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Asym./Biol. Unit (Jmol Viewer)

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Title :   AFLATOXIN ALDEHYDE REDUCTASE (AKR7A1) FROM RAT LIVER

Authors :   E. Kozma, E. Brown, E. M. Ellis, A. J. Lapthorn

Date :   08 Feb 02 (Deposition) - 27 Jun 02 (Release) - 21 Sep 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.38

Chains :   Asym./Biol. Unit : A,B

Keywords :   Oxidoreductase, Aldo-Keto Reductase, Aflatoxin B1, Succinic Semialdehyde Oxidoreductase, Akr7 Family (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. Kozma, E. Brown, E. M. Ellis, A. J. Lapthorn
The Crystal Structure Of Rat Liver Akr7A1: A Dimeric Member Of The Aldo-Keto Reductase Superfamily
J. Biol. Chem. V. 277 16285 2002
PubMed-ID: 11839745 | Reference-DOI: 10.1074/JBC.M110808200
(for further references see the PDB file header)

Molecule 1 - AFLATOXIN B1 ALDEHYDE REDUCTASE MEMBER 3
	Chains	:	A, B
	EC Number	:	1.-.-.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET15B
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Organ	:	LIVER
	Organism Common	:	NORWAY RAT
	Organism Scientific	:	RATTUS NORVEGICUS
	Organism Taxid	:	10116
	Synonym	:	AFLATOXIN B1 ALDEHYDE REDUCTASE, AFLATOXIN ALDEHYDE REDUCTASE, AKR7A1, AFB1-AR, B1 ALDEHYDE REDUCTASE MEMBER 1, RAFAR1

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 14)

No.	Name	Count	Type	Full Name
1	CIT	1	Ligand/Ion	CITRIC ACID
2	GOL	12	Ligand/Ion	GLYCEROL
3	NAP	1	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

Asymmetric Unit (14, 14)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:11 , ALA A:12 , MET A:13 , ARG A:18 , ASP A:40 , TYR A:45 , SER A:139 , ASN A:140 , GLN A:165 , PHE A:193 , ASN A:194 , PRO A:195 , LEU A:196 , ALA A:197 , GLY A:198 , GLY A:199 , ARG A:204 , SER A:217 , ARG A:218 , TYR A:228 , ILE A:260 , ILE A:282 , LEU A:283 , GLY A:284 , SER A:286 , GLN A:290 , GLN A:293 , ASN A:294 , ARG A:327 , CIT A:1331 , HOH A:2128 , HOH A:2131 , HOH A:2185 , HOH A:2186 , HOH A:2187	BINDING SITE FOR RESIDUE NAP A1328
02	AC2	SOFTWARE	MET A:13 , TYR A:45 , MET A:77 , HIS A:109 , PHE A:224 , TYR A:228 , ARG A:231 , ARG A:327 , NAP A:1328 , HOH A:2182	BINDING SITE FOR RESIDUE CIT A1331
03	AC3	SOFTWARE	HIS A:113 , GLU A:145 , GLU A:148 , HOH A:2072 , HOH A:2188 , HOH A:2189 , HOH A:2190 , HIS B:185	BINDING SITE FOR RESIDUE GOL A1329
04	AC4	SOFTWARE	PHE A:180 , ARG A:184 , LEU A:188 , GLN A:272 , ASP A:279 , HOH A:2116 , HOH A:2191	BINDING SITE FOR RESIDUE GOL A1330
05	AC5	SOFTWARE	MET B:77 , PHE B:78 , GOL B:1334	BINDING SITE FOR RESIDUE GOL B1328
06	AC6	SOFTWARE	ARG B:88 , PHE B:89 , GLU B:92 , THR B:93 , HOH B:2117 , HOH B:2305	BINDING SITE FOR RESIDUE GOL B1329
07	AC7	SOFTWARE	PHE B:180 , ARG B:184 , LEU B:188 , GLN B:272 , GLN B:277 , ASP B:279 , HOH B:2306	BINDING SITE FOR RESIDUE GOL B1330
08	AC8	SOFTWARE	GLY B:62 , ARG B:63 , CYS B:66 , ARG B:102 , ASP B:104 , HOH B:2079	BINDING SITE FOR RESIDUE GOL B1331
09	AC9	SOFTWARE	PRO B:84 , ALA B:85 , ARG B:88 , GLN B:126 , HOH B:2307 , HOH B:2308	BINDING SITE FOR RESIDUE GOL B1332
10	BC1	SOFTWARE	GLU B:38 , LYS B:69 , ASP B:104 , LEU B:105 , ARG B:189 , TYR B:191 , HOH B:2042 , HOH B:2133	BINDING SITE FOR RESIDUE GOL B1333
11	BC2	SOFTWARE	ARG B:17 , VAL B:44 , ALA B:46 , ASN B:47 , PHE B:78 , GLU B:300 , GOL B:1328 , HOH B:2310 , HOH B:2311	BINDING SITE FOR RESIDUE GOL B1334
12	BC3	SOFTWARE	HIS B:125 , HIS B:128 , GLN B:129 , GLY B:157 , ILE B:159 , HOH B:2082	BINDING SITE FOR RESIDUE GOL B1335
13	BC4	SOFTWARE	HIS A:185 , HIS B:113 , GLU B:145 , GLU B:148 , HOH B:2143 , HOH B:2150 , HOH B:2312 , HOH B:2313	BINDING SITE FOR RESIDUE GOL B1336
14	BC5	SOFTWARE	TRP B:266 , HIS B:270 , VAL B:308 , ASP B:312 , HOH B:2246	BINDING SITE FOR RESIDUE GOL B1337

(no "SS Bond" information available for 1GVE)

(no "Cis Peptide Bond" information available for 1GVE)

(no "SAP(SNP)/Variant" information available for 1GVE)

(no "PROSITE Motif" information available for 1GVE)

Asymmetric/Biological Unit (7, 14)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENSRNOT00000024160	1	ENSRNOE00000171926	chr5:158139986-158140251	266	ARK73_RAT	1-68	68	2	A:4-68 B:4-68	65 65
1.2	ENSRNOT00000024160	2	ENSRNOE00000172095	chr5:158142713-158142900	188	ARK73_RAT	68-130	63	2	A:68-130 B:68-130	63 63
1.3	ENSRNOT00000024160	3	ENSRNOE00000172193	chr5:158143095-158143199	105	ARK73_RAT	131-165	35	2	A:131-165 B:131-165	35 35
1.4	ENSRNOT00000024160	4	ENSRNOE00000172302	chr5:158143412-158143508	97	ARK73_RAT	166-198	33	2	A:166-198 B:166-198	33 33
1.5	ENSRNOT00000024160	5	ENSRNOE00000172401	chr5:158143746-158143845	100	ARK73_RAT	198-231	34	2	A:198-231 B:198-208	34 11
1.6	ENSRNOT00000024160	6	ENSRNOE00000172489	chr5:158146101-158146230	130	ARK73_RAT	231-274	44	2	A:231-274 B:232-274	44 43
1.7	ENSRNOT00000024160	7	ENSRNOE00000172587	chr5:158147144-158147516	373	ARK73_RAT	275-327	53	2	A:275-327 B:275-327	53 53

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:324
 aligned with ARK73_RAT | P38918 from UniProtKB/Swiss-Prot  Length:327

    Alignment length:324
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323    
            ARK73_RAT     4 ARPATVLGAMEMGRRMDVTSSSASVRAFLQRGHTEIDTAFVYANGQSETILGDLGLGLGRSGCKVKIATKAAPMFGKTLKPADVRFQLETSLKRLQCPRVDLFYLHFPDHGTPIEETLQACHQLHQEGKFVELGLSNYVSWEVAEICTLCKKNGWIMPTVYQGMYNAITRQVETELFPCLRHFGLRFYAFNPLAGGLLTGRYKYQDKDGKNPESRFFGNPFSQLYMDRYWKEEHFNGIALVEKALKTTYGPTAPSMISAAVRWMYHHSQLKGTQGDAVILGMSSLEQLEQNLALVEEGPLEPAVVDAFDQAWNLVAHECPNYFR 327
               SCOP domains d1gvea_ A: Aflatoxin aldehyde reductase (akr7a1)                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 1gveA00 A:4-327 NADP-dependent oxidoreductase                                                                                                                                                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeee........hhhhhhhhhhhhhhh...eee...hhhhhhhhhhhh.............eeeeee........hhhhhhhhhhhhhhhh....eeeeee.......hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhhhhhhh.eeeee..hhhhhhhh..hhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh...hhhhh.eeee...hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.1  PDB: A:4-68 UniProt: 1-68 [INCOMPLETE]                 --------------------------------------------------------------Exon 1.3  PDB: A:131-165           Exon 1.4  PDB: A:166-198         --------------------------------Exon 1.6  PDB: A:231-274 UniProt: 231-274   Exon 1.7  PDB: A:275-327 UniProt: 275-327             Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------Exon 1.2  PDB: A:68-130 UniProt: 68-130                        -------------------------------------------------------------------Exon 1.5  PDB: A:198-231          ------------------------------------------------------------------------------------------------ Transcript 1 (2)
                 1gve A   4 ARPATVLGAMEMGRRMDVTSSSASVRAFLQRGHTEIDTAFVYANGQSETILGDLGLGLGRSGCKVKIATKAAPMFGKTLKPADVRFQLETSLKRLQCPRVDLFYLHFPDHGTPIEETLQACHQLHQEGKFVELGLSNYVSWEVAEICTLCKKNGWIMPTVYQGMYNAITRQVETELFPCLRHFGLRFYAFNPLAGGLLTGRYKYQDKDGKNPESRFFGNPFSQLYMDRYWKEEHFNGIALVEKALKTTYGPTAPSMISAAVRWMYHHSQLKGTQGDAVILGMSSLEQLEQNLALVEEGPLEPAVVDAFDQAWNLVAHECPNYFR 327
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323

Chain B from PDB  Type:PROTEIN  Length:301
 aligned with ARK73_RAT | P38918 from UniProtKB/Swiss-Prot  Length:327

    Alignment length:324
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323    
            ARK73_RAT     4 ARPATVLGAMEMGRRMDVTSSSASVRAFLQRGHTEIDTAFVYANGQSETILGDLGLGLGRSGCKVKIATKAAPMFGKTLKPADVRFQLETSLKRLQCPRVDLFYLHFPDHGTPIEETLQACHQLHQEGKFVELGLSNYVSWEVAEICTLCKKNGWIMPTVYQGMYNAITRQVETELFPCLRHFGLRFYAFNPLAGGLLTGRYKYQDKDGKNPESRFFGNPFSQLYMDRYWKEEHFNGIALVEKALKTTYGPTAPSMISAAVRWMYHHSQLKGTQGDAVILGMSSLEQLEQNLALVEEGPLEPAVVDAFDQAWNLVAHECPNYFR 327
               SCOP domains d1gveb_ B: Aflatoxin aldehyde reductase (akr7a1)                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 1gveB00 B:4-327 NADP-dependent oxidoreductase                                                                                                                                                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeee........hhhhhhhhhhhhhhh...eee...hhhhhhhhhhhhh............eeeeee........hhhhhhhhhhhhhhhhh...eeeeee.......hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhhhhhhh.eeeee..hhhhhhhh.....-----------------------..hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh...hhhhh.eeee...hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.1  PDB: B:4-68 UniProt: 1-68 [INCOMPLETE]                 --------------------------------------------------------------Exon 1.3  PDB: B:131-165           Exon 1.4  PDB: B:166-198         --------------------------------Exon 1.6  PDB: B:232-274 UniProt: 231-274   Exon 1.7  PDB: B:275-327 UniProt: 275-327             Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------Exon 1.2  PDB: B:68-130 UniProt: 68-130                        -------------------------------------------------------------------Exon 1.5  PDB: B:198-208          ------------------------------------------------------------------------------------------------ Transcript 1 (2)
                 1gve B   4 ARPATVLGAMEMGRRMDVTSSSASVRAFLQRGHTEIDTAFVYANGQSETILGDLGLGLGRSGCKVKIATKAAPMFGKTLKPADVRFQLETSLKRLQCPRVDLFYLHFPDHGTPIEETLQACHQLHQEGKFVELGLSNYVSWEVAEICTLCKKNGWIMPTVYQGMYNAITRQVETELFPCLRHFGLRFYAFNPLAGGLLTGRYKYQ-----------------------YWKEEHFNGIALVEKALKTTYGPTAPSMISAAVRWMYHHSQLKGTQGDAVILGMSSLEQLEQNLALVEEGPLEPAVVDAFDQAWNLVAHECPNYFR 327
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203    |    -         -       233       243       253       263       273       283       293       303       313       323    
                                                                                                                                                                                                                                      208                     232

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Asymmetric/Biological Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

)

Protein Domains( (-)

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Organisms( (-)

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Class: Alpha and beta proteins (a/b) (23833)

Fold: TIM beta/alpha-barrel (3956)

Superfamily: NAD(P)-linked oxidoreductase (286)

Family: Aldo-keto reductases (NADP) (251)

Protein domain: Aflatoxin aldehyde reductase (akr7a1) (1)

Norway rat (Rattus norvegicus) [TaxId: 10116] (1)

1a	d1gvea_	A:
1b	d1gveb_	B:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

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Topologies( (-)

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Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Barrel (2994)

Topology: TIM Barrel (2806)

Homologous Superfamily: NADP-dependent oxidoreductase (181)

Rat (Rattus norvegicus) (1)

1a	1gveA00	A:4-327
1b	1gveB00	B:4-327

(no "Pfam Domain" information available for 1GVE)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (ARK73_RAT | P38918)

molecular function
	GO:0004032	alditol:NADP+ 1-oxidoreductase activity	Catalysis of the reaction: an alditol + NADP+ = an aldose + NADPH + H+.
	GO:0004033	aldo-keto reductase (NADP) activity	Catalysis of the reaction: an alcohol + NADP+ = an aldehyde or a ketone + NADPH + H+.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0046223	aflatoxin catabolic process	The chemical reactions and pathways resulting in the breakdown of aflatoxin, a fungal metabolite found as a contaminant in moldy grains that induces liver cancer. Aflatoxin induces a G to T transversion at codon 249 of p53, leading to its inactivation. Aflatoxin is converted to a chemical carcinogen by P450.
	GO:0046222	aflatoxin metabolic process	The chemical reactions and pathways involving aflatoxin, a fungal metabolite found as a contaminant in moldy grains that induces liver cancer. Aflatoxin induces a G to T transversion at codon 249 of p53, leading to its inactivation. Aflatoxin is converted to a chemical carcinogen by P450.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0009636	response to toxic substance	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxic stimulus.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric/Biological Unit
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Description

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Ligands, Modified Residues, Ions (3, 14)

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