1GVF - JenaLib

Biol.Unit 1 - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Title :   STRUCTURE OF TAGATOSE-1,6-BISPHOSPHATE ALDOLASE

Authors :   D. R. Hall, W. N. Hunter

Date :   11 Feb 02 (Deposition) - 18 Jun 02 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.45

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (2x)

Keywords :   Lyase, Zinc. (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. R. Hall, C. S. Bond, G. A. Leonard, C. I. Watt, A. Berry, W. N. Hunter
Structure Of Tagatose-1, 6-Bisphosphate Aldolase; Insight Into Chiral Discrimination, Mechanism And Specificity Of Class Ii Aldolases
J. Biol. Chem. V. 277 22018 2002
PubMed-ID: 11940603 | Reference-DOI: 10.1074/JBC.M202464200

Molecule 1 - TAGATOSE-BISPHOSPHATE ALDOLASE AGAY
	Chains	:	A, B
	EC Number	:	4.1.2.40
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Synonym	:	TAGATOSE-1,6-BISPHOSPHATE ALDOLASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 20)

No.	Name	Count	Type	Full Name
1	EDO	14	Ligand/Ion	1,2-ETHANEDIOL
2	NA	2	Ligand/Ion	SODIUM ION
3	PGH	2	Ligand/Ion	PHOSPHOGLYCOLOHYDROXAMIC ACID
4	ZN	2	Ligand/Ion	ZINC ION

Biological Unit 1 (2, 32)

No.	Name	Count	Type	Full Name
1	EDO	28	Ligand/Ion	1,2-ETHANEDIOL
2	NA	-1	Ligand/Ion	SODIUM ION
3	PGH	4	Ligand/Ion	PHOSPHOGLYCOLOHYDROXAMIC ACID
4	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (20, 20)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:83 , HIS A:180 , HIS A:208 , PGH A:287	BINDING SITE FOR RESIDUE ZN A 288
02	AC2	SOFTWARE	ALA A:179 , GLY A:181 , TYR A:183 , GLY A:209 , SER A:211 , PGH A:287	BINDING SITE FOR RESIDUE NA A 289
03	AC3	SOFTWARE	HIS B:83 , HIS B:180 , HIS B:208 , PGH B:287	BINDING SITE FOR RESIDUE ZN B 288
04	AC4	SOFTWARE	ALA B:179 , GLY B:181 , TYR B:183 , GLY B:209 , SER B:211 , PGH B:287	BINDING SITE FOR RESIDUE NA B 289
05	AC5	SOFTWARE	ASP A:82 , HIS A:83 , ALA A:179 , HIS A:180 , GLY A:181 , HIS A:208 , GLY A:209 , ALA A:210 , SER A:211 , ASN A:230 , VAL A:231 , ALA A:232 , THR A:233 , ZN A:288 , NA A:289 , HOH A:2347 , HOH A:2348	BINDING SITE FOR RESIDUE PGH A 287
06	AC6	SOFTWARE	SER A:2 , SER A:70 , HOH A:2349 , HOH A:2350 , EDO B:1291	BINDING SITE FOR RESIDUE EDO A1289
07	AC7	SOFTWARE	LEU A:9 , PRO A:44 , VAL A:45 , PRO A:76 , LEU A:77 , ALA A:78 , HOH A:2117	BINDING SITE FOR RESIDUE EDO A1290
08	AC8	SOFTWARE	ASP A:190 , ARG A:193 , GLU A:196	BINDING SITE FOR RESIDUE EDO A1291
09	AC9	SOFTWARE	GLN A:32 , GLU A:36 , TYR A:73	BINDING SITE FOR RESIDUE EDO A1292
10	BC1	SOFTWARE	TYR A:63 , HIS A:95 , ALA A:96 , HOH A:2352	BINDING SITE FOR RESIDUE EDO A1293
11	BC2	SOFTWARE	LEU A:9 , ASP A:12 , TYR A:18 , PRO A:44 , ARG A:283 , ILE A:284 , HOH A:2353	BINDING SITE FOR RESIDUE EDO A1294
12	BC3	SOFTWARE	ASN B:24 , ASP B:82 , HIS B:83 , ALA B:179 , HIS B:180 , GLY B:181 , HIS B:208 , GLY B:209 , ALA B:210 , SER B:211 , ASN B:230 , VAL B:231 , ALA B:232 , THR B:233 , ZN B:288 , NA B:289 , HOH B:2296	BINDING SITE FOR RESIDUE PGH B 287
13	BC4	SOFTWARE	PRO B:44 , VAL B:45 , PRO B:76 , LEU B:77 , ALA B:78 , HOH B:2298	BINDING SITE FOR RESIDUE EDO B1288
14	BC5	SOFTWARE	SER B:2 , SER B:70 , MET B:75 , HOH B:2299 , HOH B:2300 , HOH B:2301 , HOH B:2302	BINDING SITE FOR RESIDUE EDO B1289
15	BC6	SOFTWARE	HIS B:95 , ALA B:96 , HOH B:2303	BINDING SITE FOR RESIDUE EDO B1290
16	BC7	SOFTWARE	ASN A:74 , PRO A:76 , EDO A:1289 , HIS B:95 , GLN B:127 , EDO B:1292	BINDING SITE FOR RESIDUE EDO B1291
17	BC8	SOFTWARE	ASN A:74 , HIS B:95 , GLU B:199 , EDO B:1291	BINDING SITE FOR RESIDUE EDO B1292
18	BC9	SOFTWARE	SER B:106 , PHE B:108 , ARG B:137 , HOH B:2132	BINDING SITE FOR RESIDUE EDO B1293
19	CC1	SOFTWARE	VAL B:114 , LYS B:115 , LYS B:118 , HOH B:2136 , HOH B:2140 , HOH B:2304	BINDING SITE FOR RESIDUE EDO B1294
20	CC2	SOFTWARE	ARG B:91 , ASP B:122 , PHE B:123 , HOH B:2305	BINDING SITE FOR RESIDUE EDO B1295

