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(-) Description

Title :  RAN-RCC1-SO4 COMPLEX
 
Authors :  L. Renault, J. Kuhlmann, A. Henkel, A. Wittinghofer
Date :  11 Feb 01  (Deposition) - 02 May 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.76
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  A,B,C,D  (1x)
Keywords :  Beta-Propeller, G Fold Or Gtpase Fold, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  L. Renault, J. Kuhlmann, A. Henkel, A. Wittinghofer
Structural Basis For Guanine Nucleotide Exchange On Ran By The Regulator Of Chromosome Condensation (Rcc1).
Cell(Cambridge, Mass. ) V. 105 245 2001
PubMed-ID: 11336674  |  Reference-DOI: 10.1016/S0092-8674(01)00315-4
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GTP-BINDING NUCLEAR PROTEIN RAN
    ChainsA, C
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21
    Expression System PlasmidPGEX-2T
    Expression System StrainBL21
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymRAN
 
Molecule 2 - REGULATOR OF CHROMOSOME CONDENSATION 1
    ChainsB, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPTAC
    Expression System StrainCK600K
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentPROTEIN TRUNCATED FROM THE N-TERMINAL RESIDUES 1 TO 19
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymRCC1

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)AB  
Biological Unit 2 (1x)  CD
Biological Unit 3 (1x)ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:18 , GLY A:19 , GLY A:20 , THR A:21 , GLY A:22 , LYS A:23 , THR A:24 , HOH A:1284 , HOH A:1286BINDING SITE FOR RESIDUE SO4 A 1250
2AC2SOFTWAREARG B:217 , GLY C:20 , THR C:21 , GLY C:22 , LYS C:23 , THR C:24 , HOH C:2289 , HOH C:2301 , HOH C:2302BINDING SITE FOR RESIDUE SO4 C 2250

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1I2M)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1I2M)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 2)

Asymmetric Unit (1, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_051900R95IRAN_HUMANPolymorphism11546488A/CR95I

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_051900R95IRAN_HUMANPolymorphism11546488AR95I

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_051900R95IRAN_HUMANPolymorphism11546488CR95I

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (1, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_051900R95IRAN_HUMANPolymorphism11546488A/CR95I

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (3, 24)

Asymmetric Unit (3, 24)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RCC1_3PS50012 Regulator of chromosome condensation (RCC1) repeat profile.RCC1_HUMAN35-85
 
86-137
 
138-190
 
191-258
 
259-312
 
313-363
 
364-417
 
  14B:35-85
D:35-85
B:86-137
D:86-137
B:138-190
D:138-190
B:191-258
D:191-258
B:259-312
D:259-312
B:313-363
D:313-363
B:364-417
D:364-417
2RCC1_1PS00625 Regulator of chromosome condensation (RCC1) signature 1.RCC1_HUMAN92-103
 
  2B:92-103
D:92-103
3RCC1_2PS00626 Regulator of chromosome condensation (RCC1) signature 2.RCC1_HUMAN124-134
 
177-187
 
299-309
 
404-414
 
  8B:124-134
D:124-134
B:177-187
D:177-187
B:299-309
D:299-309
B:404-414
D:404-414
Biological Unit 1 (3, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RCC1_3PS50012 Regulator of chromosome condensation (RCC1) repeat profile.RCC1_HUMAN35-85
 
86-137
 
138-190
 
191-258
 
259-312
 
313-363
 
364-417
 
  7B:35-85
-
B:86-137
-
B:138-190
-
B:191-258
-
B:259-312
-
B:313-363
-
B:364-417
-
2RCC1_1PS00625 Regulator of chromosome condensation (RCC1) signature 1.RCC1_HUMAN92-103
 
  1B:92-103
-
3RCC1_2PS00626 Regulator of chromosome condensation (RCC1) signature 2.RCC1_HUMAN124-134
 
177-187
 
299-309
 
404-414
 
  4B:124-134
-
B:177-187
-
B:299-309
-
B:404-414
-
Biological Unit 2 (3, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RCC1_3PS50012 Regulator of chromosome condensation (RCC1) repeat profile.RCC1_HUMAN35-85
 
86-137
 
138-190
 
191-258
 
259-312
 
313-363
 
364-417
 
  7-
D:35-85
-
D:86-137
-
D:138-190
-
D:191-258
-
D:259-312
-
D:313-363
-
D:364-417
2RCC1_1PS00625 Regulator of chromosome condensation (RCC1) signature 1.RCC1_HUMAN92-103
 
  1-
D:92-103
3RCC1_2PS00626 Regulator of chromosome condensation (RCC1) signature 2.RCC1_HUMAN124-134
 
177-187
 
299-309
 
404-414
 
  4-
D:124-134
-
D:177-187
-
D:299-309
-
D:404-414
Biological Unit 3 (3, 24)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RCC1_3PS50012 Regulator of chromosome condensation (RCC1) repeat profile.RCC1_HUMAN35-85
 
86-137
 
138-190
 
191-258
 
259-312
 
313-363
 
364-417
 
  14B:35-85
D:35-85
B:86-137
D:86-137
B:138-190
D:138-190
B:191-258
D:191-258
B:259-312
D:259-312
B:313-363
D:313-363
B:364-417
D:364-417
2RCC1_1PS00625 Regulator of chromosome condensation (RCC1) signature 1.RCC1_HUMAN92-103
 
  2B:92-103
D:92-103
3RCC1_2PS00626 Regulator of chromosome condensation (RCC1) signature 2.RCC1_HUMAN124-134
 
177-187
 
299-309
 
404-414
 
  8B:124-134
D:124-134
B:177-187
D:177-187
B:299-309
D:299-309
B:404-414
D:404-414

(-) Exons   (14, 28)

Asymmetric Unit (14, 28)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2aENST000003923692aENSE00001511608chr12:131356783-131357174392RAN_HUMAN1-32322A:8-31
C:8-31
24
24
1.2dENST000003923692dENSE00000903701chr12:131357381-13135746585RAN_HUMAN33-61292A:37-61
C:38-61
25
24
1.3ENST000003923693ENSE00000903703chr12:131357548-131357673126RAN_HUMAN61-103432A:61-103
C:61-103
43
43
1.5bENST000003923695bENSE00000903705chr12:131359091-131359278188RAN_HUMAN103-165632A:103-165
C:103-165
63
63
1.6cENST000003923696cENSE00000903707chr12:131360157-131360327171RAN_HUMAN166-222572A:166-177
C:166-177
12
12
1.7cENST000003923697cENSE00001511600chr12:131360427-131360826400RAN_HUMAN223-236140--

2.1aENST000003989581aENSE00001461695chr1:28832496-28832596101RCC1_HUMAN-00--
2.2ENST000003989582ENSE00002156964chr1:28834640-2883467233RCC1_HUMAN-00--
2.3bENST000003989583bENSE00001461694chr1:28835342-2883541776RCC1_HUMAN-00--
2.8bENST000003989588bENSE00001684969chr1:28856370-2885645182RCC1_HUMAN1-25252B:24-25
D:24-25
2
2
2.10aENST0000039895810aENSE00001273582chr1:28858315-28858502188RCC1_HUMAN25-87632B:25-87
D:25-87
63
63
2.11ENST0000039895811ENSE00001273575chr1:28858683-28858862180RCC1_HUMAN88-147602B:88-147
D:88-147
60
60
2.13ENST0000039895813ENSE00001273568chr1:28861562-2886165897RCC1_HUMAN148-180332B:148-180
D:148-180
33
33
2.14ENST0000039895814ENSE00001273562chr1:28861770-28861892123RCC1_HUMAN180-221422B:180-221
D:180-221
42
42
2.16dENST0000039895816dENSE00002159912chr1:28862383-28862538156RCC1_HUMAN221-273532B:221-273 (gaps)
D:221-273 (gaps)
53
53
2.17cENST0000039895817cENSE00001273554chr1:28862774-28862893120RCC1_HUMAN273-313412B:273-313
D:273-313
41
41
2.18bENST0000039895818bENSE00001273551chr1:28863259-28863411153RCC1_HUMAN313-364522B:313-364
D:313-364
52
52
2.19eENST0000039895819eENSE00001378938chr1:28864344-288656071264RCC1_HUMAN364-421582B:364-417
D:364-419
54
56

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:165
 aligned with RAN_HUMAN | P62826 from UniProtKB/Swiss-Prot  Length:216

    Alignment length:170
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177
            RAN_HUMAN     8 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 177
               SCOP domains d1i2ma_ A: Ran                                                                                                                                                             SCOP domains
               CATH domains 1i2mA00 A:8-177 P-loop c     ontaining nucleotide triphosphate hydrolases                                                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee....hhhhhhhh..-----..eeee..eeeeeeee......eeeeeee..hhhhhh.hhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhhhh...eeeeee............hhhhhh....eeeee........hhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------I---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2a  PDB: A:8-31   Exon 1.2d  PDB: A:37-61      -----------------------------------------Exon 1.5b  PDB: A:103-165 UniProt: 103-165                     Exon 1.6c    Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------Exon 1.3  PDB: A:61-103 UniProt: 61-103    -------------------------------------------------------------------------- Transcript 1 (2)
                 1i2m A   8 QVQFKLVLVGDGGTGKTTFVKRHL-----KKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 177
                                    17        27   |    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177
                                                  31    37                                                                                                                                            

Chain B from PDB  Type:PROTEIN  Length:388
 aligned with RCC1_HUMAN | P18754 from UniProtKB/Swiss-Prot  Length:421

    Alignment length:394
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413    
           RCC1_HUMAN    24 KVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKD 417
               SCOP domains d1i2mb_ B: Regulator of chromosome condensation RCC1                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1i2mB00 B:24-417 Regulator of chromosome condensation RCC1/ beta-lactamase inhibitor protein-II, BLIP-II                                                                                                                                                                                                                                                                                                   CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeeeee.............eeeeeeee.....eeeeee...eeeeee....eeeee..............hhhhh.ee......eeeeee...eeeeee....eeeee.eee..eeee.......eeeeeee.....eeeeee...eeeeee....eeeee..........hhhhh..hhhhhhhhhhh.ee....------...eeeeee...eeeeee....eeeeee............eeeeeee.hhhh.....eeeeee...eeeeee....eeeee.hhhhh.........eeeeee......eeeeee...eeeeee....eeeee..............eeeeee..hhhhh..eeeeeee...eeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------RCC1_3  PDB: B:35-85 UniProt: 35-85                RCC1_3  PDB: B:86-137 UniProt: 86-137               RCC1_3  PDB: B:138-190 UniProt: 138-190              RCC1_3  PDB: B:191-258 UniProt: 191-258                             RCC1_3  PDB: B:259-312 UniProt: 259-312               RCC1_3  PDB: B:313-363 UniProt: 313-363            RCC1_3  PDB: B:364-417 UniProt: 364-417                PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------RCC1_1      --------------------RCC1_2     ------------------------------------------RCC1_2     ---------------------------------------------------------------------------------------------------------------RCC1_2     ----------------------------------------------------------------------------------------------RCC1_2     --- PROSITE (2)
           Transcript 2 (1) -Exon 2.10a  PDB: B:25-87 UniProt: 25-87                        Exon 2.11  PDB: B:88-147 UniProt: 88-147                    Exon 2.13  PDB: B:148-180        ----------------------------------------Exon 2.16d  PDB: B:221-273 (gaps) UniProt: 221-273   ---------------------------------------Exon 2.18b  PDB: B:313-364 UniProt: 313-364         ----------------------------------------------------- Transcript 2 (1)
           Transcript 2 (2) 2.----------------------------------------------------------------------------------------------------------------------------------------------------------Exon 2.14  PDB: B:180-221 UniProt: 180-221---------------------------------------------------Exon 2.17c  PDB: B:273-313               --------------------------------------------------Exon 2.19e  PDB: B:364-417 UniProt: 364-421            Transcript 2 (2)
                 1i2m B  24 KVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLK------HVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKD 417
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223        |-     | 243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413    
                                                                                                                                                                                                                                          232    239                                                                                                                                                                                  

Chain C from PDB  Type:PROTEIN  Length:164
 aligned with RAN_HUMAN | P62826 from UniProtKB/Swiss-Prot  Length:216

    Alignment length:170
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177
            RAN_HUMAN     8 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 177
               SCOP domains d1i2mc_ C: Ran                                                                                                                                                             SCOP domains
               CATH domains 1i2mC00 C:8-177 P-loop c      ontaining nucleotide triphosphate hydrolases                                                                                                 CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee....hhhhhhhh..------..........eeeee......eeeeeee..hhhhhh...hhhhhh..eeeeeee..hhhhhhhhhhhhhhhhhhh....eeeeee............hhhhhhh...eeeee.hhhh...hhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------I---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2a  PDB: C:8-31   Exon 1.2d  PDB: C:38-61      -----------------------------------------Exon 1.5b  PDB: C:103-165 UniProt: 103-165                     Exon 1.6c    Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------Exon 1.3  PDB: C:61-103 UniProt: 61-103    -------------------------------------------------------------------------- Transcript 1 (2)
                 1i2m C   8 QVQFKLVLVGDGGTGKTTFVKRHL------KYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 177
                                    17        27   |     -|       47        57        67        77        87        97       107       117       127       137       147       157       167       177
                                                  31     38                                                                                                                                           

Chain D from PDB  Type:PROTEIN  Length:390
 aligned with RCC1_HUMAN | P18754 from UniProtKB/Swiss-Prot  Length:421

    Alignment length:396
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413      
           RCC1_HUMAN    24 KVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKE 419
               SCOP domains d1i2md_ D: Regulator of chromosome condensation RCC1                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1i2mD00 D:24-419 Regulator of chromosome condensation RCC1/ beta-lactamase inhibitor protein-II, BLIP-II                                                                                                                                                                                                                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............eeeeeee.............eeeeeee......eeeeee...eeeeee....eeeee..............hhhhh.ee......eeeeee...eeeeee....eeeee.eee..eeee.......eeeeee......eeeeee...eeeeee....eeeee......................hhhhhh.ee....------...eeeeee...eeeeee....eeeee..............eeeeee.hhhh.....eeeeee...eeeeee....eeeee.hhhhh.........eeeeee......eeeeee...eeeeee....eeeee..............eeeeee..hhhhh.eeeeeeee...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) -----------RCC1_3  PDB: D:35-85 UniProt: 35-85                RCC1_3  PDB: D:86-137 UniProt: 86-137               RCC1_3  PDB: D:138-190 UniProt: 138-190              RCC1_3  PDB: D:191-258 UniProt: 191-258                             RCC1_3  PDB: D:259-312 UniProt: 259-312               RCC1_3  PDB: D:313-363 UniProt: 313-363            RCC1_3  PDB: D:364-417 UniProt: 364-417               -- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------RCC1_1      --------------------RCC1_2     ------------------------------------------RCC1_2     ---------------------------------------------------------------------------------------------------------------RCC1_2     ----------------------------------------------------------------------------------------------RCC1_2     ----- PROSITE (2)
           Transcript 2 (1) -Exon 2.10a  PDB: D:25-87 UniProt: 25-87                        Exon 2.11  PDB: D:88-147 UniProt: 88-147                    Exon 2.13  PDB: D:148-180        ----------------------------------------Exon 2.16d  PDB: D:221-273 (gaps) UniProt: 221-273   ---------------------------------------Exon 2.18b  PDB: D:313-364 UniProt: 313-364         ------------------------------------------------------- Transcript 2 (1)
           Transcript 2 (2) 2.----------------------------------------------------------------------------------------------------------------------------------------------------------Exon 2.14  PDB: D:180-221 UniProt: 180-221---------------------------------------------------Exon 2.17c  PDB: D:273-313               --------------------------------------------------Exon 2.19e  PDB: D:364-419 UniProt: 364-421 [INCOMPLETE] Transcript 2 (2)
                 1i2m D  24 KVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLK------HVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKE 419
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223        |-     | 243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413      
                                                                                                                                                                                                                                          232    239                                                                                                                                                                                    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric Unit

(-) CATH Domains  (2, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1I2M)

(-) Gene Ontology  (79, 88)

