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1HV5
Biol. Unit 6
Info
Asym.Unit (234 KB)
Biol.Unit 1 (42 KB)
Biol.Unit 2 (41 KB)
Biol.Unit 3 (41 KB)
Biol.Unit 4 (41 KB)
Biol.Unit 5 (41 KB)
Biol.Unit 6 (42 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE STROMELYSIN-3 (MMP-11) CATALYTIC DOMAIN COMPLEXED WITH A PHOSPHINIC INHIBITOR
Authors
:
A. L. Gall, M. Ruff, R. Kannan, P. Cuniasse, A. Yiotakis, V. Dive, M. C. Rio, P. Basset, D. Moras
Date
:
08 Jan 01 (Deposition) - 28 Mar 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Keywords
:
Stromelysin-3, Inhibition, Phosphinic Inhibitor, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. L. Gall, M. Ruff, R. Kannan, P. Cuniasse, A. Yiotakis, V. Dive, M. C. Rio, P. Basset, D. Moras
Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic Domain Complexed With A Phosphinic Inhibitor Mimicking The Transition-State.
J. Mol. Biol. V. 307 577 2001
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 3)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
2a: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSa)
2b: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSb)
2c: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSc)
2d: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSd)
2e: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSe)
2f: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSf)
2g: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSg)
2h: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSh)
2i: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSi)
2j: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSj)
2k: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSk)
2l: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSl)
3a: 1-BENZYLOXYCARBONYLAMINO-2-PHENYL-... (RXPa)
3b: 1-BENZYLOXYCARBONYLAMINO-2-PHENYL-... (RXPb)
3c: 1-BENZYLOXYCARBONYLAMINO-2-PHENYL-... (RXPc)
3d: 1-BENZYLOXYCARBONYLAMINO-2-PHENYL-... (RXPd)
3e: 1-BENZYLOXYCARBONYLAMINO-2-PHENYL-... (RXPe)
3f: 1-BENZYLOXYCARBONYLAMINO-2-PHENYL-... (RXPf)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
4i: ZINC ION (ZNi)
4j: ZINC ION (ZNj)
4k: ZINC ION (ZNk)
4l: ZINC ION (ZNl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
CPS
2
Ligand/Ion
3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE
3
RXP
1
Ligand/Ion
1-BENZYLOXYCARBONYLAMINO-2-PHENYL-ETHYL)-{2-[1-CARBAMOYL-2-(1H-INDOL-3-YL)-ETHYLCARBAMOYL]-5-PHENYL-PENTYL}-PHOSPHINIC ACID
4
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(6, 6)
Info
All Sites
1: BC7 (SOFTWARE)
2: BC8 (SOFTWARE)
3: BC9 (SOFTWARE)
4: DC2 (SOFTWARE)
5: DC3 (SOFTWARE)
6: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
BC7
SOFTWARE
HIS F:168 , ASP F:170 , HIS F:183 , HIS F:196
BINDING SITE FOR RESIDUE ZN F 5516
2
BC8
SOFTWARE
HIS F:219 , HIS F:223 , HIS F:229 , RXP F:6006
BINDING SITE FOR RESIDUE ZN F 5517
3
BC9
SOFTWARE
ASP F:175 , GLY F:176 , GLY F:178 , ILE F:180 , ASP F:198 , GLU F:201
BINDING SITE FOR RESIDUE CA F 5518
4
DC2
SOFTWARE
LEU F:114 , ASP F:158 , PHE F:186 , VAL F:224 , LEU F:225 , TYR F:261 , HOH F:561 , HOH F:1455 , HOH F:1776
BINDING SITE FOR RESIDUE CPS F 5011
5
DC3
SOFTWARE
TRP C:167 , HOH D:2044 , HIS F:223 , GLN F:228 , HIS F:229 , PHE F:240 , HOH F:491 , HOH F:492 , HOH F:493 , HOH F:571 , HOH F:588 , HOH F:616 , HOH F:743 , HOH F:816 , HOH F:1100 , HOH F:1237 , HOH F:1260 , HOH F:1547 , HOH F:1762 , HOH F:1816 , RXP F:6006
BINDING SITE FOR RESIDUE CPS F 5091
6
DC9
SOFTWARE
HOH D:995 , LEU F:172 , GLY F:179 , ILE F:180 , LEU F:181 , ALA F:182 , ALA F:184 , HIS F:219 , GLU F:220 , HIS F:229 , LEU F:236 , SER F:238 , PRO F:239 , PHE F:240 , TYR F:241 , HOH F:498 , HOH F:1044 , CPS F:5091 , ZN F:5517
BINDING SITE FOR RESIDUE RXP F 6006
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (F:216-225)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
MMP11_MOUSE
216-225
1
-
-
-
-
-
F:216-225
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1hv5a_ (A:)
1b: SCOP_d1hv5b_ (B:)
1c: SCOP_d1hv5c_ (C:)
1d: SCOP_d1hv5d_ (D:)
1e: SCOP_d1hv5e_ (E:)
1f: SCOP_d1hv5f_ (F:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Matrix metalloproteases, catalytic domain
(199)
Protein domain
:
Stromelysin-3 (MMP-11)
(1)
Mouse (Mus musculus) [TaxId: 10090]
(1)
1a
d1hv5a_
A:
1b
d1hv5b_
B:
1c
d1hv5c_
C:
1d
d1hv5d_
D:
1e
d1hv5e_
E:
1f
d1hv5f_
F:
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1hv5E00 (E:101-265)
1b: CATH_1hv5B00 (B:101-264)
1c: CATH_1hv5A00 (A:101-262)
1d: CATH_1hv5C00 (C:101-262)
1e: CATH_1hv5D00 (D:101-262)
1f: CATH_1hv5F00 (F:101-262)
View:
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)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Collagenase (Catalytic Domain)
(236)
Homologous Superfamily
:
Collagenase (Catalytic Domain)
(234)
House mouse (Mus musculus)
(2)
1a
1hv5E00
E:101-265
1b
1hv5B00
B:101-264
1c
1hv5A00
A:101-262
1d
1hv5C00
C:101-262
1e
1hv5D00
D:101-262
1f
1hv5F00
F:101-262
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain F
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (234 KB)
Header - Asym.Unit
Biol.Unit 1 (42 KB)
Header - Biol.Unit 1
Biol.Unit 2 (41 KB)
Header - Biol.Unit 2
Biol.Unit 3 (41 KB)
Header - Biol.Unit 3
Biol.Unit 4 (41 KB)
Header - Biol.Unit 4
Biol.Unit 5 (41 KB)
Header - Biol.Unit 5
Biol.Unit 6 (42 KB)
Header - Biol.Unit 6
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