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(-) Description

Title :  PROLYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH L-PROLINE
 
Authors :  A. Yaremchuk, M. Tukalo, S. Cusack
Date :  14 May 01  (Deposition) - 18 Jun 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Aminoacyl-Trna Synthetase, Atp + L-Proline + Trna(Pro) Amp + Ppi + L-Prolyl-Trna(Pro), Class Ii Aminoacyl-Trna Synthetase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Yaremchuk, M. Tukalo, M. Grotli, S. Cusack
A Succession Of Substrate Induced Conformational Changes Ensures The Amino Acid Specificity Of Thermus Thermophilus Prolyl-Trna Synthetase: Comparison With Histidyl-Trna Synthetase
J. Mol. Biol. V. 309 989 2001
PubMed-ID: 11399074  |  Reference-DOI: 10.1006/JMBI.2001.4712
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROLYL-TRNA SYNTHETASE
    Chains: A, B, C, D
    EC Number: 6.1.1.15
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 274
    Other Details: EACH MONOMER CONTAINS 1 ZINC ATOM CO-ORDINATED TO CYS-427, CYS432, CYS-458, CYS-461
    Other Details - Source: PURIFICATION DESCRIBED IN REFERENCE 2
    Strain: HB-8

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1PRO4Mod. Amino AcidPROLINE
2ZN4Ligand/IonZINC ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1PRO2Mod. Amino AcidPROLINE
2ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1PRO2Mod. Amino AcidPROLINE
2ZN-1Ligand/IonZINC ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:427 , CYS A:432 , CYS A:458 , CYS A:461BINDING SITE FOR RESIDUE ZN A 490
2AC2SOFTWARECYS B:427 , CYS B:432 , CYS B:458 , CYS B:461BINDING SITE FOR RESIDUE ZN B 490
3AC3SOFTWARECYS C:427 , CYS C:432 , CYS C:458 , CYS C:461BINDING SITE FOR RESIDUE ZN C 490
4AC4SOFTWARECYS D:427 , CYS D:432 , CYS D:458 , CYS D:461BINDING SITE FOR RESIDUE ZN D 490
5AC5SOFTWARETHR A:111 , GLU A:113 , ARG A:142 , TRP A:158 , GLU A:160 , PHE A:205 , HIS A:230 , SER A:258 , TRP A:259 , GLY A:260BINDING SITE FOR RESIDUE PRO A1478
6AC6SOFTWARETHR B:111 , GLU B:113 , ARG B:142 , TRP B:158 , GLU B:160 , PHE B:205 , THR B:228 , HIS B:230 , SER B:258 , TRP B:259 , GLY B:260BINDING SITE FOR RESIDUE PRO B1478
7AC7SOFTWARETHR C:111 , GLU C:113 , ARG C:142 , TRP C:158 , GLU C:160 , PHE C:205 , THR C:228 , HIS C:230 , SER C:258 , TRP C:259 , GLY C:260 , HOH C:2112BINDING SITE FOR RESIDUE PRO C1478
8AC8SOFTWARETHR D:111 , GLU D:113 , ARG D:142 , TRP D:158 , GLU D:160 , PHE D:205 , THR D:228 , HIS D:230 , SER D:258 , TRP D:259 , GLY D:260BINDING SITE FOR RESIDUE PRO D1478

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1H4T)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Leu A:130 -Pro A:131
2Leu B:130 -Pro B:131
3Leu C:130 -Pro C:131
4Leu D:130 -Pro D:131

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1H4T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1H4T)

(-) Exons   (0, 0)

(no "Exon" information available for 1H4T)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:465
 aligned with SYP_THET8 | Q5SM28 from UniProtKB/Swiss-Prot  Length:477

    Alignment length:474
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  477 
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474  | 
           SYP_THET8      5 KGLTPQSQDFSEWYLEVIQKAELADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEALMKDGKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGLSWRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEWELKGVPFRVELGPKDLEGGQAVLASRLGGKETLPLAALPEALPGKLDAFHEELYRRALAFREDHTRKVDTYEAFKEAVQEGFALAFHCGDKACERLIQEETTATTRCVPFEAEPEEGFCVRCGRPSAYGKRVVFAKAY-    -
               SCOP domains d1h4ta2 A:5-276 Prolyl-tRNA synthetase (ProRS)                                                                                                                                                                                                                                  d1h4ta1 A:277-403 Prolyl-tRNA synthetase (ProRS) domain                                                                        d1h4ta3 A:404-477 C-terminal domain of ProRS                              - SCOP domains
               CATH domains 1h4tA01 A:5-282 Bira Bifunctional Protein; Domain 2                                                                                                                                                                                                                                   1h4tA02 A:283-386  [code=3.40.50.800, no name defined]                                                  -----------------1h4tA03 A:404-476  [code=3.30.110.30, no name defined]                   -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhh..eee......eeehhhhhhhhhhhhhhhhhhhhhh..ee.....eee.hhh---------.....eeeeee..eeeeeeeee...hhhhhhhhhhhhh..hhhh.eeeeeeeeee.............eeeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh...eeee.hhhhh.....eeeeeeee.....eeeeeeeee..hhhhhhh..eee.....eee.eeeeeeeehhhhhhhhhhhh...............eeeee..hhhhhhhhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhh...eeeeehhhhhhh.eeeeee......eee..hhhhhhhhhhhhhhhhhhhhhhhhhhh.eee..hhhhhhhhh...eeee....hhhhhhhhhhhhh.eeeeee......................eeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1h4t A    5 KGLTPQSQDFSEWYLEVIQKAELADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFL---------FSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEALMKDGKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGLSWRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEWELKGVPFRVELGPKDLEGGQAVLASRLGGKETLPLAALPEALPGKLDAFHEELYRRALAFREDHTRKVDTYEAFKEAVQEGFALAFHCGDKACERLIQEETTATTRCVPFEAEPEEGFCVRCGRPSAYGKRVVFAKAYP 1478
                                    14        24        34        44        54        64        74  |      -  |     94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474  ||
                                                                                                   77        87                                                                                                                                                                                                                                                                                                                                                                                                   477|
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  1478


Chain B from PDB  Type:PROTEIN  Length:465
 aligned with SYP_THET8 | Q5SM28 from UniProtKB/Swiss-Prot  Length:477

    Alignment length:474
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  477 
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474  | 
           SYP_THET8      5 KGLTPQSQDFSEWYLEVIQKAELADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEALMKDGKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGLSWRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEWELKGVPFRVELGPKDLEGGQAVLASRLGGKETLPLAALPEALPGKLDAFHEELYRRALAFREDHTRKVDTYEAFKEAVQEGFALAFHCGDKACERLIQEETTATTRCVPFEAEPEEGFCVRCGRPSAYGKRVVFAKAY-    -
               SCOP domains d1h4tb2 B:5-276 Prolyl-tRNA synthetase (ProRS)                                                                                                                                                                                                                                  d1h4tb1 B:277-403 Prolyl-tRNA synthetase (ProRS) domain                                                                        d1h4tb3 B:404-477 C-terminal domain of ProRS                              - SCOP domains
               CATH domains 1h4tB01 B:5-282 Bira Bifunctional Protein; Domain 2                                                                                                                                                                                                                                   1h4tB02 B:283-386  [code=3.40.50.800, no name defined]                                                  -----------------1h4tB03 B:404-476  [code=3.30.110.30, no name defined]                   -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhh..eee......eeehhhhhhhhhhhhhhhhhhhhhh..ee.....eee.hhh---------......eeeee..eeeeeeeee...hhhhhhhhhhhhh..hhhh.eeeeeeeeee.............eeeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh..eeeee...........eeeeeeee.....eeeeeeeee..hhhhhhh..eee.....eee.eeeeeeeehhhhhhhhhhhh....ee.........eeeee..hhhhhhhhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhee..eeeeehhhhhhh.eeeeee......eee..hhhhhhhhhhhhhhhhhhhhhhhhhhhheee..hhhhhhhhhhhheeee....hhhhhhhhhhhhh.eeeeee......................eeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1h4t B    5 KGLTPQSQDFSEWYLEVIQKAELADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFL---------FSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEALMKDGKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGLSWRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEWELKGVPFRVELGPKDLEGGQAVLASRLGGKETLPLAALPEALPGKLDAFHEELYRRALAFREDHTRKVDTYEAFKEAVQEGFALAFHCGDKACERLIQEETTATTRCVPFEAEPEEGFCVRCGRPSAYGKRVVFAKAYP 1478
                                    14        24        34        44        54        64        74  |      -  |     94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474  ||
                                                                                                   77        87                                                                                                                                                                                                                                                                                                                                                                                                   477|
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  1478


Chain C from PDB  Type:PROTEIN  Length:465
 aligned with SYP_THET8 | Q5SM28 from UniProtKB/Swiss-Prot  Length:477

