..........eeeeee.........eeeeeee..........eeeeeeee.....ee........eeeeeeeee.eeeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1j4t D   1 aSQTITVGSWGGPGGNGWDEGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVKIELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGIHMSL 149
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140         
                            1-AYA                                                                                                                                                


Chain E from PDB  Type:PROTEIN  Length:149
 aligned with Q7M1T4_ARTIN | Q7M1T4 from UniProtKB/TrEMBL  Length:149

    Alignment length:149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140         
         Q7M1T4_ARTIN     1 ASQTITVGPWGGPGGNGWDDGSYTGIRQIELSYKEAIGSFSVIYDLNGEPFSGPKHTSKLPYKNVKIELRFPDEFLESVSGYTAPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGVHMAL 149
               SCOP domains d1j4te_ E: Artocarpin                                                                                                                                 SCOP domains
               CATH domains -1j4tE00 E:2-149  [code=2.100.10.30, no name defined]                                                                                                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee....eeee.....eeeeeeeee...eeeeeeeeee..eeee..........eeeeee.......eeeee..eeeehhhheeeeee..eeeee....eeeee........eeeeee.eeeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1j4t E   1 aSQTITVGSWGGPGGNGWDEGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVKIELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGIHMSL 149
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140         
                            1-AYA                                                                                                                                                


Chain F from PDB  Type:PROTEIN  Length:149
 aligned with Q7M1T4_ARTIN | Q7M1T4 from UniProtKB/TrEMBL  Length:149

    Alignment length:149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140         
         Q7M1T4_ARTIN     1 ASQTITVGPWGGPGGNGWDDGSYTGIRQIELSYKEAIGSFSVIYDLNGEPFSGPKHTSKLPYKNVKIELRFPDEFLESVSGYTAPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGVHMAL 149
               SCOP domains d1j4tf_ F: Artocarpin                                                                                                                                 SCOP domains
               CATH domains -1j4tF00 F:2-149  [code=2.100.10.30, no name defined]                                                                                                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee....eeeeeee..eeeeeeeee...eeeeeeeeee..eeee..........eeeeee.......eeeeeeeeeee....eeeeeeeeeeeee....eeeee.....eeeeeeeee.eeeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1j4t F   1 aSQTITVGSWGGPGGNGWDEGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVKIELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGIHMSL 149
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140         
                            1-AYA                                                                                                                                                


Chain G from PDB  Type:PROTEIN  Length:149
 aligned with Q7M1T4_ARTIN | Q7M1T4 from UniProtKB/TrEMBL  Length:149

    Alignment length:149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140         
         Q7M1T4_ARTIN     1 ASQTITVGPWGGPGGNGWDDGSYTGIRQIELSYKEAIGSFSVIYDLNGEPFSGPKHTSKLPYKNVKIELRFPDEFLESVSGYTAPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGVHMAL 149
               SCOP domains d1j4tg_ G: Artocarpin                                                                                                                                 SCOP domains
               CATH domains -1j4tG00 G:2-149  [code=2.100.10.30, no name defined]                                                                                                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee....eeee........ee..ee........eeeee..eeee..........ee..ee.......eeeeeeeeee........eeeeeeeeee....eeeeee.......eeeeee.eeeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1j4t G   1 aSQTITVGSWGGPGGNGWDEGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVKIELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGIHMSL 149
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140         
                            1-AYA                                                                                                                                                


Chain H from PDB  Type:PROTEIN  Length:149
 aligned with Q7M1T4_ARTIN | Q7M1T4 from UniProtKB/TrEMBL  Length:149

    Alignment length:149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140         
         Q7M1T4_ARTIN     1 ASQTITVGPWGGPGGNGWDDGSYTGIRQIELSYKEAIGSFSVIYDLNGEPFSGPKHTSKLPYKNVKIELRFPDEFLESVSGYTAPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGVHMAL 149
               SCOP domains d1j4th_ H: Artocarpin                                                                                                                                 SCOP domains
               CATH domains -1j4tH00 H:2-149  [code=2.100.10.30, no name defined]                                                                                                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee....eeee.....eeeeeeeee...eeeeeeeeee..eeee..........ee..ee.......eeeeeeeeeeehhhheeeeeeeeeeeee....ee........eeeeeeeee.eeeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1j4t H   1 aSQTITVGSWGGPGGNGWDEGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVKIELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGIHMSL 149
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140         
                            1-AYA
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1J4T)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1J4T)

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  1j4t
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q7M1T4_ARTIN | Q7M1T4: 1j4s 1j4u 1vbo 1vbp 4akd

(-) Related Entries Specified in the PDB File

1j4s 1J4S CONTAINS THE SAME PROTEIN (FORM 1)
1j4u 1J4U CONTAINS THE SAME PROTEIN (COMPLEX)
1jac 1JAC IS THE CRYSTAL STRUCTURE OF JACALIN WHOSE FOLD IS SAME AS THAT OF ARTOCARPIN