(no "SS Bond" information available for 1GVF)

(no "Cis Peptide Bond" information available for 1GVF)

(no "SAP(SNP)/Variant" information available for 1GVF)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ALDOLASE_CLASS_II_1	PS00602	Fructose-bisphosphate aldolase class-II signature 1.	KBAY_ECO57	71-84	2	A:71-84 B:71-84
				KBAY_ECOL6	71-84	2	A:71-84 B:71-84
				KBAY_ECOLI	71-84	2	A:71-84 B:71-84
2	ALDOLASE_CLASS_II_2	PS00806	Fructose-bisphosphate aldolase class-II signature 2.	KBAY_ECO57	131-142	2	A:131-139 B:131-141
				KBAY_ECOL6	131-142	2	A:131-139 B:131-141
				KBAY_ECOLI	131-142	2	A:131-139 B:131-141

Biological Unit 1 (2, 24)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ALDOLASE_CLASS_II_1	PS00602	Fructose-bisphosphate aldolase class-II signature 1.	KBAY_ECO57	71-84	4	A:71-84 B:71-84
				KBAY_ECOL6	71-84	4	A:71-84 B:71-84
				KBAY_ECOLI	71-84	4	A:71-84 B:71-84
2	ALDOLASE_CLASS_II_2	PS00806	Fructose-bisphosphate aldolase class-II signature 2.	KBAY_ECO57	131-142	4	A:131-139 B:131-141
				KBAY_ECOL6	131-142	4	A:131-139 B:131-141
				KBAY_ECOLI	131-142	4	A:131-139 B:131-141

(no "Exon" information available for 1GVF)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:273
 aligned with KBAY_ECO57 | P0AB76 from UniProtKB/Swiss-Prot  Length:286