    Alignment length:474
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  477 
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474  | 
           SYP_THET8      5 KGLTPQSQDFSEWYLEVIQKAELADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEALMKDGKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGLSWRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEWELKGVPFRVELGPKDLEGGQAVLASRLGGKETLPLAALPEALPGKLDAFHEELYRRALAFREDHTRKVDTYEAFKEAVQEGFALAFHCGDKACERLIQEETTATTRCVPFEAEPEEGFCVRCGRPSAYGKRVVFAKAY-    -
               SCOP domains d1h4tc2 C:5-276 Prolyl-tRNA synthetase (ProRS)                                                                                                                                                                                                                                  d1h4tc1 C:277-403 Prolyl-tRNA synthetase (ProRS) domain                                                                        d1h4tc3 C:404-477 C-terminal domain of ProRS                              - SCOP domains
               CATH domains 1h4tC01 C:5-282 Bira Bifunctional Protein; Domain 2                                                                                                                                                                                                                                   1h4tC02 C:283-386  [code=3.40.50.800, no name defined]                                                  -----------------1h4tC03 C:404-476  [code=3.30.110.30, no name defined]                   -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhh..eee......eeehhhhhhhhhhhhhhhhhhhhhh..ee.....eee.hhh---------.....eeeeee..eeeeeeeee...hhhhhhhhhhhhh..hhhh.eeeeeeeeee.............eeeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhh.....eeee...........eeeeeeee.....eeeeeeeee..hhhhhhhh.eee.....eee.eeeeeeeehhhhhhhhhhhh...............eeeee.....hhhhhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhh...eeeeehhhhhhh.eeeeee....eeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhheee..hhhhhhhhhhhheeee....hhhhhhhhhhhhh.eeeeee......................eeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1h4t C    5 KGLTPQSQDFSEWYLEVIQKAELADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFL---------FSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEALMKDGKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGLSWRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEWELKGVPFRVELGPKDLEGGQAVLASRLGGKETLPLAALPEALPGKLDAFHEELYRRALAFREDHTRKVDTYEAFKEAVQEGFALAFHCGDKACERLIQEETTATTRCVPFEAEPEEGFCVRCGRPSAYGKRVVFAKAYP 1478
                                    14        24        34        44        54        64        74  |      -  |     94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474  ||
                                                                                                   77        87                                                                                                                                                                                                                                                                                                                                                                                                   477|
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  1478


Chain D from PDB  Type:PROTEIN  Length:465
 aligned with SYP_THET8 | Q5SM28 from UniProtKB/Swiss-Prot  Length:477

    Alignment length:474
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  477 
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474  | 
           SYP_THET8      5 KGLTPQSQDFSEWYLEVIQKAELADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEALMKDGKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGLSWRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEWELKGVPFRVELGPKDLEGGQAVLASRLGGKETLPLAALPEALPGKLDAFHEELYRRALAFREDHTRKVDTYEAFKEAVQEGFALAFHCGDKACERLIQEETTATTRCVPFEAEPEEGFCVRCGRPSAYGKRVVFAKAY-    -
               SCOP domains d1h4td2 D:5-276 Prolyl-tRNA synthetase (ProRS)                                                                                                                                                                                                                                  d1h4td1 D:277-403 Prolyl-tRNA synthetase (ProRS) domain                                                                        d1h4td3 D:404-477 C-terminal domain of ProRS                              - SCOP domains
               CATH domains 1h4tD01 D:5-282 Bira Bifunctional Protein; Domain 2                                                                                                                                                                                                                                   1h4tD02 D:283-386  [code=3.40.50.800, no name defined]                                                  -----------------1h4tD03 D:404-476  [code=3.30.110.30, no name defined]                   -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhh..eee......eeehhhhhhhhhhhhhhhhhhhhhh..ee.....eee.hhh---------.....eeeeee..eeeeeeeee...hhhhhhhhhhhhh..hhhh.eeeeeeeeee.............eeeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh...eeee.hhhhh.....eeeeeeee.....eeeeeeeeeeehhhhhhh..eee.....eee.eeeeeeeehhhhhhhhhhhh....ee.........eeeee.....hhhhhhhhhhhhhhhhhh....eee......hhhhhhhhhhhee..eeeeehhhhhhh.eeeeee....eeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhh.eee..hhhhhhhhh...eeee....hhhhhhhhhhhhh.eeeeee......................eeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1h4t D    5 KGLTPQSQDFSEWYLEVIQKAELADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFL---------FSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEALMKDGKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGLSWRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEWELKGVPFRVELGPKDLEGGQAVLASRLGGKETLPLAALPEALPGKLDAFHEELYRRALAFREDHTRKVDTYEAFKEAVQEGFALAFHCGDKACERLIQEETTATTRCVPFEAEPEEGFCVRCGRPSAYGKRVVFAKAYP 1478
                                    14        24        34        44        54        64        74  |      -  |     94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474  ||
                                                                                                   77        87                                                                                                                                                                                                                                                                                                                                                                                                   477|
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  1478
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 12)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (3, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1H4T)

(-) Gene Ontology  (10, 10)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (SYP_THET8 | Q5SM28)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0004812    aminoacyl-tRNA ligase activity    Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0004827    proline-tRNA ligase activity    Catalysis of the reaction: ATP + L-proline + tRNA(Pro) = AMP + diphosphate + L-prolyl-tRNA(Pro).
biological process
    GO:0006433    prolyl-tRNA aminoacylation    The process of coupling proline to prolyl-tRNA, catalyzed by prolyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
    GO:0006418    tRNA aminoacylation for protein translation    The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

 Visualization

(-) Interactive Views

Asymmetric Unit
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 Related Entries

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        SYP_THET8 | Q5SM28: 1h4q 1h4s 1hc7

(-) Related Entries Specified in the PDB File

1h4q PROLYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH TRNAPRO(CGG), ATP AND PROLINOL
1h4s PROLYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH TRNAPRO(CGG) AND A PROLYL-ADENYLATE ANALOGUE
1hc7 PROLYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS