1H2O - JenaLib

Title :   SOLUTION STRUCTURE OF THE MAJOR CHERRY ALLERGEN PRU AV 1 MUTANT E45W

Authors :   P. Neudecker, K. Lehmann, J. Nerkamp, K. Schweimer, H. Sticht, M. Boehm, S. Scheurer, S. Vieths, P. Roesch

Date :   12 Aug 02 (Deposition) - 28 Aug 03 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (24x)

Keywords :   Allergen, Major Cherry Allergen, Pathogenesis-Related Protein, Heteronuclear Nmr, Structure, Plant Defense (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. Neudecker, K. Lehmann, J. Nerkamp, T. Haase, A. Wangorsch, K. Fotisch, S. Hoffmann, P. Roesch, S. Vieths, S. Scheurer
Mutational Epitope Analysis Of Pru Av 1 And Api G 1, The Major Allergens Of Cherry (Prunus Avium) And Celery (Apium Graveolens): Correlating Ige Reactivity With Three-Dimensional Structure
Biochem. J. V. 376 97 2003
PubMed-ID: 12943529 | Reference-DOI: 10.1042/BJ20031057
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:159
 aligned with PRU1_PRUAV | O24248 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:159
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151         
           PRU1_PRUAV     2 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAYN 160
               SCOP domains d1h2oa_ A: Major tree pollen allergen                                                                                                                           SCOP domains
               CATH domains 1h2oA00 A:1-159  [code=3.30.530.20, no name defined]                                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee...hhhhhhhh...hhhhhhhh.......eee.........eeeeee......eeeeeee.eee....eeeeee...........eeeeeeee.......eeeeeeeeeee.......hhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------PATHOGENESIS_BETVI  PDB: A:88-120--------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1h2o A   1 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILWGDGGPGTIKKITFGEGSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAYN 159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

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Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (0, 0)

Gene Ontology (2, 2)

NMR Structure(hide GO term definitions)

Chain A (PRU1_PRUAV | O24248)

biological process
	GO:0006952		defense response		Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
	GO:0009607		response to biotic stimulus		Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism.

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