Asymmetric Unit(hide GO term definitions)
Chain A,C   (RAN_HUMAN | P62826)
molecular function
    GO:0019003    GDP binding    Interacting selectively and non-covalently with GDP, guanosine 5'-diphosphate.
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0003924    GTPase activity    Catalysis of the reaction: GTP + H2O = GDP + phosphate.
    GO:0050681    androgen receptor binding    Interacting selectively and non-covalently with an androgen receptor.
    GO:0003682    chromatin binding    Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
    GO:0045505    dynein intermediate chain binding    Interacting selectively and non-covalently with an intermediate chain of the dynein complex.
    GO:0061676    importin-alpha family protein binding    Interacting selectively and non-covalently with any member of the importin-alpha family.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0070883    pre-miRNA binding    Interacting selectively and non-covalently with a precursor microRNA (pre-miRNA) transcript, a stem-loop-containing precursor of microRNA.
    GO:0090631    pre-miRNA transporter activity    Enables the directed movement of pre-miRNAs between the nucleus and the cytoplasm of a cell.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0032403    protein complex binding    Interacting selectively and non-covalently with any protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0019904    protein domain specific binding    Interacting selectively and non-covalently with a specific domain of a protein.
    GO:0003713    transcription coactivator activity    Interacting selectively and non-covalently with a activating transcription factor and also with the basal transcription machinery in order to increase the frequency, rate or extent of transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between activating transcription factors and the basal transcription machinery.
biological process
    GO:0006259    DNA metabolic process    Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
    GO:0030036    actin cytoskeleton organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins.
    GO:0030521    androgen receptor signaling pathway    Any series of molecular signals generated as a consequence of an androgen binding to its receptor.
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
    GO:0034629    cellular protein complex localization    A protein complex localization process that takes place at the cellular level; as a result, a protein complex is transported to, or maintained in, a specific location within a cell.
    GO:0034613    cellular protein localization    Any process in which a protein is transported to, and/or maintained in, a specific location at the level of a cell. Localization at the cellular level encompasses movement within the cell, from within the cell to the cell surface, or from one location to another at the surface of a cell.
    GO:0071389    cellular response to mineralocorticoid stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mineralocorticoid stimulus. Mineralocorticoids are hormonal C21 corticosteroids synthesized from cholesterol and characterized by their similarity to aldosterone. Mineralocorticoids act primarily on water and electrolyte balance.
    GO:0031047    gene silencing by RNA    Any process in which RNA molecules inactivate expression of target genes.
    GO:0021766    hippocampus development    The progression of the hippocampus over time from its initial formation until its mature state.
    GO:0006886    intracellular protein transport    The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
    GO:0075733    intracellular transport of virus    The directed movement of a virus, or part of a virus, within the host cell.
    GO:0007052    mitotic spindle organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the microtubule spindle during a mitotic cell cycle.
    GO:0006913    nucleocytoplasmic transport    The directed movement of molecules between the nucleus and the cytoplasm.
    GO:0032092    positive regulation of protein binding    Any process that activates or increases the frequency, rate or extent of protein binding.
    GO:0045893    positive regulation of transcription, DNA-templated    Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0035281    pre-miRNA export from nucleus    Transport of pre-microRNAs (pre-miRNAs) from the nucleus to the cytoplasm. Pre-miRNAs are a ~60-70 nucleotide stem loop intermediate in miRNA production, produced by the nuclear cleavage of a primary miRNA (pri-mRNA) transcript. Pre-miRNAs are transported from the nucleus to the cytoplasm where further cleavage occurs to produce a mature miRNA product.
    GO:0006611    protein export from nucleus    The directed movement of a protein from the nucleus into the cytoplasm.
    GO:0006606    protein import into nucleus    The directed movement of a protein from the cytoplasm to the nucleus.
    GO:0000060    protein import into nucleus, translocation    A protein transport process that contributes to protein import into the nucleus, and that results in the vectorial transfer of a cargo-carrier protein complex through the nuclear pore complex from the cytoplasmic side to the nucleoplasmic side of the nuclear envelope.
    GO:1902570    protein localization to nucleolus    A process in which a protein is transported to, or maintained in, a location within a nucleolus.
    GO:0015031    protein transport    The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0043393    regulation of protein binding    Any process that modulates the frequency, rate or extent of protein binding.
    GO:0014070    response to organic cyclic compound    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic compound stimulus.
    GO:0000055    ribosomal large subunit export from nucleus    The directed movement of a ribosomal large subunit from the nucleus into the cytoplasm.
    GO:0000056    ribosomal small subunit export from nucleus    The directed movement of a ribosomal small subunit from the nucleus into the cytoplasm.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0007264    small GTPase mediated signal transduction    Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
    GO:0007286    spermatid development    The process whose specific outcome is the progression of a spermatid over time, from its formation to the mature structure.
    GO:0006409    tRNA export from nucleus    The directed movement of tRNA from the nucleus to the cytoplasm.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0090543    Flemming body    A cell part that is the central region of the midbody characterized by a gap in alpha-tubulin staining. It is a dense structure of antiparallel microtubules from the central spindle in the middle of the intercellular bridge.
    GO:0042565    RNA nuclear export complex    A complex which usually consists of three components, e.g. in Xenopus and yeast, the export receptor CRM1 (also known as exportin 1), the Ran protein and any RNA with a nuclear export sequence (NES). The complex acts to export RNA molecules with a NES from the nucleus through a nuclear pore.
    GO:0005814    centriole    A cellular organelle, found close to the nucleus in many eukaryotic cells, consisting of a small cylinder with microtubular walls, 300-500 nm long and 150-250 nm in diameter. It contains nine short, parallel, peripheral microtubular fibrils, each fibril consisting of one complete microtubule fused to two incomplete microtubules. Cells usually have two centrioles, lying at right angles to each other. At division, each pair of centrioles generates another pair and the twin pairs form the pole of the mitotic spindle.
    GO:0000785    chromatin    The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0001673    male germ cell nucleus    The nucleus of a male germ cell, a reproductive cell in males.
    GO:0002177    manchette    A tubular array of microtubules that extends from the perinuclear ring surrounding the spermatid nucleus to the flagellar axoneme. The manchette may also contain F-actin filaments.
    GO:0042470    melanosome    A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0030496    midbody    A thin cytoplasmic bridge formed between daughter cells at the end of cytokinesis. The midbody forms where the contractile ring constricts, and may persist for some time before finally breaking to complete cytokinesis.
    GO:0005635    nuclear envelope    The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space).
    GO:0005643    nuclear pore    Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined.
    GO:0005730    nucleolus    A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0043234    protein complex    A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.
    GO:0055037    recycling endosome    An organelle consisting of a network of tubules that functions in targeting molecules, such as receptors transporters and lipids, to the plasma membrane.
    GO:0036126    sperm flagellum    A microtubule-based flagellum (or cilium) that is part of a sperm, a mature male germ cell that develops from a spermatid.

Chain B,D   (RCC1_HUMAN | P18754)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0005087    Ran guanyl-nucleotide exchange factor activity    Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Ran family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.
    GO:0003682    chromatin binding    Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
    GO:0005085    guanyl-nucleotide exchange factor activity    Stimulates the exchange of guanyl nucleotides associated with a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.
    GO:0042393    histone binding    Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity.
    GO:0031492    nucleosomal DNA binding    Interacting selectively and non-covalently with the DNA portion of a nucleosome.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0000082    G1/S transition of mitotic cell cycle    The mitotic cell cycle transition by which a cell in G1 commits to S phase. The process begins with the build up of G1 cyclin-dependent kinase (G1 CDK), resulting in the activation of transcription of G1 cyclins. The process ends with the positive feedback of the G1 cyclins on the G1 CDK which commits the cell to S phase, in which DNA replication is initiated.
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
    GO:0007059    chromosome segregation    The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles.
    GO:0007052    mitotic spindle organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the microtubule spindle during a mitotic cell cycle.
    GO:0043547    positive regulation of GTPase activity    Any process that activates or increases the activity of a GTPase.
    GO:0007088    regulation of mitotic nuclear division    Any process that modulates the frequency, rate or extent of mitosis.
    GO:0051225    spindle assembly    The aggregation, arrangement and bonding together of a set of components to form the spindle, the array of microtubules and associated molecules that serves to move duplicated chromosomes apart.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0000794    condensed nuclear chromosome    A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct nuclear chromosome.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0000790    nuclear chromatin    The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus.
    GO:0031965    nuclear membrane    Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RAN_HUMAN | P628261ibr 1k5d 1k5g 1qbk 1rrp 2mmc 2mmg 2n1b 3ch5 3ea5 3gj0 3gj3 3gj4 3gj5 3gj6 3gj7 3gj8 3gjx 3nby 3nbz 3nc0 3nc1 3zjy 4c0q 4gmx 4gpt 4hat 4hau 4hav 4haw 4hax 4hay 4haz 4hb0 4hb2 4hb3 4hb4 4ol0 4wvf 5ciq 5cit 5ciw 5cj2 5cll 5clq 5dh9 5dha 5dhf 5di9 5dif 5dis 5dlq 5fyq 5jlj 5uwh 5uwi 5uwj 5uwo 5uwp 5uwq 5uwr 5uws 5uwt 5uwu 5uww
        RCC1_HUMAN | P187541a12 5e1b 5e1d 5e1m 5e1o 5e2a 5e2b

(-) Related Entries Specified in the PDB File

1a12 1A12 CONTAINS THE REGULATOR OF CHROMOSOME CONDENSATION 1 (HUMAN RCC1) SOLVED ALONE
1byu 1BYU CONTAINS THE SMALL NUCLEAR GTP-BINDING PROTEIN RAN (CANINE RAN) COMPLEXED WITH GDP-MG2+
1rrp 1RRP CONTAINS THE SMALL NUCLEAR GTP-BINDING PROTEIN RAN (HUMAN RAN) COMPLEXED WITH GPPNHP-MG2+ AND THE EFFECTOR RANBD1