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1GVE
Asym. Unit
Info
Asym.Unit (228 KB)
Biol.Unit 1 (221 KB)
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(1)
Title
:
AFLATOXIN ALDEHYDE REDUCTASE (AKR7A1) FROM RAT LIVER
Authors
:
E. Kozma, E. Brown, E. M. Ellis, A. J. Lapthorn
Date
:
08 Feb 02 (Deposition) - 27 Jun 02 (Release) - 21 Sep 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.38
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Oxidoreductase, Aldo-Keto Reductase, Aflatoxin B1, Succinic Semialdehyde Oxidoreductase, Akr7 Family
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Kozma, E. Brown, E. M. Ellis, A. J. Lapthorn
The Crystal Structure Of Rat Liver Akr7A1: A Dimeric Member Of The Aldo-Keto Reductase Superfamily
J. Biol. Chem. V. 277 16285 2002
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 14)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
3a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CIT
1
Ligand/Ion
CITRIC ACID
2
GOL
12
Ligand/Ion
GLYCEROL
3
NAP
1
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
[
close Hetero Component info
]
Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:11 , ALA A:12 , MET A:13 , ARG A:18 , ASP A:40 , TYR A:45 , SER A:139 , ASN A:140 , GLN A:165 , PHE A:193 , ASN A:194 , PRO A:195 , LEU A:196 , ALA A:197 , GLY A:198 , GLY A:199 , ARG A:204 , SER A:217 , ARG A:218 , TYR A:228 , ILE A:260 , ILE A:282 , LEU A:283 , GLY A:284 , SER A:286 , GLN A:290 , GLN A:293 , ASN A:294 , ARG A:327 , CIT A:1331 , HOH A:2128 , HOH A:2131 , HOH A:2185 , HOH A:2186 , HOH A:2187
BINDING SITE FOR RESIDUE NAP A1328
02
AC2
SOFTWARE
MET A:13 , TYR A:45 , MET A:77 , HIS A:109 , PHE A:224 , TYR A:228 , ARG A:231 , ARG A:327 , NAP A:1328 , HOH A:2182
BINDING SITE FOR RESIDUE CIT A1331
03
AC3
SOFTWARE
HIS A:113 , GLU A:145 , GLU A:148 , HOH A:2072 , HOH A:2188 , HOH A:2189 , HOH A:2190 , HIS B:185
BINDING SITE FOR RESIDUE GOL A1329
04
AC4
SOFTWARE
PHE A:180 , ARG A:184 , LEU A:188 , GLN A:272 , ASP A:279 , HOH A:2116 , HOH A:2191
BINDING SITE FOR RESIDUE GOL A1330
05
AC5
SOFTWARE
MET B:77 , PHE B:78 , GOL B:1334
BINDING SITE FOR RESIDUE GOL B1328
06
AC6
SOFTWARE
ARG B:88 , PHE B:89 , GLU B:92 , THR B:93 , HOH B:2117 , HOH B:2305
BINDING SITE FOR RESIDUE GOL B1329
07
AC7
SOFTWARE
PHE B:180 , ARG B:184 , LEU B:188 , GLN B:272 , GLN B:277 , ASP B:279 , HOH B:2306
BINDING SITE FOR RESIDUE GOL B1330
08
AC8
SOFTWARE
GLY B:62 , ARG B:63 , CYS B:66 , ARG B:102 , ASP B:104 , HOH B:2079
BINDING SITE FOR RESIDUE GOL B1331
09
AC9
SOFTWARE
PRO B:84 , ALA B:85 , ARG B:88 , GLN B:126 , HOH B:2307 , HOH B:2308
BINDING SITE FOR RESIDUE GOL B1332
10
BC1
SOFTWARE
GLU B:38 , LYS B:69 , ASP B:104 , LEU B:105 , ARG B:189 , TYR B:191 , HOH B:2042 , HOH B:2133
BINDING SITE FOR RESIDUE GOL B1333
11
BC2
SOFTWARE
ARG B:17 , VAL B:44 , ALA B:46 , ASN B:47 , PHE B:78 , GLU B:300 , GOL B:1328 , HOH B:2310 , HOH B:2311
BINDING SITE FOR RESIDUE GOL B1334
12
BC3
SOFTWARE
HIS B:125 , HIS B:128 , GLN B:129 , GLY B:157 , ILE B:159 , HOH B:2082
BINDING SITE FOR RESIDUE GOL B1335
13
BC4
SOFTWARE
HIS A:185 , HIS B:113 , GLU B:145 , GLU B:148 , HOH B:2143 , HOH B:2150 , HOH B:2312 , HOH B:2313
BINDING SITE FOR RESIDUE GOL B1336
14
BC5
SOFTWARE
TRP B:266 , HIS B:270 , VAL B:308 , ASP B:312 , HOH B:2246
BINDING SITE FOR RESIDUE GOL B1337
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(7, 14)
Info
All Exons
Exon 1.1 (A:4-68 | B:4-68)
Exon 1.2 (A:68-130 | B:68-130)
Exon 1.3 (A:131-165 | B:131-165)
Exon 1.4 (A:166-198 | B:166-198)
Exon 1.5 (A:198-231 | B:198-208)
Exon 1.6 (A:231-274 | B:232-274)
Exon 1.7 (A:275-327 | B:275-327)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7
8: Boundary 1.7/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000024160
1
ENSRNOE00000171926
chr5:
158139986-158140251
266
ARK73_RAT
1-68
68
2
A:4-68
B:4-68
65
65
1.2
ENSRNOT00000024160
2
ENSRNOE00000172095
chr5:
158142713-158142900
188
ARK73_RAT
68-130
63
2
A:68-130
B:68-130
63
63
1.3
ENSRNOT00000024160
3
ENSRNOE00000172193
chr5:
158143095-158143199
105
ARK73_RAT
131-165
35
2
A:131-165
B:131-165
35
35
1.4
ENSRNOT00000024160
4
ENSRNOE00000172302
chr5:
158143412-158143508
97
ARK73_RAT
166-198
33
2
A:166-198
B:166-198
33
33
1.5
ENSRNOT00000024160
5
ENSRNOE00000172401
chr5:
158143746-158143845
100
ARK73_RAT
198-231
34
2
A:198-231
B:198-208
34
11
1.6
ENSRNOT00000024160
6
ENSRNOE00000172489
chr5:
158146101-158146230
130
ARK73_RAT
231-274
44
2
A:231-274
B:232-274
44
43
1.7
ENSRNOT00000024160
7
ENSRNOE00000172587
chr5:
158147144-158147516
373
ARK73_RAT
275-327
53
2
A:275-327
B:275-327
53
53
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1gvea_ (A:)
1b: SCOP_d1gveb_ (B:)
View:
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Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
NAD(P)-linked oxidoreductase
(286)
Family
:
Aldo-keto reductases (NADP)
(251)
Protein domain
:
Aflatoxin aldehyde reductase (akr7a1)
(1)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
1a
d1gvea_
A:
1b
d1gveb_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1gveA00 (A:4-327)
1b: CATH_1gveB00 (B:4-327)
View:
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Classes
(
)
(
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Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
NADP-dependent oxidoreductase
(181)
Rat (Rattus norvegicus)
(1)
1a
1gveA00
A:4-327
1b
1gveB00
B:4-327
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Atom Selection
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Nucleic
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
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