1HV5 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE STROMELYSIN-3 (MMP-11) CATALYTIC DOMAIN COMPLEXED WITH A PHOSPHINIC INHIBITOR

Authors :   A. L. Gall, M. Ruff, R. Kannan, P. Cuniasse, A. Yiotakis, V. Dive, M. C. Rio, P. Basset, D. Moras

Date :   08 Jan 01 (Deposition) - 28 Mar 01 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.60

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: E  (1x)
Biol. Unit 6: F  (1x)

Keywords :   Stromelysin-3, Inhibition, Phosphinic Inhibitor, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. L. Gall, M. Ruff, R. Kannan, P. Cuniasse, A. Yiotakis, V. Dive, M. C. Rio, P. Basset, D. Moras
Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic Domain Complexed With A Phosphinic Inhibitor Mimicking The Transition-State.
J. Mol. Biol. V. 307 577 2001
PubMed-ID: 11254383 | Reference-DOI: 10.1006/JMBI.2001.4493
(for further references see the PDB file header)

Molecule 1 - STROMELYSIN 3
	Chains	:	A, B, C, D, E, F
	EC Number	:	3.4.24.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21
	Expression System Plasmid	:	PET 3B
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Gene	:	STRO3 (101-264)
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Synonym	:	MATRIX METALLOPROTEINASE 11, MMP-11, ST3, SL-3

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:					E
Biological Unit 6 (1x)	:						F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 36)

No.	Name	Count	Type	Full Name
1	CA	6	Ligand/Ion	CALCIUM ION
2	CPS	12	Ligand/Ion	3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE
3	RXP	6	Ligand/Ion	1-BENZYLOXYCARBONYLAMINO-2-PHENYL-ETHYL)-{2-[1-CARBAMOYL-2-(1H-INDOL-3-YL)-ETHYLCARBAMOYL]-5-PHENYL-PENTYL}-PHOSPHINIC ACID
4	ZN	12	Ligand/Ion	ZINC ION

