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(-) Description

Title :  SOLUTION STRUCTURE OF THE MAJOR CHERRY ALLERGEN PRU AV 1
 
Authors :  P. Neudecker, J. Nerkamp, K. Schweimer, H. Sticht, M. Boehm, S. Scheurer, S. Vieths, P. Roesch
Date :  15 Mar 00  (Deposition) - 15 Mar 01  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (22x)
Keywords :  Allergen, Major Cherry Allergen, Pathogenesis-Related Protein, Heteronuclear Nmr, Structure (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Neudecker, K. Schweimer, J. Nerkamp, S. Scheurer, S. Vieths, H. Sticht, P. Roesch
Allergic Cross-Reactivity Made Visible: The Solution Structure Of The Major Cherry Allergen Pru Av 1
J. Biol. Chem. V. 276 22756 2001
PubMed-ID: 11287426  |  Reference-DOI: 10.1074/JBC.M101657200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PRU AV 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET16B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Organism Common: SWEET CHERRY
    Organism Scientific: PRUNUS AVIUM
    Organism Taxid: 42229

 Structural Features

(-) Chains, Units

  
NMR Structure (22x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1E09)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1E09)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1E09)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PATHOGENESIS_BETVIPS00451 Pathogenesis-related proteins Bet v I family signature.PRU1_PRUAV89-121  1A:88-120

(-) Exons   (0, 0)

(no "Exon" information available for 1E09)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:159
 aligned with PRU1_PRUAV | O24248 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:159
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151         
           PRU1_PRUAV     2 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAYN 160
               SCOP domains d1e09a_ A: Major tree pollen allergen                                                                                                                           SCOP domains
               CATH domains 1e09A00 A:1-159  [code=3.30.530.20, no name defined]                                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee...hhhhhhhh...hhhhhhhh.......eee.........eeeeee......eeeeeee.eee....eeeeee...........eeeeeeee.......eeeeeeeeeee.......hhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------PATHOGENESIS_BETVI  PDB: A:88-120--------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1e09 A   1 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAYN 159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1E09)

(-) Gene Ontology  (2, 2)

NMR Structure(hide GO term definitions)
Chain A   (PRU1_PRUAV | O24248)
biological process
    GO:0006952    defense response    Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
    GO:0009607    response to biotic stimulus    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PRU1_PRUAV | O24248: 1h2o

(-) Related Entries Specified in the PDB File

1b6f BIRCH POLLEN ALLERGEN BET V 1
1btv STRUCTURE OF BET V 1, NMR, 20 STRUCTURES
1bv1 BIRCH POLLEN ALLERGEN BET V 1