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(-) Description

Title :  DIHYDROPYRIMIDINE DEHYDROGENASE (DPD) FROM PIG, BINARY COMPLEX WITH 5-IODOURACIL
 
Authors :  D. Dobritzsch, S. Ricagno, G. Schneider, K. D. Schnackerz, Y. Lindqvist
Date :  15 Jan 02  (Deposition) - 11 Apr 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Electron Transfer, Flavin, Iron-Sulfur Clusters, Pyrimidine Catabolism, 5-Fluorouracil Degradation, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Dobritzsch, S. Ricagno, G. Schneider, K. D. Schnackerz, Y. Lindqvist
Crystal Structure Of The Productive Ternary Complex Of Dihydropyrimidine Dehydrogenase With Nadph And 5-Iodouracil. Implications For Mechanism Of Inhibition And Electron Transfer
J. Biol. Chem. V. 277 13155 2002
PubMed-ID: 11796730  |  Reference-DOI: 10.1074/JBC.M111877200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DIHYDROPYRIMIDINE DEHYDROGENASE
    Chains: A, B, C, D
    EC Number: 1.3.1.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSE420
    Expression System Strain: DH5A
    Expression System Taxid: 562
    Organ: LIVER
    Organism Common: PIG
    Organism Scientific: SUS SCROFA
    Organism Taxid: 9823
    Synonym: DPD, DHPDHASE, DIHYDROURACIL DEHYDROGENASE, DIHYDROTHYMINE DEHYDROGENASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 28)

Asymmetric Unit (4, 28)
No.NameCountTypeFull Name
1FAD4Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2FMN4Ligand/IonFLAVIN MONONUCLEOTIDE
3IUR4Ligand/Ion5-IODOURACIL
4SF416Ligand/IonIRON/SULFUR CLUSTER
Biological Unit 1 (4, 14)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2FMN2Ligand/IonFLAVIN MONONUCLEOTIDE
3IUR2Ligand/Ion5-IODOURACIL
4SF48Ligand/IonIRON/SULFUR CLUSTER
Biological Unit 2 (4, 14)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2FMN2Ligand/IonFLAVIN MONONUCLEOTIDE
3IUR2Ligand/Ion5-IODOURACIL
4SF48Ligand/IonIRON/SULFUR CLUSTER

(-) Sites  (28, 28)

Asymmetric Unit (28, 28)
No.NameEvidenceResiduesDescription
01AC1SOFTWARECYS A:91 , PRO A:92 , ILE A:97 , ASN A:120 , CYS A:130 , THR A:132 , CYS A:136 , GLN A:156BINDING SITE FOR RESIDUE SF4 A1026
02AC2SOFTWARECYS A:79 , LEU A:80 , LYS A:81 , CYS A:82 , PRO A:86 , CYS A:87 , CYS A:140 , ASN A:141 , LEU A:142 , ILE A:150 , ILE A:152BINDING SITE FOR RESIDUE SF4 A1027
03AC3SOFTWAREILE A:948 , CYS A:953 , ILE A:954 , ASN A:955 , CYS A:956 , GLY A:957 , LYS A:958 , CYS A:959 , CYS A:996 , PRO A:997 , CYS A:1001 , ILE A:1002BINDING SITE FOR RESIDUE SF4 A1028
04AC4SOFTWARECYS A:963 , TYR A:968 , ILE A:971 , VAL A:982 , CYS A:986 , THR A:987 , GLY A:988 , CYS A:989 , THR A:990 , CYS A:992 , MET A:1004BINDING SITE FOR RESIDUE SF4 A1029
05AC5SOFTWAREALA A:549 , SER A:550 , ALA A:551 , LYS A:574 , THR A:575 , ILE A:590 , ASN A:609 , GLU A:611 , ASN A:668 , LYS A:709 , THR A:735 , ASN A:736 , SER A:766 , GLY A:767 , THR A:793 , GLY A:794 , GLY A:795 , CYS A:816 , SER A:817 , GLN A:820 , IUR A:1034 , HOH A:2823 , HOH A:3162 , HOH A:3163BINDING SITE FOR RESIDUE FMN A1030
06AC6SOFTWAREVAL A:129 , PRO A:131 , GLY A:194 , GLY A:196 , PRO A:197 , ALA A:198 , GLU A:218 , LYS A:219 , GLN A:220 , GLY A:225 , LEU A:226 , GLU A:230 , ARG A:235 , SER A:260 , LEU A:261 , GLY A:282 , ILE A:283 , GLY A:284 , PRO A:286 , LEU A:310 , THR A:343 , ASP A:346 , GLY A:480 , ASP A:481 , ASN A:487 , THR A:488 , THR A:489 , SER A:492 , HOH A:2376 , HOH A:2670 , HOH A:3164 , HOH A:3165 , HOH A:3166 , HOH A:3167 , HOH A:3168 , HOH A:3169 , HOH A:3170BINDING SITE FOR RESIDUE FAD A1031
07AC7SOFTWAREASN A:609 , GLU A:611 , ASN A:668 , SER A:670 , ASN A:736 , THR A:737 , FMN A:1030 , HOH A:2798BINDING SITE FOR RESIDUE IUR A1034
08AC8SOFTWARECYS B:91 , PRO B:92 , LEU B:95 , ILE B:97 , ASN B:120 , CYS B:130 , THR B:132 , CYS B:136 , GLN B:156BINDING SITE FOR RESIDUE SF4 B1026
09AC9SOFTWARECYS B:79 , LEU B:80 , LYS B:81 , CYS B:82 , PRO B:86 , CYS B:87 , CYS B:140 , ASN B:141 , LEU B:142 , ILE B:150 , ILE B:152BINDING SITE FOR RESIDUE SF4 B1027
10BC1SOFTWAREILE B:948 , CYS B:953 , ILE B:954 , CYS B:956 , GLY B:957 , LYS B:958 , CYS B:959 , CYS B:996 , PRO B:997 , ILE B:998 , CYS B:1001 , ILE B:1002BINDING SITE FOR RESIDUE SF4 B1028
11BC2SOFTWARECYS B:963 , TYR B:968 , ILE B:971 , VAL B:982 , CYS B:986 , THR B:987 , GLY B:988 , CYS B:989 , THR B:990 , CYS B:992BINDING SITE FOR RESIDUE SF4 B1029
12BC3SOFTWAREALA B:549 , SER B:550 , ALA B:551 , LYS B:574 , THR B:575 , ILE B:590 , ASN B:609 , GLU B:611 , ASN B:668 , LYS B:709 , THR B:735 , ASN B:736 , THR B:737 , SER B:766 , GLY B:767 , THR B:793 , GLY B:794 , GLY B:795 , CYS B:816 , SER B:817 , GLN B:820 , IUR B:1034 , HOH B:2857 , HOH B:2973 , HOH B:3211 , HOH B:3212BINDING SITE FOR RESIDUE FMN B1030
13BC4SOFTWAREVAL B:129 , PRO B:131 , GLY B:194 , GLY B:196 , PRO B:197 , ALA B:198 , GLU B:218 , LYS B:219 , GLN B:220 , GLY B:225 , LEU B:226 , GLU B:230 , ARG B:235 , SER B:260 , LEU B:261 , GLY B:282 , ILE B:283 , GLY B:284 , PRO B:286 , LEU B:310 , THR B:343 , ASP B:346 , GLY B:480 , ASP B:481 , ASN B:487 , THR B:488 , THR B:489 , SER B:492 , HOH B:2400 , HOH B:2406 , HOH B:3213 , HOH B:3214 , HOH B:3215 , HOH B:3216 , HOH B:3217 , HOH B:3218 , HOH B:3219 , HOH B:3220BINDING SITE FOR RESIDUE FAD B1031
14BC5SOFTWAREASN B:609 , GLU B:611 , ASN B:668 , SER B:670 , ASN B:736 , THR B:737 , FMN B:1030 , HOH B:2825 , HOH B:3212BINDING SITE FOR RESIDUE IUR B1034
15BC6SOFTWARECYS C:91 , PRO C:92 , LEU C:95 , ILE C:97 , ASN C:120 , CYS C:130 , THR C:132 , LEU C:135 , CYS C:136 , GLN C:156BINDING SITE FOR RESIDUE SF4 C1026
16BC7SOFTWARECYS C:79 , LEU C:80 , LYS C:81 , CYS C:82 , PRO C:86 , CYS C:87 , CYS C:140 , ASN C:141 , LEU C:142 , ILE C:150 , ILE C:152BINDING SITE FOR RESIDUE SF4 C1027
17BC8SOFTWAREILE C:948 , CYS C:953 , ILE C:954 , ASN C:955 , CYS C:956 , GLY C:957 , LYS C:958 , CYS C:959 , CYS C:996 , PRO C:997 , CYS C:1001 , ILE C:1002BINDING SITE FOR RESIDUE SF4 C1028
18BC9SOFTWARECYS C:963 , TYR C:968 , ILE C:971 , VAL C:982 , CYS C:986 , THR C:987 , GLY C:988 , CYS C:989 , THR C:990 , CYS C:992BINDING SITE FOR RESIDUE SF4 C1029
19CC1SOFTWAREALA C:549 , SER C:550 , ALA C:551 , LYS C:574 , THR C:575 , ILE C:590 , ASN C:609 , GLU C:611 , ASN C:668 , LYS C:709 , THR C:735 , ASN C:736 , SER C:766 , GLY C:767 , THR C:793 , GLY C:794 , GLY C:795 , CYS C:816 , SER C:817 , GLN C:820 , IUR C:1034 , HOH C:2821 , HOH C:2948 , HOH C:3181BINDING SITE FOR RESIDUE FMN C1030
20CC2SOFTWAREVAL C:129 , PRO C:131 , GLY C:194 , GLY C:196 , PRO C:197 , ALA C:198 , GLU C:218 , LYS C:219 , GLN C:220 , GLY C:225 , LEU C:226 , GLU C:230 , ARG C:235 , SER C:260 , LEU C:261 , GLY C:282 , ILE C:283 , GLY C:284 , LEU C:310 , THR C:343 , ASP C:346 , GLY C:480 , ASP C:481 , ASN C:487 , THR C:488 , THR C:489 , SER C:492 , HOH C:2370 , HOH C:3182 , HOH C:3183 , HOH C:3184 , HOH C:3185 , HOH C:3186 , HOH C:3187 , HOH C:3188 , HOH C:3189BINDING SITE FOR RESIDUE FAD C1031
21CC3SOFTWAREASN C:609 , GLU C:611 , ASN C:668 , SER C:670 , ASN C:736 , THR C:737 , FMN C:1030BINDING SITE FOR RESIDUE IUR C1034
22CC4SOFTWARECYS D:91 , PRO D:92 , ILE D:97 , ASN D:120 , CYS D:130 , THR D:132 , CYS D:136 , GLN D:156BINDING SITE FOR RESIDUE SF4 D1026
23CC5SOFTWARECYS D:79 , LEU D:80 , LYS D:81 , CYS D:82 , PRO D:86 , CYS D:87 , CYS D:140 , ASN D:141 , LEU D:142 , ILE D:150 , ILE D:152BINDING SITE FOR RESIDUE SF4 D1027
24CC6SOFTWAREILE D:948 , CYS D:953 , ILE D:954 , CYS D:956 , GLY D:957 , LYS D:958 , CYS D:959 , CYS D:996 , PRO D:997 , CYS D:1001 , ILE D:1002BINDING SITE FOR RESIDUE SF4 D1028
25CC7SOFTWARECYS D:963 , TYR D:968 , ILE D:971 , CYS D:986 , THR D:987 , GLY D:988 , CYS D:989 , THR D:990 , CYS D:992BINDING SITE FOR RESIDUE SF4 D1029
26CC8SOFTWAREALA D:549 , SER D:550 , ALA D:551 , LYS D:574 , THR D:575 , ILE D:590 , ASN D:609 , GLU D:611 , ASN D:668 , LYS D:709 , THR D:735 , ASN D:736 , SER D:766 , GLY D:767 , THR D:793 , GLY D:794 , GLY D:795 , CYS D:816 , SER D:817 , GLN D:820 , IUR D:1034 , HOH D:2895 , HOH D:3053 , HOH D:3261BINDING SITE FOR RESIDUE FMN D1030
27CC9SOFTWAREVAL D:129 , PRO D:131 , GLY D:194 , GLY D:196 , PRO D:197 , ALA D:198 , GLU D:218 , LYS D:219 , GLN D:220 , GLY D:225 , LEU D:226 , GLU D:230 , ARG D:235 , SER D:260 , LEU D:261 , GLY D:282 , ILE D:283 , GLY D:284 , LEU D:310 , THR D:343 , ASP D:346 , GLY D:480 , ASP D:481 , ASN D:487 , THR D:488 , THR D:489 , SER D:492 , HOH D:2426 , HOH D:2736 , HOH D:3262 , HOH D:3263 , HOH D:3264 , HOH D:3265 , HOH D:3266 , HOH D:3267 , HOH D:3268BINDING SITE FOR RESIDUE FAD D1031
28DC1SOFTWAREASN D:609 , GLU D:611 , ASN D:668 , SER D:670 , ASN D:736 , THR D:737 , FMN D:1030BINDING SITE FOR RESIDUE IUR D1034

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1GTE)

(-) Cis Peptide Bonds  (16, 16)

Asymmetric Unit
No.Residues
1Ser A:452 -Pro A:453
2Ser A:587 -Pro A:588
3Ala A:734 -Thr A:735
4Trp A:751 -Pro A:752
5Ser B:452 -Pro B:453
6Ser B:587 -Pro B:588
7Ala B:734 -Thr B:735
8Trp B:751 -Pro B:752
9Ser C:452 -Pro C:453
10Ser C:587 -Pro C:588
11Ala C:734 -Thr C:735
12Trp C:751 -Pro C:752
13Ser D:452 -Pro D:453
14Ser D:587 -Pro D:588
15Ala D:734 -Thr D:735
16Trp D:751 -Pro D:752

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1GTE)

(-) PROSITE Motifs  (2, 16)

Asymmetric Unit (2, 16)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
14FE4S_FER_2PS51379 4Fe-4S ferredoxin-type iron-sulfur binding domain profile.DPYD_PIG69-100
 
 
 
944-976
 
 
 
978-1007
 
 
 		  12A:69-100
B:69-100
C:69-100
D:69-100
A:944-976
B:944-976
C:944-976
D:944-976
A:978-1007
B:978-1007
C:978-1007
D:978-1007
24FE4S_FER_1PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature.DPYD_PIG986-997
 
 
 		  4A:986-997
B:986-997
C:986-997
D:986-997
Biological Unit 1 (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
14FE4S_FER_2PS51379 4Fe-4S ferredoxin-type iron-sulfur binding domain profile.DPYD_PIG69-100
 
 
 
944-976
 
 
 
978-1007
 
 
 		  6A:69-100
B:69-100
-
-
A:944-976
B:944-976
-
-
A:978-1007
B:978-1007
-
-
24FE4S_FER_1PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature.DPYD_PIG986-997
 
 
 		  2A:986-997
B:986-997
-
-
Biological Unit 2 (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
14FE4S_FER_2PS51379 4Fe-4S ferredoxin-type iron-sulfur binding domain profile.DPYD_PIG69-100
 
 
 
944-976
 
 
 
978-1007
 
 
 		  6-
-
C:69-100
D:69-100
-
-
C:944-976
D:944-976
-
-
C:978-1007
D:978-1007
24FE4S_FER_1PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature.DPYD_PIG986-997
 
 
 		  2-
-
C:986-997
D:986-997

(-) Exons   (0, 0)

(no "Exon" information available for 1GTE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:1005
 aligned with DPYD_PIG | Q28943 from UniProtKB/Swiss-Prot  Length:1025

    Alignment length:1016
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961       971       981       991      1001      1011      
            DPYD_PIG      2 APVLSKDVADIESILALNPRTQSHAALHSTLAKKLDKKHWKRNPDKNCFHCEKLENNFGDIKHTTLGERGALREAMRCLKCADAPCQKSCPTHLDIKSFITSISNKNYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTPVDLVDISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKSIEELQGWDGQSPGTESHQKGKPVPRIAELMGKKLPNFGPYLEQRKKIIAEEKMRLKEQNAAFPPLERKPFIPKKPIPAIKDVIGKALQYLGTFGELSNIEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCTLCLSVCPIIDCIRMVSRTTPYEPKRGL 1017
               SCOP domains d1gtea1 A:2-183 Dihydropyrimidine dehydrogenase, N-terminal domain                                                                                                                    d1gtea4 A:184-287,A:441-532 Dihydropyrimidine dehydrogenase, domain 2                                   d1gtea3 A:288-440 Dihydropyrimidine dehydrogenase, domain 3                                                                                              d1gtea4 A:184-287,A:441-532 Dihydropyrimidine dehydrogenase, domain 2                       d1gtea2 A:533-844 Dihydropyrimidine dehydrogenase, domain 4                                                                                                                                                                                                                                                             d1gtea5 A:845-1017 Dihydropyrimidine dehydrogenase, C-ter      minal domain                                                                                                   SCOP domains
               CATH domains 1gteA01 A:2-26,A:934-10171gteA02 A:27-183 Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2                                                                                   1gteA03 A:184-287,A:441-532  [code=3.50.50.60, no name defined]                                         1gteA04 A:288-440  [code=3.50.50.60, no name defined]                                                                                                    1gteA03 A:184-287,A:441-532  [code=3.50.50.60, no name defined]                             1gteA05 A:533-844 Aldolase class I                                                                                                                                                                                                                                                                                      ---------------------------------------------------------      --------------------------1gteA01 A:2-26,A:934-1017  [code=3.30.70.20, no name defined]                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhh.............hhhhhhhhhhhhh.........................hhhhhhhhhhhh.....hhhhhh.....hhhhhhhhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh..........hhhhhhhhhhh.eeee..hhhhhhhhhhhhhh....eeeee......hhhhhh......hhhhhhhhhhhhhh...eeee.........hhhhhhhh...eeee.....ee..hhhhh.......eeehhhhhhhhhhhhh...............eeeee..hhhhhhhhhhhhhh...eeeee...hhhhh..hhhhhhhhhhh..eee..eeeeeeeee..eeeeeeeeeeee.....eeeeeeeeeeee..eeee...ee..hhhhhhhh........................eee.hhhhh...hhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhh...eee..eee...eee..hhhhhhhhhhhhhhhhh..eee.....hhhhh.......eee..............eee.......hhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhh...eeeee......-----....hhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhh..eeee...eee......................eeeehhhhhhhhhhhhhhhhhhh....eeee....hhhhhhhhhhh...eeeehhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...........ee..ee..............hhhhhhhhhhhhhhhhhhhhhh.------............hhhhhh..hhhh..hhhhh.....eeeee........hhhhhhhhhhh...eee......eee.......hhhhhhh.....eeeee........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------------------------------------------------------------4FE4S_FER_2  PDB: A:69-100      ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------4FE4S_FER_2  PDB: A:944-976      -4FE4S_FER_2  PDB: A:978-1007  ---------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------4FE4S_FER_1 -------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1gte A    2 APVLSKDVADIESILALNPRTQSHAALHSTLAKKLDKKHWKRNPDKNCFHCEKLENNFDDIKHTTLGERGALREAMRCLKCADAPCQKSCPTHLDIKSFITSISNKNYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTPVDLVDISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHG-----MGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKSIEELQGWDGQSPGTESHQKGKPVPRIAELMGKKLPNFGPYLEQRKKIIAEEKMRLKEQN------ERKPFIPKKPIPAIKDVIGKALQYLGTFGELSNIEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCTLCLSVCPIIDCIRMVSRTTPYEPKRGL 1017
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671  |    681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901      |911       921       931       941       951       961       971       981       991      1001      1011      
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          674   680                                                                                                                                                                                                                          901    908                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:1005
 aligned with DPYD_PIG | Q28943 from UniProtKB/Swiss-Prot  Length:1025

    Alignment length:1017
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961       971       981       991      1001      1011       
            DPYD_PIG      2 APVLSKDVADIESILALNPRTQSHAALHSTLAKKLDKKHWKRNPDKNCFHCEKLENNFGDIKHTTLGERGALREAMRCLKCADAPCQKSCPTHLDIKSFITSISNKNYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTPVDLVDISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKSIEELQGWDGQSPGTESHQKGKPVPRIAELMGKKLPNFGPYLEQRKKIIAEEKMRLKEQNAAFPPLERKPFIPKKPIPAIKDVIGKALQYLGTFGELSNIEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCTLCLSVCPIIDCIRMVSRTTPYEPKRGLP 1018
               SCOP domains d1gteb1 B:2-183 Dihydropyrimidine dehydrogenase, N-terminal domain                                                                                                                    d1gteb4 B:184-287,B:441-532 Dihydropyrimidine dehydrogenase, domain 2                                   d1gteb3 B:288-440 Dihydropyrimidine dehydrogenase, domain 3                                                                                              d1gteb4 B:184-287,B:441-532 Dihydropyrimidine dehydrogenase, domain 2                       d1gteb2 B:533-844 Dihydropyrimidine dehydrogenase, domain 4                                                                                                                                                                                                                                                             d1gteb5 B:845-1018 Dihydropyrimidine dehydrogenase, C-ter      minal domain                                                                                                    SCOP domains
               CATH domains 1gteB01 B:2-26,B:934-10181gteB02 B:27-183 Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2                                                                                   1gteB03 B:184-287,B:441-532  [code=3.50.50.60, no name defined]                                         1gteB04 B:288-440  [code=3.50.50.60, no name defined]                                                                                                    1gteB03 B:184-287,B:441-532  [code=3.50.50.60, no name defined]                             1gteB05 B:533-844 Aldolase class I                                                                                                                                                                                                                                                                                      ---------------------------------------------------------      --------------------------1gteB01 B:2-26,B:934-1018  [code=3.30.70.20, no name defined]                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhh.............hhhhhhhhhhhhh.........................hhhhhhhhhhhh.....hhhhhh.....hhhhhhhhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh..........hhhhhhhhhhh.eeee..hhhhhhhhhhhhhhh...eeeee......hhhhhh......hhhhhhhhhhhhhh...eeee.........hhhhhhhh...eeee.....ee..hhhhh.......eeehhhhhhhhhhhhh...............eeeee..hhhhhhhhhhhhhh...eeeee...hhhhh..hhhhhhhhhhh..eee..eeeeeeeee..eeeeeeeeeeeee..eeeeeeeeeeeeee..eeee...ee..hhhhhhhh........................eee.hhhhh...hhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhh...eee..eee...eee..hhhhhhhhhhhhhhhhh..eee.....hhhhh.......eee..............eee.......hhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhh...eeeee.....------....hhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhh...eeee...eee......................eeeehhhhhhhhhhhhhhhhhhh....eeee....hhhhhhhhhhh...eeeehhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...........ee..ee..............hhhhhhhhhhhhhhhhhhhhhh.------............hhhhhh..hhhh..hhhhh.....eeeee........hhhhhhhhhhh...eee......eee.......hhhhhhh.....eeeee............ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------------------------------------------------------------4FE4S_FER_2  PDB: B:69-100      ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------4FE4S_FER_2  PDB: B:944-976      -4FE4S_FER_2  PDB: B:978-1007  ----------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------4FE4S_FER_1 --------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1gte B    2 APVLSKDVADIESILALNPRTQSHAALHSTLAKKLDKKHWKRNPDKNCFHCEKLENNFDDIKHTTLGERGALREAMRCLKCADAPCQKSCPTHLDIKSFITSISNKNYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTPVDLVDISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPH------MGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKSIEELQGWDGQSPGTESHQKGKPVPRIAELMGKKLPNFGPYLEQRKKIIAEEKMRLKEQN------ERKPFIPKKPIPAIKDVIGKALQYLGTFGELSNIEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCTLCLSVCPIIDCIRMVSRTTPYEPKRGLP 1018
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671 |     681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901      |911       921       931       941       951       961       971       981       991      1001      1011       
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         673    680                                                                                                                                                                                                                          901    908                                                                                                              


Chain C from PDB  Type:PROTEIN  Length:1010
 aligned with DPYD_PIG | Q28943 from UniProtKB/Swiss-Prot  Length:1025

    Alignment length:1016
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961       971       981       991      1001      1011      
            DPYD_PIG      2 APVLSKDVADIESILALNPRTQSHAALHSTLAKKLDKKHWKRNPDKNCFHCEKLENNFGDIKHTTLGERGALREAMRCLKCADAPCQKSCPTHLDIKSFITSISNKNYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTPVDLVDISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKSIEELQGWDGQSPGTESHQKGKPVPRIAELMGKKLPNFGPYLEQRKKIIAEEKMRLKEQNAAFPPLERKPFIPKKPIPAIKDVIGKALQYLGTFGELSNIEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCTLCLSVCPIIDCIRMVSRTTPYEPKRGL 1017
               SCOP domains d1gtec1 C:2-183 Dihydropyrimidine dehydrogenase, N-terminal domain                                                                                                                    d1gtec4 C:184-287,C:441-532 Dihydropyrimidine dehydrogenase, domain 2                                   d1gtec3 C:288-440 Dihydropyrimidine dehydrogenase, domain 3                                                                                              d1gtec4 C:184-287,C:441-532 Dihydropyrimidine dehydrogenase, domain 2                       d1gtec2 C:533-844 Dihydropyrimidine dehydrogenase, domain 4                                                                                                                                                                                                                                                             d1gtec5 C:845-1017 Dihydropyrimidine dehydrogenase, C-terminal domain                                                                                                         SCOP domains
               CATH domains 1gteC01 C:2-26,C:934-10171gteC02 C:27-183 Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2                                                                                   1gteC03 C:184-287,C:441-532  [code=3.50.50.60, no name defined]                                         1gteC04 C:288-440  [code=3.50.50.60, no name defined]                                                                                                    1gteC03 C:184-287,C:441-532  [code=3.50.50.60, no name defined]                             1gteC05 C:533-844 Aldolase class I                                                                                                                                                                                                                                                                                      -----------------------------------------------------------------------------------------1gteC01 C:2-26,C:934-1017  [code=3.30.70.20, no name defined]                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhh.............hhhhhhhhhhhhh.........................hhhhhhhhhhhh.....hhhhhh.....hhhhhhhhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh..........hhhhhhhhhhh.eeee..hhhhhhhhhhhhhhh...eeeee......hhhhhh......hhhhhhhhhhhhhh...eeee.........hhhhhhhh...eeee.....ee..hhhhh.......eeehhhhhhhhhhhhh...............eeeee..hhhhhhhhhhhhhh...eeeee...hhhhh..hhhhhhhhhhh..eee..eeeeeeeee..eeeeeeeeeeee.....eeeeeeeeeeee..eeee...ee..hhhhhhhh........................eee.hhhhh...hhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhh...eee..eee...eee..hhhhhhhhhhhhhhhhh..eee.....hhhhh.......eee..............eee.......hhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhh...eeeee.......------..hhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhh...eeee...eee......................eeeehhhhhhhhhhhhhhhhhhh....eeee....hhhhhhhhhhh...eeeehhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...........ee..ee..............hhhhhhhhhhhhhhhhhhhh.....................hhhhhh..hhhh..hhhhh.....eeeee........hhhhhhhhhhh...eee......eee.......hhhhhhh.....eeeee........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------------------------------------------------------------4FE4S_FER_2  PDB: C:69-100      ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------4FE4S_FER_2  PDB: C:944-976      -4FE4S_FER_2  PDB: C:978-1007  ---------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------4FE4S_FER_1 -------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1gte C    2 APVLSKDVADIESILALNPRTQSHAALHSTLAKKLDKKHWKRNPDKNCFHCEKLENNFDDIKHTTLGERGALREAMRCLKCADAPCQKSCPTHLDIKSFITSISNKNYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTPVDLVDISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGM------LACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKSIEELQGWDGQSPGTESHQKGKPVPRIAELMGKKLPNFGPYLEQRKKIIAEEKMRLKEQNAAFPPLERKPFIPKKPIPAIKDVIGKALQYLGTFGELSNIEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCTLCLSVCPIIDCIRMVSRTTPYEPKRGL 1017
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671   |     -|      691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961       971       981       991      1001      1011      
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           675    682                                                                                                                                                                                                                                                                                                                                               


Chain D from PDB  Type:PROTEIN  Length:1014
 aligned with DPYD_PIG | Q28943 from UniProtKB/Swiss-Prot  Length:1025

    Alignment length:1018
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961       971       981       991      1001      1011        
            DPYD_PIG      2 APVLSKDVADIESILALNPRTQSHAALHSTLAKKLDKKHWKRNPDKNCFHCEKLENNFGDIKHTTLGERGALREAMRCLKCADAPCQKSCPTHLDIKSFITSISNKNYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTPVDLVDISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKSIEELQGWDGQSPGTESHQKGKPVPRIAELMGKKLPNFGPYLEQRKKIIAEEKMRLKEQNAAFPPLERKPFIPKKPIPAIKDVIGKALQYLGTFGELSNIEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCTLCLSVCPIIDCIRMVSRTTPYEPKRGLPL 1019
               SCOP domains d1gted1 D:2-183 Dihydropyrimidine dehydrogenase, N-terminal domain                                                                                                                    d1gted4 D:184-287,D:441-532 Dihydropyrimidine dehydrogenase, domain 2                                   d1gted3 D:288-440 Dihydropyrimidine dehydrogenase, domain 3                                                                                              d1gted4 D:184-287,D:441-532 Dihydropyrimidine dehydrogenase, domain 2                       d1gted2 D:533-844 Dihydropyrimidine dehydrogenase, domain 4                                                                                                                                                                                                                                                             d1gted5 D:845-1019 Dihydropyrimidine dehydrogenase, C-term    inal domain                                                                                                       SCOP domains
               CATH domains 1gteD01 D:2-26,D:934-10191gteD02 D:27-183 Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2                                                                                   1gteD03 D:184-287,D:441-532  [code=3.50.50.60, no name defined]                                         1gteD04 D:288-440  [code=3.50.50.60, no name defined]                                                                                                    1gteD03 D:184-287,D:441-532  [code=3.50.50.60, no name defined]                             1gteD05 D:533-844 Aldolase class I                                                                                                                                                                                                                                                                                      -----------------------------------------------------------------------------------------1gteD01 D:2-26,D:934-1019  [code=3.30.70.20, no name defined]                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhh.............hhhhhhhhhhhhh.........................hhhhhhhhhhhh.....hhhhhh.....hhhhhhhhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh..........hhhhhhhhhhh.eeee..hhhhhhhhhhhhhhh...eeeee......hhhhhh......hhhhhhhhhhhhhh...eeee.........hhhhhhhh...eeee.....ee..hhhhh.......eeehhhhhhhhhhhhh...............eeeee..hhhhhhhhhhhhhh...eeeee...hhhhh..hhhhhhhhhhh..eee..eeeeeeeee..eeeeeeeeeeeee...eeeeeeeeeeeee..eeee...ee..hhhhhhhh........................eee.hhhhh...hhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhh...eee..eee...eee..hhhhhhhhhhhhhhhhh..eee.....hhhhh.......eee..............eee.......hhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhh...eeeee...............hhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhh..eeee...eee......................eeeehhhhhhhhhhhhhhhhhhh....eeee....hhhhhhhhhhh...eeeehhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...........ee..ee..............hhhhhhhhhhhhhhhhhhhhh...----.............hhhhhh..hhhh..hhhhh.....eeeee........hhhhhhhhhhh...eee......eee.......hhhhhhh.....eeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------------------------------------------------------------4FE4S_FER_2  PDB: D:69-100      ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------4FE4S_FER_2  PDB: D:944-976      -4FE4S_FER_2  PDB: D:978-1007  ------------ PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------4FE4S_FER_1 ---------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1gte D    2 APVLSKDVADIESILALNPRTQSHAALHSTLAKKLDKKHWKRNPDKNCFHCEKLENNFDDIKHTTLGERGALREAMRCLKCADAPCQKSCPTHLDIKSFITSISNKNYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTPVDLVDISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKSIEELQGWDGQSPGTESHQKGKPVPRIAELMGKKLPNFGPYLEQRKKIIAEEKMRLKEQNA----LERKPFIPKKPIPAIKDVIGKALQYLGTFGELSNIEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCTLCLSVCPIIDCIRMVSRTTPYEPKRGLPL 1019
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901|    | 911       921       931       941       951       961       971       981       991      1001      1011        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              902  907
   Legend:   → Mismatch (orange background)
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 Classification and Annotation

(-) SCOP Domains  (5, 20)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (4, 20)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 2-Layer Sandwich (8480)
(-)
Topology: Alpha-Beta Plaits (1688)
(-)
Homologous Superfamily: [code=3.30.70.20, no name defined] (120)
(-)
Pig (Sus scrofa) (3)
1a1gteA01A:2-26,A:934-1017
1b1gteC01C:2-26,C:934-1017
1c1gteB01B:2-26,B:934-1018
1d1gteD01D:2-26,D:934-1019
(-)
Architecture: 3-Layer(bba) Sandwich (528)
(-)
Topology: FAD/NAD(P)-binding domain (373)
(-)
Homologous Superfamily: [code=3.50.50.60, no name defined] (373)
(-)
Pig (Sus scrofa) (5)
2a1gteA03A:184-287,A:441-532
2b1gteB03B:184-287,B:441-532
2c1gteA04A:288-440
2d1gteB04B:288-440
2e1gteC04C:288-440
2f1gteD04D:288-440
2g1gteC03C:184-287,C:441-532
2h1gteD03D:184-287,D:441-532
(-)
Architecture: Alpha-Beta Barrel (2994)
(-)
Topology: TIM Barrel (2806)
(-)
Homologous Superfamily: Aldolase class I (887)
(-)
Pig (Sus scrofa) (3)
3a1gteB05B:533-844
3b1gteC05C:533-844
3c1gteA05A:533-844
3d1gteD05D:533-844
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1GTE)

(-) Gene Ontology  (17, 17)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (DPYD_PIG | Q28943)
molecular function
    GO:0051539    4 iron, 4 sulfur cluster binding    Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0010181    FMN binding    Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
    GO:0050661    NADP binding    Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0017113    dihydropyrimidine dehydrogenase (NADP+) activity    Catalysis of the reaction: 5,6-dihydrouracil + NADP+ = uracil + NADPH + H+.
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016627    oxidoreductase activity, acting on the CH-CH group of donors    Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
biological process
    GO:0019483    beta-alanine biosynthetic process    The chemical reactions and pathways resulting in the formation of beta-alanine (3-aminopropanoic acid), an achiral amino acid and an isomer of alanine. It occurs free (e.g. in brain) and in combination (e.g. in pantothenate) but it is not a constituent of proteins.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0006214    thymidine catabolic process    The chemical reactions and pathways resulting in the breakdown of thymidine, deoxyribosylthymine thymine 2-deoxyriboside, a deoxynucleoside very widely distributed but occurring almost entirely as phosphoric esters in deoxynucleotides and deoxyribonucleic acid, DNA.
    GO:0006212    uracil catabolic process    The chemical reactions and pathways resulting in the breakdown of uracil, 2,4-dioxopyrimidine, one of the pyrimidine bases occurring in RNA, but not in DNA.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  1gte
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  DPYD_PIG | Q28943
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  1.3.1.2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DPYD_PIG | Q28943: 1gt8 1gth 1h7w 1h7x

(-) Related Entries Specified in the PDB File

1gt8 DIHYDROPYRIMIDINE DEHYDROGENASE (DPD) FROM PIG, BINARY COMPLEX WITH NADPH AND URACIL-4-ACETIC ACID
1gth DIHYDROPYRIMIDINE DEHYDROGENASE (DPD) FROM PIG, BINARY COMPLEX WITH NADPH AND 5-IODOURACIL
1h7w DIHYDROPYRIMIDINE DEHYDROGENASE (DPD) FROM PIG
1h7x DIHYDROPYRIMIDINE DEHYDROGENASE (DPD) FROM PIG, TERNARY COMPLEX OF A MUTANT ENZYME (C671A), NADPH AND 5-FLUOROURACIL