Biological Unit 1 (2, 3)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	CPS	2	Ligand/Ion	3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE
3	RXP	1	Ligand/Ion	1-BENZYLOXYCARBONYLAMINO-2-PHENYL-ETHYL)-{2-[1-CARBAMOYL-2-(1H-INDOL-3-YL)-ETHYLCARBAMOYL]-5-PHENYL-PENTYL}-PHOSPHINIC ACID
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (2, 3)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	CPS	2	Ligand/Ion	3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE
3	RXP	1	Ligand/Ion	1-BENZYLOXYCARBONYLAMINO-2-PHENYL-ETHYL)-{2-[1-CARBAMOYL-2-(1H-INDOL-3-YL)-ETHYLCARBAMOYL]-5-PHENYL-PENTYL}-PHOSPHINIC ACID
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (2, 3)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	CPS	2	Ligand/Ion	3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE
3	RXP	1	Ligand/Ion	1-BENZYLOXYCARBONYLAMINO-2-PHENYL-ETHYL)-{2-[1-CARBAMOYL-2-(1H-INDOL-3-YL)-ETHYLCARBAMOYL]-5-PHENYL-PENTYL}-PHOSPHINIC ACID
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 4 (2, 3)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	CPS	2	Ligand/Ion	3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE
3	RXP	1	Ligand/Ion	1-BENZYLOXYCARBONYLAMINO-2-PHENYL-ETHYL)-{2-[1-CARBAMOYL-2-(1H-INDOL-3-YL)-ETHYLCARBAMOYL]-5-PHENYL-PENTYL}-PHOSPHINIC ACID
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 5 (2, 3)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	CPS	2	Ligand/Ion	3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE
3	RXP	1	Ligand/Ion	1-BENZYLOXYCARBONYLAMINO-2-PHENYL-ETHYL)-{2-[1-CARBAMOYL-2-(1H-INDOL-3-YL)-ETHYLCARBAMOYL]-5-PHENYL-PENTYL}-PHOSPHINIC ACID
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 6 (2, 3)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	CPS	2	Ligand/Ion	3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE
3	RXP	1	Ligand/Ion	1-BENZYLOXYCARBONYLAMINO-2-PHENYL-ETHYL)-{2-[1-CARBAMOYL-2-(1H-INDOL-3-YL)-ETHYLCARBAMOYL]-5-PHENYL-PENTYL}-PHOSPHINIC ACID
4	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (36, 36)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:168 , ASP A:170 , HIS A:183 , HIS A:196	BINDING SITE FOR RESIDUE ZN A 5501
02	AC2	SOFTWARE	HIS A:219 , HIS A:223 , HIS A:229 , RXP A:6001	BINDING SITE FOR RESIDUE ZN A 5502
03	AC3	SOFTWARE	ASP A:175 , GLY A:176 , GLY A:178 , ILE A:180 , ASP A:198 , GLU A:201	BINDING SITE FOR RESIDUE CA A 5503
04	AC4	SOFTWARE	HIS B:168 , ASP B:170 , HIS B:183 , HIS B:196	BINDING SITE FOR RESIDUE ZN B 5504
05	AC5	SOFTWARE	HIS B:219 , HIS B:223 , HIS B:229 , RXP B:6002 , HOH B:6300	BINDING SITE FOR RESIDUE ZN B 5505
06	AC6	SOFTWARE	ASP B:175 , GLY B:176 , GLY B:178 , ILE B:180 , ASP B:198 , GLU B:201	BINDING SITE FOR RESIDUE CA B 5506
07	AC7	SOFTWARE	HIS C:168 , ASP C:170 , HIS C:183 , HIS C:196	BINDING SITE FOR RESIDUE ZN C 5507
08	AC8	SOFTWARE	HIS C:219 , HIS C:223 , HIS C:229 , RXP C:6003	BINDING SITE FOR RESIDUE ZN C 5508
09	AC9	SOFTWARE	ASP C:175 , GLY C:176 , GLY C:178 , ILE C:180 , ASP C:198 , GLU C:201	BINDING SITE FOR RESIDUE CA C 5509
10	BC1	SOFTWARE	HIS D:168 , ASP D:170 , HIS D:183 , HIS D:196 , HOH D:1632	BINDING SITE FOR RESIDUE ZN D 5510
11	BC2	SOFTWARE	HIS D:219 , HIS D:223 , HIS D:229 , RXP D:6004	BINDING SITE FOR RESIDUE ZN D 5511
12	BC3	SOFTWARE	ASP D:175 , GLY D:176 , GLY D:178 , ILE D:180 , ASP D:198 , GLU D:201	BINDING SITE FOR RESIDUE CA D 5512
13	BC4	SOFTWARE	HIS E:168 , ASP E:170 , HIS E:183 , HIS E:196	BINDING SITE FOR RESIDUE ZN E 5513
14	BC5	SOFTWARE	HIS E:219 , HIS E:223 , HIS E:229 , RXP E:6005	BINDING SITE FOR RESIDUE ZN E 5514
15	BC6	SOFTWARE	ASP E:175 , GLY E:176 , GLY E:178 , ILE E:180 , ASP E:198 , GLU E:201	BINDING SITE FOR RESIDUE CA E 5515
16	BC7	SOFTWARE	HIS F:168 , ASP F:170 , HIS F:183 , HIS F:196	BINDING SITE FOR RESIDUE ZN F 5516
17	BC8	SOFTWARE	HIS F:219 , HIS F:223 , HIS F:229 , RXP F:6006	BINDING SITE FOR RESIDUE ZN F 5517
18	BC9	SOFTWARE	ASP F:175 , GLY F:176 , GLY F:178 , ILE F:180 , ASP F:198 , GLU F:201	BINDING SITE FOR RESIDUE CA F 5518
19	CC1	SOFTWARE	HIS A:223 , GLN A:228 , HIS A:229 , RXP A:6001 , HOH A:6033 , HOH A:6081 , HOH A:6149 , HOH A:6374	BINDING SITE FOR RESIDUE CPS A 5001
20	CC2	SOFTWARE	HIS B:223 , GLN B:228 , HIS B:229 , RXP B:6002 , HOH B:6095 , HOH B:6208 , HOH B:6300	BINDING SITE FOR RESIDUE CPS B 5002
21	CC3	SOFTWARE	TRP B:167 , GLN C:228 , HIS C:229 , RXP C:6003 , HOH C:6155 , HOH C:6356	BINDING SITE FOR RESIDUE CPS C 5003
22	CC4	SOFTWARE	HIS D:223 , GLN D:228 , HIS D:229 , HOH D:757 , HOH D:1050 , HOH D:1126	BINDING SITE FOR RESIDUE CPS D 5004
23	CC5	SOFTWARE	HIS E:223 , GLN E:228 , HIS E:229 , RXP E:6005 , HOH E:6108 , HOH E:6137	BINDING SITE FOR RESIDUE CPS E 5005
24	CC6	SOFTWARE	LEU A:147 , PHE A:186 , ARG A:191 , GLU A:192 , VAL A:224 , HOH A:6186 , HOH A:6217 , HOH A:6242	BINDING SITE FOR RESIDUE CPS A 5006
25	CC7	SOFTWARE	LYS B:111 , ASP B:158 , PHE B:186 , GLU B:192 , VAL B:224 , GLY B:226 , TYR B:261 , HOH B:6134	BINDING SITE FOR RESIDUE CPS B 5007
26	CC8	SOFTWARE	PHE C:186 , ARG C:191 , GLU C:192 , VAL C:224 , TYR C:261 , HOH C:6151	BINDING SITE FOR RESIDUE CPS C 5008
27	CC9	SOFTWARE	PHE D:186 , ARG D:191 , TYR D:261 , HOH D:689 , HOH D:839	BINDING SITE FOR RESIDUE CPS D 5009
28	DC1	SOFTWARE	ASP E:158 , GLU E:192 , GLY E:193 , VAL E:224 , LEU E:225 , GLY E:226 , TYR E:261 , HOH E:6059 , HOH E:6161 , HOH E:6320	BINDING SITE FOR RESIDUE CPS E 5010
29	DC2	SOFTWARE	LEU F:114 , ASP F:158 , PHE F:186 , VAL F:224 , LEU F:225 , TYR F:261 , HOH F:561 , HOH F:1455 , HOH F:1776	BINDING SITE FOR RESIDUE CPS F 5011
30	DC3	SOFTWARE	TRP C:167 , HOH D:2044 , HIS F:223 , GLN F:228 , HIS F:229 , PHE F:240 , HOH F:491 , HOH F:492 , HOH F:493 , HOH F:571 , HOH F:588 , HOH F:616 , HOH F:743 , HOH F:816 , HOH F:1100 , HOH F:1237 , HOH F:1260 , HOH F:1547 , HOH F:1762 , HOH F:1816 , RXP F:6006	BINDING SITE FOR RESIDUE CPS F 5091
31	DC4	SOFTWARE	LEU A:172 , GLY A:179 , ILE A:180 , LEU A:181 , ALA A:182 , ALA A:184 , GLN A:215 , VAL A:216 , HIS A:219 , GLU A:220 , HIS A:223 , HIS A:229 , SER A:238 , PRO A:239 , PHE A:240 , TYR A:241 , CPS A:5001 , ZN A:5502 , HOH A:6035 , HOH A:6041 , HOH A:6148 , HOH A:6149 , HOH A:6301	BINDING SITE FOR RESIDUE RXP A 6001
32	DC5	SOFTWARE	LEU B:172 , GLY B:179 , ILE B:180 , LEU B:181 , ALA B:182 , ALA B:184 , GLN B:215 , HIS B:219 , GLU B:220 , HIS B:223 , HIS B:229 , LEU B:236 , SER B:238 , PRO B:239 , PHE B:240 , TYR B:241 , CPS B:5002 , ZN B:5505 , HOH B:6103 , HOH B:6113 , HOH B:6300	BINDING SITE FOR RESIDUE RXP B 6002
33	DC6	SOFTWARE	GLY C:179 , ILE C:180 , LEU C:181 , ALA C:182 , ALA C:184 , GLN C:215 , HIS C:219 , GLU C:220 , HIS C:223 , HIS C:229 , LEU C:236 , SER C:238 , PRO C:239 , PHE C:240 , TYR C:241 , CPS C:5003 , ZN C:5508 , HOH C:6050 , HOH C:6155 , HOH C:6254	BINDING SITE FOR RESIDUE RXP C 6003
34	DC7	SOFTWARE	GLY D:179 , ILE D:180 , LEU D:181 , ALA D:182 , ALA D:184 , GLN D:215 , HIS D:219 , GLU D:220 , HIS D:223 , HIS D:229 , LEU D:236 , SER D:238 , PRO D:239 , PHE D:240 , TYR D:241 , HOH D:488 , HOH D:685 , HOH D:686 , HOH D:757 , HOH D:837 , ZN D:5511	BINDING SITE FOR RESIDUE RXP D 6004
35	DC8	SOFTWARE	GLY E:179 , ILE E:180 , LEU E:181 , ALA E:182 , ALA E:184 , GLN E:215 , HIS E:219 , GLU E:220 , HIS E:223 , HIS E:229 , LEU E:236 , SER E:238 , PRO E:239 , PHE E:240 , TYR E:241 , CPS E:5005 , ZN E:5514 , HOH E:6013 , HOH E:6088 , HOH E:6089 , HOH E:6090 , HOH E:6108 , HOH E:6218 , HOH E:6342	BINDING SITE FOR RESIDUE RXP E 6005
36	DC9	SOFTWARE	HOH D:995 , LEU F:172 , GLY F:179 , ILE F:180 , LEU F:181 , ALA F:182 , ALA F:184 , HIS F:219 , GLU F:220 , HIS F:229 , LEU F:236 , SER F:238 , PRO F:239 , PHE F:240 , TYR F:241 , HOH F:498 , HOH F:1044 , CPS F:5091 , ZN F:5517	BINDING SITE FOR RESIDUE RXP F 6006

(no "SS Bond" information available for 1HV5)

Asymmetric Unit

No.	Residues
1	Tyr A:245	-	Pro A:246

(no "SAP(SNP)/Variant" information available for 1HV5)

Asymmetric Unit (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZINC_PROTEASE	PS00142	Neutral zinc metallopeptidases, zinc-binding region signature.	MMP11_MOUSE	216-225	6	A:216-225 B:216-225 C:216-225 D:216-225 E:216-225 F:216-225

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZINC_PROTEASE	PS00142	Neutral zinc metallopeptidases, zinc-binding region signature.	MMP11_MOUSE	216-225	1	A:216-225 - - - - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZINC_PROTEASE	PS00142	Neutral zinc metallopeptidases, zinc-binding region signature.	MMP11_MOUSE	216-225	1	- B:216-225 - - - -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZINC_PROTEASE	PS00142	Neutral zinc metallopeptidases, zinc-binding region signature.	MMP11_MOUSE	216-225	1	- - C:216-225 - - -

Biological Unit 4 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZINC_PROTEASE	PS00142	Neutral zinc metallopeptidases, zinc-binding region signature.	MMP11_MOUSE	216-225	1	- - - D:216-225 - -

Biological Unit 5 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZINC_PROTEASE	PS00142	Neutral zinc metallopeptidases, zinc-binding region signature.	MMP11_MOUSE	216-225	1	- - - - E:216-225 -

Biological Unit 6 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZINC_PROTEASE	PS00142	Neutral zinc metallopeptidases, zinc-binding region signature.	MMP11_MOUSE	216-225	1	- - - - - F:216-225

Asymmetric Unit (4, 24)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.3a	ENSMUST00000000924	3a	ENSMUSE00000710988	chr10:75395247-75395079	169	MMP11_MOUSE	1-40	40	0	-	-
1.4	ENSMUST00000000924	4	ENSMUSE00000224530	chr10:75391254-75391025	230	MMP11_MOUSE	41-117	77	6	A:101-117 B:101-117 C:101-117 D:101-117 E:101-117 F:101-117	17 17 17 17 17 17
1.5b	ENSMUST00000000924	5b	ENSMUSE00000101927	chr10:75390235-75390092	144	MMP11_MOUSE	117-165	49	6	A:117-165 B:117-165 C:117-165 D:117-165 E:117-165 F:117-165	49 49 49 49 49 49
1.5c	ENSMUST00000000924	5c	ENSMUSE00000101918	chr10:75390007-75389874	134	MMP11_MOUSE	165-210	46	6	A:165-210 B:165-210 C:165-210 D:165-210 E:165-210 F:165-210	46 46 46 46 46 46
1.6b	ENSMUST00000000924	6b	ENSMUSE00000224504	chr10:75389734-75389493	242	MMP11_MOUSE	210-290	81	6	A:210-262 B:210-264 C:210-262 D:210-262 E:210-265 F:210-262	53 55 53 53 56 53
1.7a	ENSMUST00000000924	7a	ENSMUSE00000224494	chr10:75389372-75389156	217	MMP11_MOUSE	291-363	73	0	-	-
1.8	ENSMUST00000000924	8	ENSMUSE00000224486	chr10:75388422-75388165	258	MMP11_MOUSE	363-449	87	0	-	-
1.9c	ENSMUST00000000924	9c	ENSMUSE00000224478	chr10:75386860-75385967	894	MMP11_MOUSE	449-492	44	0	-	-

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:162
 aligned with MMP11_MOUSE | Q02853 from UniProtKB/Swiss-Prot  Length:492

    Alignment length:162
                                   110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260  
          MMP11_MOUSE   101 RFVLSGGRWEKTDLTYRILRFPWQLVREQVRQTVAEALQVWSEVTPLTFTEVHEGRADIMIDFARYWHGDNLPFDGPGGILAHAFFPKTHREGDVHFDYDETWTIGDNQGTDLLQVAAHEFGHVLGLQHTTAAKALMSPFYTFRYPLSLSPDDRRGIQHLYG 262
               SCOP domains d1hv5a_ A: Stromelysin-3 (MMP-11)                                                                                                                                  SCOP domains
               CATH domains 1hv5A00 A:101-262 Collagenase (Catalytic Domain)                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee..eeee.eeeeee.......hhhhhhhhhhhhhhhhhh....eeee.......eeeeee.................eeee.......eeeeee....ee......eehhhhhhhhhhhhh........................hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------ZINC_PROTE------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4         -----------------------------------------------Exon 1.5c  PDB: A:165-210 UniProt: 165-210    ---------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------Exon 1.5b  PDB: A:117-165 UniProt: 117-165       --------------------------------------------Exon 1.6b  PDB: A:210-262 UniProt: 210-290            Transcript 1 (2)
                 1hv5 A 101 MFVLSGGRWEKTDLTYRILRFPWQLVREQVRQTVAEALQVWSEVTPLTFTEVHEGRADIMIDFARYWHGDNLPFDGPGGILAHAFFPKTHREGDVHFDYDETWTIGDNQGTDLLQVAAHEFGHVLGLQHTTAAKALMSPFYTFRYPLSLSPDDRRGIQHLYG 262
                                   110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260

Chain B from PDB  Type:PROTEIN  Length:164
 aligned with MMP11_MOUSE | Q02853 from UniProtKB/Swiss-Prot  Length:492

    Alignment length:164
                                   110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260    
          MMP11_MOUSE   101 RFVLSGGRWEKTDLTYRILRFPWQLVREQVRQTVAEALQVWSEVTPLTFTEVHEGRADIMIDFARYWHGDNLPFDGPGGILAHAFFPKTHREGDVHFDYDETWTIGDNQGTDLLQVAAHEFGHVLGLQHTTAAKALMSPFYTFRYPLSLSPDDRRGIQHLYGRP 264
               SCOP domains d1hv5b_ B: Stromelysin-3 (MMP-11)                                                                                                                                    SCOP domains
               CATH domains 1hv5B00 B:101-264 Collagenase (Catalytic Domain)                                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..eeee.eeeeee.......hhhhhhhhhhhhhhhhhh....eeee.......eeeeee.................eeee.......eeeeee....ee......eehhhhhhhhhhhhh........................hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------ZINC_PROTE--------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4         -----------------------------------------------Exon 1.5c  PDB: B:165-210 UniProt: 165-210    ------------------------------------------------------ Transcript 1 (1)
           Transcript 1 (2) ----------------Exon 1.5b  PDB: B:117-165 UniProt: 117-165       --------------------------------------------Exon 1.6b  PDB: B:210-264 UniProt: 210-290 [INCOMPLETE] Transcript 1 (2)
                 1hv5 B 101 MFVLSGGRWEKTDLTYRILRFPWQLVREQVRQTVAEALQVWSEVTPLTFTEVHEGRADIMIDFARYWHGDNLPFDGPGGILAHAFFPKTHREGDVHFDYDETWTIGDNQGTDLLQVAAHEFGHVLGLQHTTAAKALMSPFYTFRYPLSLSPDDRRGIQHLYGRP 264
                                   110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260

Chain C from PDB  Type:PROTEIN  Length:162
 aligned with MMP11_MOUSE | Q02853 from UniProtKB/Swiss-Prot  Length:492

    Alignment length:162
                                   110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260  
          MMP11_MOUSE   101 RFVLSGGRWEKTDLTYRILRFPWQLVREQVRQTVAEALQVWSEVTPLTFTEVHEGRADIMIDFARYWHGDNLPFDGPGGILAHAFFPKTHREGDVHFDYDETWTIGDNQGTDLLQVAAHEFGHVLGLQHTTAAKALMSPFYTFRYPLSLSPDDRRGIQHLYG 262
               SCOP domains d1hv5c_ C: Stromelysin-3 (MMP-11)                                                                                                                                  SCOP domains
               CATH domains 1hv5C00 C:101-262 Collagenase (Catalytic Domain)                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eee..eee..eeeeee.......hhhhhhhhhhhhhhhhhh....eeee.......eeeeee.................eeee.......eeeeee....ee......eehhhhhhhhhhhhh........................hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------ZINC_PROTE------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4         -----------------------------------------------Exon 1.5c  PDB: C:165-210 UniProt: 165-210    ---------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------Exon 1.5b  PDB: C:117-165 UniProt: 117-165       --------------------------------------------Exon 1.6b  PDB: C:210-262 UniProt: 210-290            Transcript 1 (2)
                 1hv5 C 101 MFVLSGGRWEKTDLTYRILRFPWQLVREQVRQTVAEALQVWSEVTPLTFTEVHEGRADIMIDFARYWHGDNLPFDGPGGILAHAFFPKTHREGDVHFDYDETWTIGDNQGTDLLQVAAHEFGHVLGLQHTTAAKALMSPFYTFRYPLSLSPDDRRGIQHLYG 262
                                   110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260

Chain D from PDB  Type:PROTEIN  Length:162
 aligned with MMP11_MOUSE | Q02853 from UniProtKB/Swiss-Prot  Length:492

    Alignment length:162
                                   110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260  
          MMP11_MOUSE   101 RFVLSGGRWEKTDLTYRILRFPWQLVREQVRQTVAEALQVWSEVTPLTFTEVHEGRADIMIDFARYWHGDNLPFDGPGGILAHAFFPKTHREGDVHFDYDETWTIGDNQGTDLLQVAAHEFGHVLGLQHTTAAKALMSPFYTFRYPLSLSPDDRRGIQHLYG 262
               SCOP domains d1hv5d_ D: Stromelysin-3 (MMP-11)                                                                                                                                  SCOP domains
               CATH domains 1hv5D00 D:101-262 Collagenase (Catalytic Domain)                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee..eeee.eeeeee.......hhhhhhhhhhhhhhhhhh....eeee.......eeeeee.................eeee.......eeeeee....ee......eehhhhhhhhhhhhh........................hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------ZINC_PROTE------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4         -----------------------------------------------Exon 1.5c  PDB: D:165-210 UniProt: 165-210    ---------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------Exon 1.5b  PDB: D:117-165 UniProt: 117-165       --------------------------------------------Exon 1.6b  PDB: D:210-262 UniProt: 210-290            Transcript 1 (2)
                 1hv5 D 101 MFVLSGGRWEKTDLTYRILRFPWQLVREQVRQTVAEALQVWSEVTPLTFTEVHEGRADIMIDFARYWHGDNLPFDGPGGILAHAFFPKTHREGDVHFDYDETWTIGDNQGTDLLQVAAHEFGHVLGLQHTTAAKALMSPFYTFRYPLSLSPDDRRGIQHLYG 262
                                   110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260

Chain E from PDB  Type:PROTEIN  Length:165
 aligned with MMP11_MOUSE | Q02853 from UniProtKB/Swiss-Prot  Length:492

    Alignment length:165
                                   110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260     
          MMP11_MOUSE   101 RFVLSGGRWEKTDLTYRILRFPWQLVREQVRQTVAEALQVWSEVTPLTFTEVHEGRADIMIDFARYWHGDNLPFDGPGGILAHAFFPKTHREGDVHFDYDETWTIGDNQGTDLLQVAAHEFGHVLGLQHTTAAKALMSPFYTFRYPLSLSPDDRRGIQHLYGRPQ 265
               SCOP domains d1hv5e_ E: Stromelysin-3 (MMP-11)                                                                                                                                     SCOP domains
               CATH domains 1hv5E00 E:101-265 Collagenase (Catalytic Domain)                                                                                                                      CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..eeee.eeeeee.......hhhhhhhhhhhhhhhhhh....eeee.......eeeeee.................eeee.......eeeeee....ee......eehhhhhhhhhhhhh........................hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------ZINC_PROTE---------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4         -----------------------------------------------Exon 1.5c  PDB: E:165-210 UniProt: 165-210    ------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------Exon 1.5b  PDB: E:117-165 UniProt: 117-165       --------------------------------------------Exon 1.6b  PDB: E:210-265 UniProt: 210-290 [INCOMPLETE]  Transcript 1 (2)
                 1hv5 E 101 MFVLSGGRWEKTDLTYRILRFPWQLVREQVRQTVAEALQVWSEVTPLTFTEVHEGRADIMIDFARYWHGDNLPFDGPGGILAHAFFPKTHREGDVHFDYDETWTIGDNQGTDLLQVAAHEFGHVLGLQHTTAAKALMSPFYTFRYPLSLSPDDRRGIQHLYGRPQ 265
                                   110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260

Chain F from PDB  Type:PROTEIN  Length:162
 aligned with MMP11_MOUSE | Q02853 from UniProtKB/Swiss-Prot  Length:492

    Alignment length:162
                                   110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260  
          MMP11_MOUSE   101 RFVLSGGRWEKTDLTYRILRFPWQLVREQVRQTVAEALQVWSEVTPLTFTEVHEGRADIMIDFARYWHGDNLPFDGPGGILAHAFFPKTHREGDVHFDYDETWTIGDNQGTDLLQVAAHEFGHVLGLQHTTAAKALMSPFYTFRYPLSLSPDDRRGIQHLYG 262
               SCOP domains d1hv5f_ F: Stromelysin-3 (MMP-11)                                                                                                                                  SCOP domains
               CATH domains 1hv5F00 F:101-262 Collagenase (Catalytic Domain)                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eee..eee..eeeeee.......hhhhhhhhhhhhhhhhhh....eeee.......eeeeee.................eeee.......eeeeee....ee......eehhhhhhhhhhhhh........................hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------ZINC_PROTE------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4         -----------------------------------------------Exon 1.5c  PDB: F:165-210 UniProt: 165-210    ---------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------Exon 1.5b  PDB: F:117-165 UniProt: 117-165       --------------------------------------------Exon 1.6b  PDB: F:210-262 UniProt: 210-290            Transcript 1 (2)
                 1hv5 F 101 MFVLSGGRWEKTDLTYRILRFPWQLVREQVRQTVAEALQVWSEVTPLTFTEVHEGRADIMIDFARYWHGDNLPFDGPGGILAHAFFPKTHREGDVHFDYDETWTIGDNQGTDLLQVAAHEFGHVLGLQHTTAAKALMSPFYTFRYPLSLSPDDRRGIQHLYG 262
                                   110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Zincin-like (701)

Superfamily: Metalloproteases (zincins), catalytic domain (647)

Family: Matrix metalloproteases, catalytic domain (199)

Protein domain: Stromelysin-3 (MMP-11) (1)

Mouse (Mus musculus) [TaxId: 10090] (1)

1a	d1hv5a_	A:
1b	d1hv5b_	B:
1c	d1hv5c_	C:
1d	d1hv5d_	D:
1e	d1hv5e_	E:
1f	d1hv5f_	F:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Collagenase (Catalytic Domain) (236)

Homologous Superfamily: Collagenase (Catalytic Domain) (234)

House mouse (Mus musculus) (2)

1a	1hv5E00	E:101-265
1b	1hv5B00	B:101-264
1c	1hv5A00	A:101-262
1d	1hv5C00	C:101-262
1e	1hv5D00	D:101-262
1f	1hv5F00	F:101-262

(no "Pfam Domain" information available for 1HV5)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (MMP11_MOUSE | Q02853)

molecular function
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0004222	metalloendopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008237	metallopeptidase activity	Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0071711	basement membrane organization	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the basement membrane.
	GO:0030574	collagen catabolic process	The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells.
	GO:0030199	collagen fibril organization	Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix.
	GO:0030198	extracellular matrix organization	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an extracellular matrix.
	GO:0007275	multicellular organism development	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
	GO:0045599	negative regulation of fat cell differentiation	Any process that stops, prevents, or reduces the frequency, rate or extent of adipocyte differentiation.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
	GO:0031012	extracellular matrix	A structure lying external to one or more cells, which provides structural support for cells or tissues.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005578	proteinaceous extracellular matrix	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus.

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		Tyr A:245 - Pro A:246	[ RasMol ]

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	1hv5
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	3.4.24.-
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 36)

Sites (36, 36)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 6)

Exons (4, 24)

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