Chain A from PDB Type:PROTEIN Length:369
aligned with CAPSD_BPPRD | P22535 from UniProtKB/Swiss-Prot Length:395
Alignment length:369
24 34 44 54 64 74 84 94 104 114 124 134 144 154 164 174 184 194 204 214 224 234 244 254 264 274 284 294 304 314 324 334 344 354 364 374
CAPSD_BPPRD 15 LRNQQAMAANLQARQIVLQQSYPVIQQVETQTFDPANRSVFDVTPANVGIVKGFLVKVTAAITNNHATEAVALTDFGPANLVQRVIYYDPDNQRHTETSGWHLHFVNTAKQGAPFLSSMVTDSPIKYGDVMNVIDAPATIAAGATGELTMYYWVPLAYSETDLTGAVLANVPQSKQRLKLEFANNNTAFAAVGANPLEAIYQGAGAADCEFEEISYTVYQSYLDQLPVGQNGYILPLIDLSTLYNLENSAQAGLTPNVDFVVQYANLYRYLSTIAVFDNGGSFNAGTDINYLSQRTANFSDTRKLDPKTWAAQTRRRIATDFPKGVYYCDNRDKPIYTLQYGNVGFVVNPKTVNQNARLLMGYEYFTSR 383
SCOP domains d1cjda1 A:15-244 Coat protein p3 d1cjda2 A:245-383 Coat protein p3 SCOP domains
CATH domains 1cjdA01 A:15-243 Viral coat protein p3 1cjdA02 A:244-383 [code=2.60.120.20, no name defined] CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..hhhhhhhhhhhhhhhhhh.eeeeeeeeeeee......eeee......eeeeeeeeeeeeeee............hhhh.eeeeeee........eeehhhhhhhhhhhh.................................eeeeeeeeeee.....................eeeeee.......................hhheee.eeeeeeeeeeee............hhhhheeeeeeeeee.......eeeee.....eeeeeeeeeee.........eeeeeeee..........hhhhhhhhhhhh.......eeeee.......hhhh..eeeeeee......eeeeeeeeeeee. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1cjd A 15 LRNQQAMAANLQARQIVLQQSYPVIQQVETQTFDPANRSVFDVTPANVGIVKGFLVKVTAAITNNHATEAVALTDFGPANLVQRVIYYDPDNQRHTETSGWHLHFVNTAKQGAPFLSSMVTDSPIKYGDVMNVIDAPATIAAGATGELTMYYWVPLAYSETDLTGAVLANVPQSKQRLKLEFANNNTAFAAVGANPLEAIYQGAGAADCEFEEISYTVYQSYLDQLPVGQNGYILPLIDLSTLYNLENSAQAGLTPNVDFVVQYANLYRYLSTIAVFDNGGSFNAGTDINYLSQRTANFSDTRKLDPKTWAAQTRRRIATDFPKGVYYCDNRDKPIYTLQYGNVGFVVNPKTVNQNARLLMGYEYFTSR 383
24 34 44 54 64 74 84 94 104 114 124 134 144 154 164 174 184 194 204 214 224 234 244 254 264 274 284 294 304 314 324 334 344 354 364 374
Chain B from PDB Type:PROTEIN Length:372
aligned with CAPSD_BPPRD | P22535 from UniProtKB/Swiss-Prot Length:395
Alignment length:372
22 32 42 52 62 72 82 92 102 112 122 132 142 152 162 172 182 192 202 212 222 232 242 252 262 272 282 292 302 312 322 332 342 352 362 372 382
CAPSD_BPPRD 13 AALRNQQAMAANLQARQIVLQQSYPVIQQVETQTFDPANRSVFDVTPANVGIVKGFLVKVTAAITNNHATEAVALTDFGPANLVQRVIYYDPDNQRHTETSGWHLHFVNTAKQGAPFLSSMVTDSPIKYGDVMNVIDAPATIAAGATGELTMYYWVPLAYSETDLTGAVLANVPQSKQRLKLEFANNNTAFAAVGANPLEAIYQGAGAADCEFEEISYTVYQSYLDQLPVGQNGYILPLIDLSTLYNLENSAQAGLTPNVDFVVQYANLYRYLSTIAVFDNGGSFNAGTDINYLSQRTANFSDTRKLDPKTWAAQTRRRIATDFPKGVYYCDNRDKPIYTLQYGNVGFVVNPKTVNQNARLLMGYEYFTSRT 384
SCOP domains d1cjdb1 B:13-244 Coat protein p3 d1cjdb2 B:245-384 Coat protein p3 SCOP domains
