Chain A from PDB Type:PROTEIN Length:369
aligned with CAPSD_BPPRD | P22535 from UniProtKB/Swiss-Prot Length:395
Alignment length:369
25 35 45 55 65 75 85 95 105 115 125 135 145 155 165 175 185 195 205 215 225 235 245 255 265 275 285 295 305 315 325 335 345 355 365 375
CAPSD_BPPRD 16 RNQQAMAANLQARQIVLQQSYPVIQQVETQTFDPANRSVFDVTPANVGIVKGFLVKVTAAITNNHATEAVALTDFGPANLVQRVIYYDPDNQRHTETSGWHLHFVNTAKQGAPFLSSMVTDSPIKYGDVMNVIDAPATIAAGATGELTMYYWVPLAYSETDLTGAVLANVPQSKQRLKLEFANNNTAFAAVGANPLEAIYQGAGAADCEFEEISYTVYQSYLDQLPVGQNGYILPLIDLSTLYNLENSAQAGLTPNVDFVVQYANLYRYLSTIAVFDNGGSFNAGTDINYLSQRTANFSDTRKLDPKTWAAQTRRRIATDFPKGVYYCDNRDKPIYTLQYGNVGFVVNPKTVNQNARLLMGYEYFTSRT 384
SCOP domains d1hqna1 A:16-244 Coat protein p3 d1hqna2 A:245-384 Coat protein p3 SCOP domains
CATH domains 1hqnA01 A:16-243 Viral coat protein p3 1hqnA02 A:244-384 [code=2.60.120.20, no name defined] CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .hhhhhhhhhhhhhhhhhhheeeeeeeeeeee......eeee......eeeeeeeeeeeeeee......eee..hhhhh.eeeeeee.....eeeeeehhhhhhhhhhhhh..........................ee....eeeeeeeeeee...........ee........eeeeee......ee..........ee..hhh.eeeeeeeeeeeeeeee...ee..ee..hhhhhheeeeeeeeeee.......eeee.....eeeeeeeeeee.........eeeeeee..........hhhhhhhhhhhhhh......eeeee..............eeeeee......eeeeeeeeeeee.. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1hqn A 16 RNQQAmAANLQARQIVLQQSYPVIQQVETQTFDPANRSVFDVTPANVGIVKGFLVKVTAAITNNHATEAVALTDFGPANLVQRVIYYDPDNQRHTETSGWHLHFVNTAKQGAPFLSSmVTDSPIKYGDVmNVIDAPATIAAGATGELTmYYWVPLAYSETDLTGAVLANVPQSKQRLKLEFANNNTAFAAVGANPLEAIYQGAGAADCEFEEISYTVYQSYLDQLPVGQNGYILPLIDLSTLYNLENSAQAGLTPNVDFVVQYANLYRYLSTIAVFDNGGSFNAGTDINYLSQRTANFSDTRKLDPKTWAAQTRRRIATDFPKGVYYCDNRDKPIYTLQYGNVGFVVNPKTVNQNARLLmGYEYFTSRT 384
| 25 35 45 55 65 75 85 95 105 115 125 135 145 155 165 175 185 195 205 215 225 235 245 255 265 275 285 295 305 315 325 335 345 355 365 375
| 133-MSE 145-MSE 164-MSE 375-MSE
21-MSE
Chain B from PDB Type:PROTEIN Length:370
aligned with CAPSD_BPPRD | P22535 from UniProtKB/Swiss-Prot Length:395
Alignment length:370
24 34 44 54 64 74 84 94 104 114 124 134 144 154 164 174 184 194 204 214 224 234 244 254 264 274 284 294 304 314 324 334 344 354 364 374 384
CAPSD_BPPRD 15 LRNQQAMAANLQARQIVLQQSYPVIQQVETQTFDPANRSVFDVTPANVGIVKGFLVKVTAAITNNHATEAVALTDFGPANLVQRVIYYDPDNQRHTETSGWHLHFVNTAKQGAPFLSSMVTDSPIKYGDVMNVIDAPATIAAGATGELTMYYWVPLAYSETDLTGAVLANVPQSKQRLKLEFANNNTAFAAVGANPLEAIYQGAGAADCEFEEISYTVYQSYLDQLPVGQNGYILPLIDLSTLYNLENSAQAGLTPNVDFVVQYANLYRYLSTIAVFDNGGSFNAGTDINYLSQRTANFSDTRKLDPKTWAAQTRRRIATDFPKGVYYCDNRDKPIYTLQYGNVGFVVNPKTVNQNARLLMGYEYFTSRT 384
SCOP domains d1hqnb1 B:15-244 Coat protein p3 d1hqnb2 B:245-384 Coat protein p3 SCOP domains
CATH domains 1hqnB01 B:15-243 Viral coat protein p3 1hqnB02 B:244-384 [code=2.60.120.20, no name defined] CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author hhhhhhhhhhhhhhhhhhhhheeeeeeeeeeee......eeee.....eeeeeeeeeeeeeeee......eee..hhhhh.eeeeeee.....eeeeeehhhhhhhhhhhhh..........................ee....eeeeeeeeeee...........eee.......eeeeee......ee..........ee..hhh.eeeeeeeeeeeeeeee...ee..ee....hhh.eeeeeeeeeee.......eeee.....eeeeeeeeeee.........eeeeeeee.........hhhhhhhhhhhhhh......eeeee.............eeeeeee......eeeeeeeeeeee.. Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1hqn B 15 LRNQQAmAANLQARQIVLQQSYPVIQQVETQTFDPANRSVFDVTPANVGIVKGFLVKVTAAITNNHATEAVALTDFGPANLVQRVIYYDPDNQRHTETSGWHLHFVNTAKQGAPFLSSmVTDSPIKYGDVmNVIDAPATIAAGATGELTmYYWVPLAYSETDLTGAVLANVPQSKQRLKLEFANNNTAFAAVGANPLEAIYQGAGAADCEFEEISYTVYQSYLDQLPVGQNGYILPLIDLSTLYNLENSAQAGLTPNVDFVVQYANLYRYLSTIAVFDNGGSFNAGTDINYLSQRTANFSDTRKLDPKTWAAQTRRRIATDFPKGVYYCDNRDKPIYTLQYGNVGFVVNPKTVNQNARLLmGYEYFTSRT 384
| 24 34 44 54 64 74 84 94 104 114 124 134 144| 154 164 174 184 194 204 214 224 234 244 254 264 274 284 294 304 314 324 334 344 354 364 374| 384
21-MSE 133-MSE 145-MSE 164-MSE 375-MSE
Chain C from PDB Type:PROTEIN Length:372
aligned with CAPSD_BPPRD | P22535 from UniProtKB/Swiss-Prot Length:395
Alignment length:372
23 33 43 53 63 73 83 93 103 113 123 133 143 153 163 173 183 193 203 213 223 233 243 253 263 273 283 293 303 313 323 333 343 353 363 373 383
CAPSD_BPPRD 14 ALRNQQAMAANLQARQIVLQQSYPVIQQVETQTFDPANRSVFDVTPANVGIVKGFLVKVTAAITNNHATEAVALTDFGPANLVQRVIYYDPDNQRHTETSGWHLHFVNTAKQGAPFLSSMVTDSPIKYGDVMNVIDAPATIAAGATGELTMYYWVPLAYSETDLTGAVLANVPQSKQRLKLEFANNNTAFAAVGANPLEAIYQGAGAADCEFEEISYTVYQSYLDQLPVGQNGYILPLIDLSTLYNLENSAQAGLTPNVDFVVQYANLYRYLSTIAVFDNGGSFNAGTDINYLSQRTANFSDTRKLDPKTWAAQTRRRIATDFPKGVYYCDNRDKPIYTLQYGNVGFVVNPKTVNQNARLLMGYEYFTSRTE 385
SCOP domains d1hqnc1 C:14-244 Coat protein p3 d1hqnc2 C:245-385 Coat protein p3 SCOP domains
CATH domains 1hqnC01 C:14-243 Viral coat protein p3 1hqnC02 C:244-385 [code=2.60.120.20, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .hhhhhhhhhhhhhhhhhhhhheeeeeeeeeeee......eeee......eeeeeeeeeeeeeee......eee..hhhhh.eeeeeee.....eeeeeehhhhhhhhhhhhh..........................ee....eeeeeeeeeee...........ee........eeeeee......ee..........ee..hhh.eeeeeeeeeeeeeeee...ee..ee..hhhhhheeeeeeeeeee.......eeee.....eeeeeeeeeee.........eeeeeee..........hhhhhhhhhhhhhh......eeeee..............eeeeee......eeeeeeeeeeee... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1hqn C 14 ALRNQQAmAANLQARQIVLQQSYPVIQQVETQTFDPANRSVFDVTPANVGIVKGFLVKVTAAITNNHATEAVALTDFGPANLVQRVIYYDPDNQRHTETSGWHLHFVNTAKQGAPFLSSmVTDSPIKYGDVmNVIDAPATIAAGATGELTmYYWVPLAYSETDLTGAVLANVPQSKQRLKLEFANNNTAFAAVGANPLEAIYQGAGAADCEFEEISYTVYQSYLDQLPVGQNGYILPLIDLSTLYNLENSAQAGLTPNVDFVVQYANLYRYLSTIAVFDNGGSFNAGTDINYLSQRTANFSDTRKLDPKTWAAQTRRRIATDFPKGVYYCDNRDKPIYTLQYGNVGFVVNPKTVNQNARLLmGYEYFTSRTE 385
|23 33 43 53 63 73 83 93 103 113 123 133 143 | 153 163| 173 183 193 203 213 223 233 243 253 263 273 283 293 303 313 323 333 343 353 363 373 | 383
21-MSE 133-MSE 145-MSE 164-MSE 375-MSE
Legend: |
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→ Gap |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |