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(-) Description

Title :  STRUCTURE OF GLIDING PROTEIN-MGLB FROM THERMUS THERMOPHILUS HB8
 
Authors :  N. K. Lokanath, N. Kunishima, M. Miyano, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  18 Feb 03  (Deposition) - 13 Apr 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  A (2x),B (2x),C (2x),D (2x)
Keywords :  Gliding, Motility, Mglb, Mutational Function, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. K. Lokanath, N. Kunishima, M. Miyano
Structure Of Gliding Protein-Mglb From Thermus Thermophilus Hb8
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GIDING PROTEIN-MGLB
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET11A
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): ABCD
Biological Unit 2 (2x): A (2x)B (2x)C (2x)D (2x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric Unit (3, 5)
No.NameCountTypeFull Name
1MES2Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2MG1Ligand/IonMAGNESIUM ION
3SO42Ligand/IonSULFATE ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1MES2Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2MG-1Ligand/IonMAGNESIUM ION
3SO42Ligand/IonSULFATE ION
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1MES2Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2MG-1Ligand/IonMAGNESIUM ION
3SO42Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH D:1357 , HOH D:1358 , HOH D:1418 , HOH D:1419BINDING SITE FOR RESIDUE MG D 1305
2AC2SOFTWARELEU A:48 , TRP A:49 , HOH A:1336 , HOH A:1449 , HOH A:1473BINDING SITE FOR RESIDUE SO4 A 1306
3AC3SOFTWARELYS B:75 , ARG D:37 , HIS D:102 , HOH D:1321 , HOH D:1407BINDING SITE FOR RESIDUE SO4 D 1307
4AC4SOFTWAREARG A:25 , GLU A:26 , GLY A:28 , TRP A:49 , PRO A:114 , LYS A:117 , HOH A:1308 , HOH A:1380 , HOH A:1392 , HOH A:1473 , ARG C:124BINDING SITE FOR RESIDUE MES C 1303
5AC5SOFTWAREARG A:124 , HOH A:1397 , HOH A:1443 , HOH A:1460 , HOH A:1463 , ARG B:25 , GLU B:26 , GLY B:28 , TRP B:49 , PRO B:114 , HOH B:165BINDING SITE FOR RESIDUE MES A 1304

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1J3W)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1J3W)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1J3W)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1J3W)

(-) Exons   (0, 0)

(no "Exon" information available for 1J3W)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:134
 aligned with Q9X9L0_THETH | Q9X9L0 from UniProtKB/TrEMBL  Length:163

    Alignment length:134
                                    15        25        35        45        55        65        75        85        95       105       115       125       135    
         Q9X9L0_THETH     6 LVLYGAPYERAVEVLEETLRETGARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVAGNAAATQALAKLLGEARFQEEVHQGERMGLYVDEAGEHALLVLVFDETAPLGKVKLHGKRAAEALARIAEEALAN 139
               SCOP domains d1j3wa_ A: Giding protein MglB                                                                                                         SCOP domains
               CATH domains 1j3wA00 A:6-139 Dynein light chain 2a, cytoplasmic                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhh..eeeeee....eeeeee........hhhhhhhhhhhhhhhhhhhhhhh......eeeee....eeeeee....eeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1j3w A   6 LVLYGAPYERAVEVLEETLRETGARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVAGNAAATQALAKLLGEARFQEEVHQGERMGLYVDEAGEHALLVLVFDETAPLGKVKLHGKRASEALARIAEEALAN 139
                                    15        25        35        45        55        65        75        85        95       105       115       125       135    


Chain B from PDB  Type:PROTEIN  Length:135
 aligned with Q9X9L0_THETH | Q9X9L0 from UniProtKB/TrEMBL  Length:163

    Alignment length:135
                                    11        21        31        41        51        61        71        81        91       101       111       121       131     
         Q9X9L0_THETH     2 VEPSLVLYGAPYERAVEVLEETLRETGARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVAGNAAATQALAKLLGEARFQEEVHQGERMGLYVDEAGEHALLVLVFDETAPLGKVKLHGKRAAEALARIAEEA 136
               SCOP domains d1j3wb_ B: Giding protein MglB                                                                                                          SCOP domains
               CATH domains 1j3wB00 B:2-136 Dynein light chain 2a, cytoplasmic                                                                                      CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhh..eeeeee....eeeeee........hhhhhhhhhhhhhhhhhhhhhhh......eeeee....eeeeee....eeeeeee....hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1j3w B   2 VEPSLVLYGAPYERAVEVLEETLRETGARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVAGNAAATQALAKLLGEARFQEEVHQGERMGLYVDEAGEHALLVLVFDETAPLGKVKLHGKRASEALARIAEEA 136
                                    11        21        31        41        51        61        71        81        91       101       111       121       131     


Chain C from PDB  Type:PROTEIN  Length:133
 aligned with Q9X9L0_THETH | Q9X9L0 from UniProtKB/TrEMBL  Length:163

    Alignment length:133
                                    15        25        35        45        55        65        75        85        95       105       115       125       135   
         Q9X9L0_THETH     6 LVLYGAPYERAVEVLEETLRETGARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVAGNAAATQALAKLLGEARFQEEVHQGERMGLYVDEAGEHALLVLVFDETAPLGKVKLHGKRAAEALARIAEEALA 138
               SCOP domains d1j3wc_ C: Giding protein MglB                                                                                                        SCOP domains
               CATH domains 1j3wC00 C:6-138 Dynein light chain 2a, cytoplasmic                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhh..eeeeee....eeeeee........hhhhhhhhhhhhhhhhhhhhhhh......eeeee....eeeeee....eeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1j3w C   6 LVLYGAPYERAVEVLEETLRETGARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVAGNAAATQALAKLLGEARFQEEVHQGERMGLYVDEAGEHALLVLVFDETAPLGKVKLHGKRASEALARIAEEALA 138
                                    15        25        35        45        55        65        75        85        95       105       115       125       135   


Chain D from PDB  Type:PROTEIN  Length:133
 aligned with Q9X9L0_THETH | Q9X9L0 from UniProtKB/TrEMBL  Length:163

    Alignment length:133
                                    15        25        35        45        55        65        75        85        95       105       115       125       135   
         Q9X9L0_THETH     6 LVLYGAPYERAVEVLEETLRETGARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVAGNAAATQALAKLLGEARFQEEVHQGERMGLYVDEAGEHALLVLVFDETAPLGKVKLHGKRAAEALARIAEEALA 138
               SCOP domains d1j3wd_ D: Giding protein MglB                                                                                                        SCOP domains
               CATH domains 1j3wD00 D:6-138 Dynein light chain 2a, cytoplasmic                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhh..eeeeee....eeeeee........hhhhhhhhhhhhhhhhhhhhhhh......eeeee....eeeeee....eeeeeee....hhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1j3w D   6 LVLYGAPYERAVEVLEETLRETGARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVAGNAAATQALAKLLGEARFQEEVHQGERMGLYVDEAGEHALLVLVFDETAPLGKVKLHGKRASEALARIAEEALA 138
                                    15        25        35        45        55        65        75        85        95       105       115       125       135
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1J3W)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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