    Alignment length:284
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281    
           KBAY_ECO57     2 SIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRIS 285
               SCOP domains d1gvfa_ A: Tagatose-1,6-bisphosphate aldolase                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1gvfA00 A:2-285 Aldolase class I                                                                                                                                                                                                                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhhhhh..eeeeee....-----------.....hhhhhhhhhhhhh..eeee...............hhhhhhhhhhhh...eee......hhhhhhhhhhh.eeeeeehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------ALDOLASE_CLASS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (1) ---------------------------------------------------------------------------------------------------------------------------------ALDOLASE_CLA----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gvf A   2 SIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLG-----------SAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRIS 285
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       | -       151       161       171       181       191       201       211       221       231       241       251       261       271       281    
                                                                                                                                                                   139         151

Chain A from PDB  Type:PROTEIN  Length:273
 aligned with KBAY_ECOL6 | P0AB75 from UniProtKB/Swiss-Prot  Length:286

    Alignment length:284
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281    
           KBAY_ECOL6     2 SIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRIS 285
               SCOP domains d1gvfa_ A: Tagatose-1,6-bisphosphate aldolase                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1gvfA00 A:2-285 Aldolase class I                                                                                                                                                                                                                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhhhhh..eeeeee....-----------.....hhhhhhhhhhhhh..eeee...............hhhhhhhhhhhh...eee......hhhhhhhhhhh.eeeeeehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------------------------------------------------------------ALDOLASE_CLASS----------------------------------------------ALDOLASE_CLA----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gvf A   2 SIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLG-----------SAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRIS 285
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       | -       151       161       171       181       191       201       211       221       231       241       251       261       271       281    
                                                                                                                                                                   139         151

Chain A from PDB  Type:PROTEIN  Length:273
 aligned with KBAY_ECOLI | P0AB74 from UniProtKB/Swiss-Prot  Length:286

    Alignment length:284
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281    
           KBAY_ECOLI     2 SIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRIS 285
               SCOP domains d1gvfa_ A: Tagatose-1,6-bisphosphate aldolase                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1gvfA00 A:2-285 Aldolase class I                                                                                                                                                                                                                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhhhhh..eeeeee....-----------.....hhhhhhhhhhhhh..eeee...............hhhhhhhhhhhh...eee......hhhhhhhhhhh.eeeeeehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------------------------------------------------------------------ALDOLASE_CLASS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------------------------------------------------------------ALDOLASE_CLA----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gvf A   2 SIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLG-----------SAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRIS 285
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       | -       151       161       171       181       191       201       211       221       231       241       251       261       271       281    
                                                                                                                                                                   139         151

Chain B from PDB  Type:PROTEIN  Length:275
 aligned with KBAY_ECO57 | P0AB76 from UniProtKB/Swiss-Prot  Length:286

    Alignment length:283
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281   
           KBAY_ECO57     2 SIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRI 284
               SCOP domains d1gvfb_ B: Tagatose-1,6-bisphosphate aldolase                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1gvfB00 B:2-284 Aldolase class I                                                                                                                                                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhhhhh..eeeee.......--------hhhhh.hhhhhhhhhhhhh..eee................hhhhhhhhhhhh...eee......hhhhhhhhhhh.eeeeeehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------ALDOLASE_CLASS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (1) ---------------------------------------------------------------------------------------------------------------------------------ALDOLASE_CLA---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gvf B   2 SIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGV--------ESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRI 284
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281   
                                                                                                                                                                     141      150

Chain B from PDB  Type:PROTEIN  Length:275
 aligned with KBAY_ECOL6 | P0AB75 from UniProtKB/Swiss-Prot  Length:286

    Alignment length:283
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281   
           KBAY_ECOL6     2 SIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRI 284
               SCOP domains d1gvfb_ B: Tagatose-1,6-bisphosphate aldolase                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1gvfB00 B:2-284 Aldolase class I                                                                                                                                                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhhhhh..eeeee.......--------hhhhh.hhhhhhhhhhhhh..eee................hhhhhhhhhhhh...eee......hhhhhhhhhhh.eeeeeehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------------------------------------------------------------ALDOLASE_CLASS----------------------------------------------ALDOLASE_CLA---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gvf B   2 SIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGV--------ESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRI 284
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281   
                                                                                                                                                                     141      150

Chain B from PDB  Type:PROTEIN  Length:275
 aligned with KBAY_ECOLI | P0AB74 from UniProtKB/Swiss-Prot  Length:286

    Alignment length:283
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281   
           KBAY_ECOLI     2 SIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRI 284
               SCOP domains d1gvfb_ B: Tagatose-1,6-bisphosphate aldolase                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1gvfB00 B:2-284 Aldolase class I                                                                                                                                                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhhhhh..eeeee.......--------hhhhh.hhhhhhhhhhhhh..eee................hhhhhhhhhhhh...eee......hhhhhhhhhhh.eeeeeehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------------------------------------------------------------------ALDOLASE_CLASS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------------------------------------------------------------ALDOLASE_CLA---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gvf B   2 SIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGV--------ESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRI 284
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281   
                                                                                                                                                                     141      150

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: TIM beta/alpha-barrel (3956)

Superfamily: Aldolase (457)

Family: Class II FBP aldolase (9)

Protein domain: Tagatose-1,6-bisphosphate aldolase (1)

Escherichia coli [TaxId: 562] (1)

1a	d1gvfa_	A:
1b	d1gvfb_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Barrel (2994)

Topology: TIM Barrel (2806)

Homologous Superfamily: Aldolase class I (887)

Escherichia coli. Organism_taxid: 562. (44)

1a	1gvfB00	B:2-284
1b	1gvfA00	A:2-285

(no "Pfam Domain" information available for 1GVF)

Asymmetric Unit(hide GO term definitions)

Chain A,B (KBAY_ECOL6 | P0AB75)

molecular function
	GO:0016832	aldehyde-lyase activity	Catalysis of the cleavage of a C-C bond in a molecule containing a hydroxyl group and a carbonyl group to form two smaller molecules, each being an aldehyde or a ketone.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0009025	tagatose-bisphosphate aldolase activity	Catalysis of the reaction: D-tagatose 1,6-diphosphate = D-glyceraldehyde 3-phosphate + glycerone phosphate.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:2001059	D-tagatose 6-phosphate catabolic process	The chemical reactions and pathways resulting in the breakdown of a D-tagatose 6-phosphate.
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.

Chain A,B (KBAY_ECO57 | P0AB76)

molecular function
	GO:0016832	aldehyde-lyase activity	Catalysis of the cleavage of a C-C bond in a molecule containing a hydroxyl group and a carbonyl group to form two smaller molecules, each being an aldehyde or a ketone.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0009025	tagatose-bisphosphate aldolase activity	Catalysis of the reaction: D-tagatose 1,6-diphosphate = D-glyceraldehyde 3-phosphate + glycerone phosphate.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:2001059	D-tagatose 6-phosphate catabolic process	The chemical reactions and pathways resulting in the breakdown of a D-tagatose 6-phosphate.
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.

Chain A,B (KBAY_ECOLI | P0AB74)

molecular function
	GO:0016832	aldehyde-lyase activity	Catalysis of the cleavage of a C-C bond in a molecule containing a hydroxyl group and a carbonyl group to form two smaller molecules, each being an aldehyde or a ketone.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0009025	tagatose-bisphosphate aldolase activity	Catalysis of the reaction: D-tagatose 1,6-diphosphate = D-glyceraldehyde 3-phosphate + glycerone phosphate.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:2001059	D-tagatose 6-phosphate catabolic process	The chemical reactions and pathways resulting in the breakdown of a D-tagatose 6-phosphate.
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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	1gvf
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Description

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Ligands, Modified Residues, Ions (4, 20)

Sites (20, 20)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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