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1GVF
Asym. Unit
Info
Asym.Unit (212 KB)
Biol.Unit 1 (409 KB)
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(1)
Title
:
STRUCTURE OF TAGATOSE-1,6-BISPHOSPHATE ALDOLASE
Authors
:
D. R. Hall, W. N. Hunter
Date
:
11 Feb 02 (Deposition) - 18 Jun 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.45
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Lyase, Zinc.
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. R. Hall, C. S. Bond, G. A. Leonard, C. I. Watt, A. Berry, W. N. Hunter
Structure Of Tagatose-1, 6-Bisphosphate Aldolase; Insight Into Chiral Discrimination, Mechanism And Specificity Of Class Ii Aldolases
J. Biol. Chem. V. 277 22018 2002
[
close entry info
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Hetero Components
(4, 20)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
3a: PHOSPHOGLYCOLOHYDROXAMIC ACID (PGHa)
3b: PHOSPHOGLYCOLOHYDROXAMIC ACID (PGHb)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
14
Ligand/Ion
1,2-ETHANEDIOL
2
NA
2
Ligand/Ion
SODIUM ION
3
PGH
2
Ligand/Ion
PHOSPHOGLYCOLOHYDROXAMIC ACID
4
ZN
2
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:83 , HIS A:180 , HIS A:208 , PGH A:287
BINDING SITE FOR RESIDUE ZN A 288
02
AC2
SOFTWARE
ALA A:179 , GLY A:181 , TYR A:183 , GLY A:209 , SER A:211 , PGH A:287
BINDING SITE FOR RESIDUE NA A 289
03
AC3
SOFTWARE
HIS B:83 , HIS B:180 , HIS B:208 , PGH B:287
BINDING SITE FOR RESIDUE ZN B 288
04
AC4
SOFTWARE
ALA B:179 , GLY B:181 , TYR B:183 , GLY B:209 , SER B:211 , PGH B:287
BINDING SITE FOR RESIDUE NA B 289
05
AC5
SOFTWARE
ASP A:82 , HIS A:83 , ALA A:179 , HIS A:180 , GLY A:181 , HIS A:208 , GLY A:209 , ALA A:210 , SER A:211 , ASN A:230 , VAL A:231 , ALA A:232 , THR A:233 , ZN A:288 , NA A:289 , HOH A:2347 , HOH A:2348
BINDING SITE FOR RESIDUE PGH A 287
06
AC6
SOFTWARE
SER A:2 , SER A:70 , HOH A:2349 , HOH A:2350 , EDO B:1291
BINDING SITE FOR RESIDUE EDO A1289
07
AC7
SOFTWARE
LEU A:9 , PRO A:44 , VAL A:45 , PRO A:76 , LEU A:77 , ALA A:78 , HOH A:2117
BINDING SITE FOR RESIDUE EDO A1290
08
AC8
SOFTWARE
ASP A:190 , ARG A:193 , GLU A:196
BINDING SITE FOR RESIDUE EDO A1291
09
AC9
SOFTWARE
GLN A:32 , GLU A:36 , TYR A:73
BINDING SITE FOR RESIDUE EDO A1292
10
BC1
SOFTWARE
TYR A:63 , HIS A:95 , ALA A:96 , HOH A:2352
BINDING SITE FOR RESIDUE EDO A1293
11
BC2
SOFTWARE
LEU A:9 , ASP A:12 , TYR A:18 , PRO A:44 , ARG A:283 , ILE A:284 , HOH A:2353
BINDING SITE FOR RESIDUE EDO A1294
12
BC3
SOFTWARE
ASN B:24 , ASP B:82 , HIS B:83 , ALA B:179 , HIS B:180 , GLY B:181 , HIS B:208 , GLY B:209 , ALA B:210 , SER B:211 , ASN B:230 , VAL B:231 , ALA B:232 , THR B:233 , ZN B:288 , NA B:289 , HOH B:2296
BINDING SITE FOR RESIDUE PGH B 287
13
BC4
SOFTWARE
PRO B:44 , VAL B:45 , PRO B:76 , LEU B:77 , ALA B:78 , HOH B:2298
BINDING SITE FOR RESIDUE EDO B1288
14
BC5
SOFTWARE
SER B:2 , SER B:70 , MET B:75 , HOH B:2299 , HOH B:2300 , HOH B:2301 , HOH B:2302
BINDING SITE FOR RESIDUE EDO B1289
15
BC6
SOFTWARE
HIS B:95 , ALA B:96 , HOH B:2303
BINDING SITE FOR RESIDUE EDO B1290
16
BC7
SOFTWARE
ASN A:74 , PRO A:76 , EDO A:1289 , HIS B:95 , GLN B:127 , EDO B:1292
BINDING SITE FOR RESIDUE EDO B1291
17
BC8
SOFTWARE
ASN A:74 , HIS B:95 , GLU B:199 , EDO B:1291
BINDING SITE FOR RESIDUE EDO B1292
18
BC9
SOFTWARE
SER B:106 , PHE B:108 , ARG B:137 , HOH B:2132
BINDING SITE FOR RESIDUE EDO B1293
19
CC1
SOFTWARE
VAL B:114 , LYS B:115 , LYS B:118 , HOH B:2136 , HOH B:2140 , HOH B:2304
BINDING SITE FOR RESIDUE EDO B1294
20
CC2
SOFTWARE
ARG B:91 , ASP B:122 , PHE B:123 , HOH B:2305
BINDING SITE FOR RESIDUE EDO B1295
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: ALDOLASE_CLASS_II_1 (A:71-84,B:71-84,A:71-84,B:71-84,A:...)
2: ALDOLASE_CLASS_II_2 (A:131-139,B:131-141,A:131-139,B:13...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDOLASE_CLASS_II_1
PS00602
Fructose-bisphosphate aldolase class-II signature 1.
KBAY_ECO57
71-84
2
A:71-84
B:71-84
KBAY_ECOL6
71-84
2
A:71-84
B:71-84
KBAY_ECOLI
71-84
2
A:71-84
B:71-84
2
ALDOLASE_CLASS_II_2
PS00806
Fructose-bisphosphate aldolase class-II signature 2.
KBAY_ECO57
131-142
2
A:131-139
B:131-141
KBAY_ECOL6
131-142
2
A:131-139
B:131-141
KBAY_ECOLI
131-142
2
A:131-139
B:131-141
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1gvfa_ (A:)
1b: SCOP_d1gvfb_ (B:)
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)
(
)
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(
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(
)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
Class II FBP aldolase
(9)
Protein domain
:
Tagatose-1,6-bisphosphate aldolase
(1)
Escherichia coli [TaxId: 562]
(1)
1a
d1gvfa_
A:
1b
d1gvfb_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1gvfB00 (B:2-284)
1b: CATH_1gvfA00 (A:2-285)
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Escherichia coli. Organism_taxid: 562.
(44)
1a
1gvfB00
B:2-284
1b
1gvfA00
A:2-285
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Atom Selection
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Nucleic
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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