CATH domains 1cjdB01 B:13-243 Viral coat protein p3 1cjdB02 B:244-384 [code=2.60.120.20, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ..hhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeee......eeee......eeeeeeeeeeeeeee............hhhh.eeeeeee........eeehhhhhhhhhhhh.................................eeeeeeeeeee.....................eeeeee.......................hhheee.eeeeeeeeeeee............hhhhheeeeeeeeeee......eeeee.....eeeeeeeeeee.........eeeeeeee..........hhhhhhhhhhhh.......eeeee.............eeeeeee......eeeeeeeeeeee.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1cjd B 13 AALRNQQAMAANLQARQIVLQQSYPVIQQVETQTFDPANRSVFDVTPANVGIVKGFLVKVTAAITNNHATEAVALTDFGPANLVQRVIYYDPDNQRHTETSGWHLHFVNTAKQGAPFLSSMVTDSPIKYGDVMNVIDAPATIAAGATGELTMYYWVPLAYSETDLTGAVLANVPQSKQRLKLEFANNNTAFAAVGANPLEAIYQGAGAADCEFEEISYTVYQSYLDQLPVGQNGYILPLIDLSTLYNLENSAQAGLTPNVDFVVQYANLYRYLSTIAVFDNGGSFNAGTDINYLSQRTANFSDTRKLDPKTWAAQTRRRIATDFPKGVYYCDNRDKPIYTLQYGNVGFVVNPKTVNQNARLLMGYEYFTSRT 384
22 32 42 52 62 72 82 92 102 112 122 132 142 152 162 172 182 192 202 212 222 232 242 252 262 272 282 292 302 312 322 332 342 352 362 372 382
Chain C from PDB Type:PROTEIN Length:367
aligned with CAPSD_BPPRD | P22535 from UniProtKB/Swiss-Prot Length:395
Alignment length:369
25 35 45 55 65 75 85 95 105 115 125 135 145 155 165 175 185 195 205 215 225 235 245 255 265 275 285 295 305 315 325 335 345 355 365 375
CAPSD_BPPRD 16 RNQQAMAANLQARQIVLQQSYPVIQQVETQTFDPANRSVFDVTPANVGIVKGFLVKVTAAITNNHATEAVALTDFGPANLVQRVIYYDPDNQRHTETSGWHLHFVNTAKQGAPFLSSMVTDSPIKYGDVMNVIDAPATIAAGATGELTMYYWVPLAYSETDLTGAVLANVPQSKQRLKLEFANNNTAFAAVGANPLEAIYQGAGAADCEFEEISYTVYQSYLDQLPVGQNGYILPLIDLSTLYNLENSAQAGLTPNVDFVVQYANLYRYLSTIAVFDNGGSFNAGTDINYLSQRTANFSDTRKLDPKTWAAQTRRRIATDFPKGVYYCDNRDKPIYTLQYGNVGFVVNPKTVNQNARLLMGYEYFTSRT 384
SCOP domains d1cjdc1 C:16-244 Coat protein p3 --d1cjdc2 C:247-384 Coat protein p3 SCOP domains
CATH domains 1cjdC01 C:16-243 Viral coat protein p3 1 cjdC02 C:244-384 [code=2.60.120.20, no name defined] CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .hhhhhhhhhhhhhhhhhh.eeeeeeeeeeee......eeee......eeeeeeeeeeeeeee............hhhh.eeeeeee........eeehhhhhhhhhhhh.................................eeeeeeeeeee.....................eeeeee..hhhh.................hhheee.eeeeeeeeeeee......--......hhheeeeeeeeeee......eeeee.....eeeeeeeeeee.........eeeeeeee..........hhhhhhhhhhhh.......eeeee.......hhh...eeeeeee......eeeeeeeeeeee.. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1cjd C 16 RNQQAMAANLQARQIVLQQSYPVIQQVETQTFDPANRSVFDVTPANVGIVKGFLVKVTAAITNNHATEAVALTDFGPANLVQRVIYYDPDNQRHTETSGWHLHFVNTAKQGAPFLSSMVTDSPIKYGDVMNVIDAPATIAAGATGELTMYYWVPLAYSETDLTGAVLANVPQSKQRLKLEFANNNTAFAAVGANPLEAIYQGAGAADCEFEEISYTVYQSYLDQLPVGQ--YILPLIDLSTLYNLENSAQAGLTPNVDFVVQYANLYRYLSTIAVFDNGGSFNAGTDINYLSQRTANFSDTRKLDPKTWAAQTRRRIATDFPKGVYYCDNRDKPIYTLQYGNVGFVVNPKTVNQNARLLMGYEYFTSRT 384
25 35 45 55 65 75 85 95 105 115 125 135 145 155 165 175 185 195 205 215 225 235 |- | 255 265 275 285 295 305 315 325 335 345 355 365 375
244 |
247
Legend: |
|
→ Mismatch |
(orange background) |
|
- |
→ Gap |
(green background, '-', border residues have a numbering label) |
|
|
→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
|
x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
|
extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |