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(-) Description

Title :  DIHYDROPYRIMIDINE DEHYDROGENASE (DPD) FROM PIG, TERNARY COMPLEX WITH NADPH AND URACIL-4-ACETIC ACID
 
Authors :  D. Dobritzsch, S. Ricagno, G. Schneider, K. D. Schnackerz, Y. Lindqvist
Date :  14 Jan 02  (Deposition) - 11 Apr 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.30
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Electron Transfer, Flavin, Iron-Sulfur Clusters, Pyrimidine Catabolism, 5-Fluorouracil Degradation, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Dobritzsch, S. Ricagno, G. Schneider, K. D. Schnackerz, Y. Lindqvist
Crystal Structure Of The Productive Ternary Complex Of Dihydropyrimidine Dehydrogenase With Nadph And 5-Iodouracil. Implications For Mechanism Of Inhibition And Electron Transfer
J. Biol. Chem. V. 277 13155 2002
PubMed-ID: 11796730  |  Reference-DOI: 10.1074/JBC.M111877200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DIHYDROPYRIMIDINE DEHYDROGENASE
    Chains: A, B, C, D
    EC Number: 1.3.1.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSE420
    Expression System Strain: DH5A
    Expression System Taxid: 562
    Organ: LIVER
    Organism Common: PIG
    Organism Scientific: SUS SCROFA
    Organism Taxid: 9823
    Synonym: DPD, DHPDHASE, DIHYDROURACIL DEHYDROGENASE, DIHYDROTHYMINE DEHYDROGENASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 32)

Asymmetric Unit (5, 32)
No.NameCountTypeFull Name
1FAD4Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2FMN4Ligand/IonFLAVIN MONONUCLEOTIDE
3NDP4Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
4SF416Ligand/IonIRON/SULFUR CLUSTER
5UAA4Ligand/IonURACIL-6-ACETIC ACID
Biological Unit 1 (5, 16)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2FMN2Ligand/IonFLAVIN MONONUCLEOTIDE
3NDP2Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
4SF48Ligand/IonIRON/SULFUR CLUSTER
5UAA2Ligand/IonURACIL-6-ACETIC ACID
Biological Unit 2 (5, 16)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2FMN2Ligand/IonFLAVIN MONONUCLEOTIDE
3NDP2Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
4SF48Ligand/IonIRON/SULFUR CLUSTER
5UAA2Ligand/IonURACIL-6-ACETIC ACID

(-) Sites  (32, 32)

Asymmetric Unit (32, 32)
No.NameEvidenceResiduesDescription
01AC1SOFTWARECYS A:91 , PRO A:92 , LEU A:95 , ILE A:97 , ASN A:120 , CYS A:130 , THR A:132 , LEU A:135 , CYS A:136 , GLN A:156BINDING SITE FOR RESIDUE SF4 A1026
02AC2SOFTWARECYS A:79 , LEU A:80 , LYS A:81 , CYS A:82 , PRO A:86 , CYS A:87 , CYS A:140 , ASN A:141 , ILE A:150 , ILE A:152BINDING SITE FOR RESIDUE SF4 A1027
03AC3SOFTWAREILE A:948 , CYS A:953 , ILE A:954 , ASN A:955 , CYS A:956 , GLY A:957 , LYS A:958 , CYS A:959 , CYS A:996 , PRO A:997 , CYS A:1001 , ILE A:1002BINDING SITE FOR RESIDUE SF4 A1028
04AC4SOFTWARECYS A:963 , TYR A:968 , ILE A:971 , VAL A:982 , CYS A:986 , THR A:987 , GLY A:988 , CYS A:989 , THR A:990 , CYS A:992BINDING SITE FOR RESIDUE SF4 A1029
05AC5SOFTWAREALA A:549 , SER A:550 , ALA A:551 , LYS A:574 , THR A:575 , ILE A:590 , ASN A:609 , GLU A:611 , ASN A:668 , LYS A:709 , THR A:737 , SER A:766 , GLY A:767 , THR A:793 , GLY A:794 , GLY A:795 , CYS A:816 , SER A:817 , GLN A:820 , UAA A:1035BINDING SITE FOR RESIDUE FMN A1030
06AC6SOFTWAREVAL A:129 , GLY A:194 , GLY A:196 , PRO A:197 , ALA A:198 , PHE A:217 , GLU A:218 , LYS A:219 , GLN A:220 , GLY A:225 , LEU A:226 , GLU A:230 , ILE A:231 , ARG A:235 , SER A:260 , LEU A:261 , ILE A:283 , LEU A:310 , THR A:343 , ASP A:346 , GLY A:480 , ASP A:481 , THR A:488 , THR A:489 , SER A:492 , NDP A:1032BINDING SITE FOR RESIDUE FAD A1031
07AC7SOFTWAREPRO A:131 , ALA A:340 , GLY A:341 , ASP A:342 , THR A:343 , ARG A:364 , LYS A:365 , ARG A:371 , ALA A:437 , PHE A:438 , GLY A:439 , ASN A:487 , FAD A:1031BINDING SITE FOR RESIDUE NDP A1032
08AC8SOFTWAREASN A:609 , GLU A:611 , LEU A:612 , ILE A:613 , ASN A:668 , SER A:670 , ASN A:736 , GLY A:764 , FMN A:1030BINDING SITE FOR RESIDUE UAA A1035
09AC9SOFTWARECYS B:91 , PRO B:92 , LEU B:95 , ILE B:97 , ASN B:120 , CYS B:130 , THR B:132 , CYS B:136 , GLN B:156BINDING SITE FOR RESIDUE SF4 B1026
10BC1SOFTWARECYS B:79 , LEU B:80 , LYS B:81 , CYS B:82 , PRO B:86 , CYS B:87 , CYS B:140 , ASN B:141 , LEU B:142 , ILE B:150 , ILE B:152BINDING SITE FOR RESIDUE SF4 B1027
11BC2SOFTWAREILE B:948 , CYS B:953 , ILE B:954 , CYS B:956 , GLY B:957 , LYS B:958 , CYS B:959 , CYS B:996 , PRO B:997 , CYS B:1001 , ILE B:1002BINDING SITE FOR RESIDUE SF4 B1028
12BC3SOFTWARECYS B:963 , TYR B:968 , ILE B:971 , VAL B:982 , CYS B:986 , THR B:987 , GLY B:988 , CYS B:989 , THR B:990 , CYS B:992BINDING SITE FOR RESIDUE SF4 B1029
13BC4SOFTWAREALA B:549 , SER B:550 , ALA B:551 , LYS B:574 , THR B:575 , ILE B:590 , ASN B:609 , ASN B:668 , LYS B:709 , THR B:735 , ASN B:736 , THR B:737 , SER B:766 , GLY B:767 , THR B:793 , GLY B:794 , GLY B:795 , CYS B:816 , SER B:817 , GLN B:820 , UAA B:1035BINDING SITE FOR RESIDUE FMN B1030
14BC5SOFTWAREVAL B:129 , GLY B:194 , GLY B:196 , PRO B:197 , ALA B:198 , PHE B:217 , GLU B:218 , LYS B:219 , GLN B:220 , GLY B:225 , LEU B:226 , GLU B:230 , ILE B:231 , ARG B:235 , LYS B:259 , SER B:260 , LEU B:261 , ILE B:283 , LEU B:310 , THR B:343 , ASP B:346 , GLY B:480 , ASP B:481 , THR B:488 , THR B:489 , SER B:492 , NDP B:1032BINDING SITE FOR RESIDUE FAD B1031
15BC6SOFTWAREPRO B:131 , ALA B:340 , GLY B:341 , ASP B:342 , THR B:343 , ARG B:364 , LYS B:365 , ARG B:371 , PRO B:393 , ALA B:437 , PHE B:438 , GLY B:439 , ASN B:487 , FAD B:1031BINDING SITE FOR RESIDUE NDP B1032
16BC7SOFTWAREASN B:609 , GLU B:611 , ILE B:613 , ASN B:668 , SER B:670 , ASN B:736 , THR B:737 , GLY B:764 , FMN B:1030BINDING SITE FOR RESIDUE UAA B1035
17BC8SOFTWARECYS C:91 , PRO C:92 , LEU C:95 , ILE C:97 , CYS C:130 , THR C:132 , LEU C:135 , CYS C:136 , GLN C:156BINDING SITE FOR RESIDUE SF4 C1026
18BC9SOFTWARECYS C:79 , LEU C:80 , LYS C:81 , CYS C:82 , CYS C:87 , CYS C:140 , ASN C:141 , ILE C:150 , ILE C:152BINDING SITE FOR RESIDUE SF4 C1027
19CC1SOFTWAREILE C:948 , CYS C:953 , ILE C:954 , CYS C:956 , GLY C:957 , LYS C:958 , CYS C:959 , CYS C:996 , PRO C:997 , CYS C:1001 , ILE C:1002BINDING SITE FOR RESIDUE SF4 C1028
20CC2SOFTWARECYS C:963 , TYR C:968 , ILE C:971 , VAL C:982 , CYS C:986 , THR C:987 , GLY C:988 , CYS C:989 , THR C:990 , CYS C:992BINDING SITE FOR RESIDUE SF4 C1029
21CC3SOFTWAREALA C:549 , SER C:550 , ALA C:551 , LYS C:574 , THR C:575 , ILE C:590 , ASN C:609 , ASN C:668 , LYS C:709 , ASN C:736 , SER C:766 , GLY C:767 , THR C:793 , GLY C:794 , GLY C:795 , CYS C:816 , SER C:817 , GLN C:820 , UAA C:1035BINDING SITE FOR RESIDUE FMN C1030
22CC4SOFTWAREVAL C:129 , GLY C:194 , GLY C:196 , PRO C:197 , ALA C:198 , PHE C:217 , GLU C:218 , LYS C:219 , GLN C:220 , GLY C:225 , LEU C:226 , GLU C:230 , ILE C:231 , ARG C:235 , SER C:260 , LEU C:261 , GLY C:282 , ILE C:283 , LEU C:310 , THR C:343 , ASP C:346 , GLY C:480 , ASP C:481 , THR C:488 , THR C:489 , SER C:492 , NDP C:1032BINDING SITE FOR RESIDUE FAD C1031
23CC5SOFTWAREPRO C:131 , ALA C:340 , GLY C:341 , ASP C:342 , THR C:343 , ARG C:364 , LYS C:365 , ARG C:371 , ALA C:437 , PHE C:438 , GLY C:439 , ASN C:487 , THR C:488 , FAD C:1031BINDING SITE FOR RESIDUE NDP C1032
24CC6SOFTWAREASN C:609 , GLU C:611 , LEU C:612 , ILE C:613 , ASN C:668 , SER C:670 , ASN C:736 , THR C:737 , GLY C:764 , FMN C:1030BINDING SITE FOR RESIDUE UAA C1035
25CC7SOFTWARECYS D:91 , PRO D:92 , LEU D:95 , ILE D:97 , ASN D:120 , CYS D:130 , THR D:132 , CYS D:136 , GLN D:156BINDING SITE FOR RESIDUE SF4 D1026
26CC8SOFTWARECYS D:79 , LEU D:80 , LYS D:81 , CYS D:82 , PRO D:86 , CYS D:87 , CYS D:140 , ASN D:141 , LEU D:142 , ILE D:150 , ILE D:152BINDING SITE FOR RESIDUE SF4 D1027
27CC9SOFTWAREILE D:948 , CYS D:953 , ILE D:954 , CYS D:956 , GLY D:957 , LYS D:958 , CYS D:959 , CYS D:996 , PRO D:997 , CYS D:1001 , ILE D:1002BINDING SITE FOR RESIDUE SF4 D1028
28DC1SOFTWARECYS D:963 , TYR D:968 , ILE D:971 , VAL D:982 , CYS D:986 , THR D:987 , GLY D:988 , CYS D:989 , THR D:990 , CYS D:992BINDING SITE FOR RESIDUE SF4 D1029
29DC2SOFTWAREALA D:549 , SER D:550 , ALA D:551 , LYS D:574 , THR D:575 , ILE D:590 , ASN D:609 , ASN D:668 , LYS D:709 , THR D:735 , THR D:737 , SER D:766 , GLY D:767 , THR D:793 , GLY D:794 , GLY D:795 , CYS D:816 , SER D:817 , GLN D:820 , UAA D:1035BINDING SITE FOR RESIDUE FMN D1030
30DC3SOFTWAREVAL D:129 , GLY D:194 , GLY D:196 , PRO D:197 , ALA D:198 , PHE D:217 , GLU D:218 , LYS D:219 , GLN D:220 , GLY D:225 , LEU D:226 , GLU D:230 , ILE D:231 , ARG D:235 , LYS D:259 , SER D:260 , LEU D:261 , ILE D:283 , LEU D:310 , THR D:343 , ASP D:346 , GLY D:480 , ASP D:481 , THR D:488 , THR D:489 , SER D:492 , NDP D:1032BINDING SITE FOR RESIDUE FAD D1031
31DC4SOFTWAREPRO D:131 , ALA D:340 , GLY D:341 , ASP D:342 , THR D:343 , ARG D:364 , LYS D:365 , ARG D:371 , PRO D:393 , ALA D:437 , PHE D:438 , GLY D:439 , ASN D:487 , THR D:488 , FAD D:1031BINDING SITE FOR RESIDUE NDP D1032
32DC5SOFTWAREASN D:609 , GLU D:611 , ILE D:613 , ASN D:668 , ASN D:736 , THR D:737 , FMN D:1030BINDING SITE FOR RESIDUE UAA D1035

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1GT8)

(-) Cis Peptide Bonds  (16, 16)

Asymmetric Unit
No.Residues
1Ser A:452 -Pro A:453
2Ser A:587 -Pro A:588
3Ala A:734 -Thr A:735
4Trp A:751 -Pro A:752
5Ser B:452 -Pro B:453
6Ser B:587 -Pro B:588
7Ala B:734 -Thr B:735
8Trp B:751 -Pro B:752
9Ser C:452 -Pro C:453
10Ser C:587 -Pro C:588
11Ala C:734 -Thr C:735
12Trp C:751 -Pro C:752
13Ser D:452 -Pro D:453
14Ser D:587 -Pro D:588
15Ala D:734 -Thr D:735
16Trp D:751 -Pro D:752

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1GT8)

(-) PROSITE Motifs  (2, 16)

Asymmetric Unit (2, 16)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
14FE4S_FER_2PS51379 4Fe-4S ferredoxin-type iron-sulfur binding domain profile.DPYD_PIG69-100
 
 
 
944-976
 
 
 
978-1007
 
 
 		  12A:69-100
B:69-100
C:69-100
D:69-100
A:944-976
B:944-976
C:944-976
D:944-976
A:978-1007
B:978-1007
C:978-1007
D:978-1007
24FE4S_FER_1PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature.DPYD_PIG986-997
 
 
 		  4A:986-997
B:986-997
C:986-997
D:986-997
Biological Unit 1 (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
14FE4S_FER_2PS51379 4Fe-4S ferredoxin-type iron-sulfur binding domain profile.DPYD_PIG69-100
 
 
 
944-976
 
 
 
978-1007
 
 
 		  6A:69-100
B:69-100
-
-
A:944-976
B:944-976
-
-
A:978-1007
B:978-1007
-
-
24FE4S_FER_1PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature.DPYD_PIG986-997
 
 
 		  2A:986-997
B:986-997
-
-
Biological Unit 2 (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
14FE4S_FER_2PS51379 4Fe-4S ferredoxin-type iron-sulfur binding domain profile.DPYD_PIG69-100
 
 
 
944-976
 
 
 
978-1007
 
 
 		  6-
-
C:69-100
D:69-100
-
-
C:944-976
D:944-976
-
-
C:978-1007
D:978-1007
24FE4S_FER_1PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature.DPYD_PIG986-997
 
 
 		  2-
-
C:986-997
D:986-997

(-) Exons   (0, 0)

(no "Exon" information available for 1GT8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:1017
 aligned with DPYD_PIG | Q28943 from UniProtKB/Swiss-Prot  Length:1025

    Alignment length:1019
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961       971       981       991      1001      1011         
            DPYD_PIG      2 APVLSKDVADIESILALNPRTQSHAALHSTLAKKLDKKHWKRNPDKNCFHCEKLENNFGDIKHTTLGERGALREAMRCLKCADAPCQKSCPTHLDIKSFITSISNKNYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTPVDLVDISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKSIEELQGWDGQSPGTESHQKGKPVPRIAELMGKKLPNFGPYLEQRKKIIAEEKMRLKEQNAAFPPLERKPFIPKKPIPAIKDVIGKALQYLGTFGELSNIEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCTLCLSVCPIIDCIRMVSRTTPYEPKRGLPLA 1020
               SCOP domains d1gt8a1 A:2-183 Dihydropyrimidine dehydrogenase, N-terminal domain                                                                                                                    d1gt8a4 A:184-287,A:441-532 Dihydropyrimidine dehydrogenase, domain 2                                   d1gt8a3 A:288-440 Dihydropyrimidine dehydrogenase, domain 3                                                                                              d1gt8a4 A:184-287,A:441-532 Dihydropyrimidine dehydrogenase, domain 2                       d1gt8a2 A:533-844 Dihydropyrimidine dehydrogenase, domain 4                                                                                                                                                                                                                                                             d1gt8a5 A:845-1020 Dihydropyrimidine dehydrogenase, C-terminal domain                                                                                                            SCOP domains
               CATH domains 1gt8A01 A:2-26,A:934-10201gt8A02 A:27-183 Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2                                                                                   1gt8A03 A:184-287,A:441-532  [code=3.50.50.60, no name defined]                                         1gt8A04 A:288-440  [code=3.50.50.60, no name defined]                                                                                                    1gt8A03 A:184-287,A:441-532  [code=3.50.50.60, no name defined]                             1gt8A05 A:533-844 Aldolase class I                                                                                                                                                                                                                                                                                      -----------------------------------------------------------------------------------------1gt8A01 A:2-26,A:934-1020  [code=3.30.70.20, no name defined]                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhh.............hhhhhhhhhh............................hhhhhhhhhhhh.....hhhhhh.....hhhhhhhhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh..........hhhhhhhhhhh.eeee..hhhhhhhhhhhhhhh...eeeee......hhhhhh......hhhhhhhhhhhhhh...eeee.........hhhhhhhhh..eeee.....ee..hhhhh.......eeehhhhhhhhhhhhh...............eeeee..hhhhhhhhhhhhhh...eeeee...hhhhh..hhhhhhhhhhh..eee..eeeeeeee....eeeeeeeeeee.....eeeeeeeeeeee..eeee...ee..hhhhhhhh........................eee.hhhhh...hhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhh...eee..eee...eee..hhhhhhhhhhhhhhhhh..eee.....hhhhh.......eee..............eee.......hhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhh...eeeee.........--....hhhhhhhhhhhhhhhhhhh...eeee......hhhhhhhhhhhh....eee...eee......................eeeehhhhhhhhhhhhhhhhhhh....eeee....hhhhhhhhhh....eeeehhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...........ee..ee..............hhhhhhhhhhhhhhhhhhhhh....................hhhhhh..hhhh............eeeee........hhhhhhhhhhh...eee......eee.......hhhhhhh.....eeeee.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------------------------------------------------------------4FE4S_FER_2  PDB: A:69-100      ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------4FE4S_FER_2  PDB: A:944-976      -4FE4S_FER_2  PDB: A:978-1007  ------------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------4FE4S_FER_1 ----------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1gt8 A    2 APVLSKDVADIESILALNPRTQSHAALHSTLAKKLDKKHWKRNPDKNCFHCEKLENNFDDIKHTTLGERGALREAMRCLKCADAPCQKSCPTHLDIKSFITSISNKNYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTPVDLVDISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGE--MGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKSIEELQGWDGQSPGTESHQKGKPVPRIAELMGKKLPNFGPYLEQRKKIIAEEKMRLKEQNAAFPPLERKPFIPKKPIPAIKDVIGKALQYLGTFGELSNIEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCTLCLSVCPIIDCIRMVSRTTPYEPKRGLPLA 1020
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671     | 681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961       971       981       991      1001      1011         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             677  |                                                                                                                                                                                                                                                                                                                                                    
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                680                                                                                                                                                                                                                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:1010
 aligned with DPYD_PIG | Q28943 from UniProtKB/Swiss-Prot  Length:1025

    Alignment length:1019
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961       971       981       991      1001      1011         
            DPYD_PIG      2 APVLSKDVADIESILALNPRTQSHAALHSTLAKKLDKKHWKRNPDKNCFHCEKLENNFGDIKHTTLGERGALREAMRCLKCADAPCQKSCPTHLDIKSFITSISNKNYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTPVDLVDISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKSIEELQGWDGQSPGTESHQKGKPVPRIAELMGKKLPNFGPYLEQRKKIIAEEKMRLKEQNAAFPPLERKPFIPKKPIPAIKDVIGKALQYLGTFGELSNIEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCTLCLSVCPIIDCIRMVSRTTPYEPKRGLPLA 1020
               SCOP domains d1gt8b1 B:2-183 Dihydropyrimidine dehydrogenase, N-terminal domain                                                                                                                    d1gt8b4 B:184-287,B:441-532 Dihydropyrimidine dehydrogenase, domain 2                                   d1gt8b3 B:288-440 Dihydropyrimidine dehydrogenase, domain 3                                                                                              d1gt8b4 B:184-287,B:441-532 Dihydropyrimidine dehydrogenase, domain 2                       d1gt8b2 B:533-844 Dihydropyrimidine dehydrogenase, domain 4                                                                                                                                                                                                                                                             d1gt8b5 B:845-1020 Dihydropyrimidine dehydrogenase, C-te      rminal domain                                                                                                      SCOP domains
               CATH domains 1gt8B01 B:2-26,B:934-10201gt8B02 B:27-183 Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2                                                                                   1gt8B03 B:184-287,B:441-532  [code=3.50.50.60, no name defined]                                         1gt8B04 B:288-440  [code=3.50.50.60, no name defined]                                                                                                    1gt8B03 B:184-287,B:441-532  [code=3.50.50.60, no name defined]                             1gt8B05 B:533-844 Aldolase class I                                                                                                                                                                                                                                                                                      --------------------------------------------------------      ---------------------------1gt8B01 B:2-26,B:934-1020  [code=3.30.70.20, no name defined]                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhh.............hhhhhhhhhhhhh.........................hhhhhhhhhhhh.....hhhhhh.....hhhhhhhhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh..........hhhhhhhhhh.eeeee..hhhhhhhhhhhhhhh..eeeeee......hhhhhh......hhhhhhhhhhhhhh...eeee.........hhhhhhhhheeeeee.....ee..hhhhh.......eeehhhhhhhhhhhhh...............eeeee..hhhhhhhhhhhhhh...eeeee...hhhhh..hhhhhhhhhhh..eee..eeeeeeee....eeeeeeeeeee.....eeeeeeeeeeee..eeee...ee..hhhhhhhh........................eee.hhhhh...hhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhh...eee..eee...eee..hhhhhhhhhhhhhhhhh..eee.....hhhhh.......eee..............eee.......hhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhh...eeeee........---....hhhhhhhhhhhhhhhhhhh...eeee......hhhhhhhhhhhh...eeee...eee......................eeeehhhhhhhhhhhhhhhhhhh....eeee....hhhhhhhhhhh...eeeehhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...........ee..ee..............hhhhhhhhhhhhhhhhhhhhhh------.............hhhhhh..hhhh............eeeee........hhhhhhhhhhh...eee......eee.......hhhhhhh.....eeeee.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------------------------------------------------------------4FE4S_FER_2  PDB: B:69-100      ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------4FE4S_FER_2  PDB: B:944-976      -4FE4S_FER_2  PDB: B:978-1007  ------------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------4FE4S_FER_1 ----------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1gt8 B    2 APVLSKDVADIESILALNPRTQSHAALHSTLAKKLDKKHWKRNPDKNCFHCEKLENNFDDIKHTTLGERGALREAMRCLKCADAPCQKSCPTHLDIKSFITSISNKNYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTPVDLVDISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMG---MGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKSIEELQGWDGQSPGTESHQKGKPVPRIAELMGKKLPNFGPYLEQRKKIIAEEKMRLKEQ------LERKPFIPKKPIPAIKDVIGKALQYLGTFGELSNIEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCTLCLSVCPIIDCIRMVSRTTPYEPKRGLPLA 1020
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671    |  681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891        |-     | 911       921       931       941       951       961       971       981       991      1001      1011         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            676 680                                                                                                                                                                                                                         900    907                                                                                                                 


Chain C from PDB  Type:PROTEIN  Length:1010
 aligned with DPYD_PIG | Q28943 from UniProtKB/Swiss-Prot  Length:1025

    Alignment length:1019
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961       971       981       991      1001      1011         
            DPYD_PIG      2 APVLSKDVADIESILALNPRTQSHAALHSTLAKKLDKKHWKRNPDKNCFHCEKLENNFGDIKHTTLGERGALREAMRCLKCADAPCQKSCPTHLDIKSFITSISNKNYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTPVDLVDISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKSIEELQGWDGQSPGTESHQKGKPVPRIAELMGKKLPNFGPYLEQRKKIIAEEKMRLKEQNAAFPPLERKPFIPKKPIPAIKDVIGKALQYLGTFGELSNIEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCTLCLSVCPIIDCIRMVSRTTPYEPKRGLPLA 1020
               SCOP domains d1gt8c1 C:2-183 Dihydropyrimidine dehydrogenase, N-terminal domain                                                                                                                    d1gt8c4 C:184-287,C:441-532 Dihydropyrimidine dehydrogenase, domain 2                                   d1gt8c3 C:288-440 Dihydropyrimidine dehydrogenase, domain 3                                                                                              d1gt8c4 C:184-287,C:441-532 Dihydropyrimidine dehydrogenase, domain 2                       d1gt8c2 C:533-844 Dihydropyrimidine dehydrogenase, domain 4                                                                                                                                                                                                                                                             d1gt8c5 C:845-1020 Dihydropyrimidine dehydrogenase, C-terminal domain                                                                                                            SCOP domains
               CATH domains 1gt8C01 C:2-26,C:934-10201gt8C02 C:27-183 Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2                                                                                   1gt8C03 C:184-287,C:441-532  [code=3.50.50.60, no name defined]                                         1gt8C04 C:288-440  [code=3.50.50.60, no name defined]                                                                                                    1gt8C03 C:184-287,C:441-532  [code=3.50.50.60, no name defined]                             1gt8C05 C:533-844 Aldolase class I                                                                                                                                                                                                                                                                                      -----------------------------------------------------------------------------------------1gt8C01 C:2-26,C:934-1020  [code=3.30.70.20, no name defined]                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhh.............hhhhhhhhhh............................hhhhhhhhhhhh.....hhhhhh.....hhhhhhhhhhh.hhhhhhhhhhhhh.hhhhhhhhh.....hhhhhhhhhh.....hhhhhhhhhhhhhhhhh..........hhhhh.hhhh.eeeee..hhhhhhhhhhhhhhh..eeeeee......hhhhhh......hhhhhhhhhhhhhh...eeee.........hhhhhhhhh..eeee.....ee..hhhhh..hhhh.eeehhhhhhhhhhhhh...............eeeee..hhhhhhhhhhhhhh...eeeee...hhhhh..hhhhhhhhhhh..eee..eeeeeeeee..eeeeeeeeeeee.....eeeeeeeeeeee..eeee...ee..hhhhhhhh........................eee.hhhhh...hhhhhhhhhhhhhhhhhhhhhhh...............hhhhhh...eee..eee...eee..hhhhhhhhhhhhhhhhh..eee.....hhhhh.......eee..............eee.......hhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhh...eeeee....---------.hhhhhhhhhhhhhhhhhhhh...eeee......hhhhhhhhhhhh....eee...eee......................eeeehhhhhhhhhhhhhhhhhhh....eeee....hhhhhhhhhhh...eeeehhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...........ee..ee..............hhhhhhhhhhhhhhhhhhhhhhh..................hhhhhh..hhhh............eeeee........hhhhhhhhhhh...eee......eee.......hhhhhhh.....eeeee.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------------------------------------------------------------4FE4S_FER_2  PDB: C:69-100      ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------4FE4S_FER_2  PDB: C:944-976      -4FE4S_FER_2  PDB: C:978-1007  ------------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------4FE4S_FER_1 ----------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1gt8 C    2 APVLSKDVADIESILALNPRTQSHAALHSTLAKKLDKKHWKRNPDKNCFHCEKLENNFDDIKHTTLGERGALREAMRCLKCADAPCQKSCPTHLDIKSFITSISNKNYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTPVDLVDISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCP---------LACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKSIEELQGWDGQSPGTESHQKGKPVPRIAELMGKKLPNFGPYLEQRKKIIAEEKMRLKEQNAAFPPLERKPFIPKKPIPAIKDVIGKALQYLGTFGELSNIEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCTLCLSVCPIIDCIRMVSRTTPYEPKRGLPLA 1020
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671|        -|      691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961       971       981       991      1001      1011         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        672       682                                                                                                                                                                                                                                                                                                                                                  


Chain D from PDB  Type:PROTEIN  Length:1012
 aligned with DPYD_PIG | Q28943 from UniProtKB/Swiss-Prot  Length:1025

    Alignment length:1019
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961       971       981       991      1001      1011         
            DPYD_PIG      2 APVLSKDVADIESILALNPRTQSHAALHSTLAKKLDKKHWKRNPDKNCFHCEKLENNFGDIKHTTLGERGALREAMRCLKCADAPCQKSCPTHLDIKSFITSISNKNYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTPVDLVDISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKSIEELQGWDGQSPGTESHQKGKPVPRIAELMGKKLPNFGPYLEQRKKIIAEEKMRLKEQNAAFPPLERKPFIPKKPIPAIKDVIGKALQYLGTFGELSNIEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCTLCLSVCPIIDCIRMVSRTTPYEPKRGLPLA 1020
               SCOP domains d1gt8d1 D:2-183 Dihydropyrimidine dehydrogenase, N-terminal domain                                                                                                                    d1gt8d4 D:184-287,D:441-532 Dihydropyrimidine dehydrogenase, domain 2                                   d1gt8d3 D:288-440 Dihydropyrimidine dehydrogenase, domain 3                                                                                              d1gt8d4 D:184-287,D:441-532 Dihydropyrimidine dehydrogenase, domain 2                       d1gt8d2 D:533-844 Dihydropyrimidine dehydrogenase, domain 4                                                                                                                                                                                                                                                             d1gt8d5 D:845-1020 Dihydropyrimidine dehydrogenase, C-ter    minal domain                                                                                                        SCOP domains
               CATH domains 1gt8D01 D:2-26,D:934-10201gt8D02 D:27-183 Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2                                                                                   1gt8D03 D:184-287,D:441-532  [code=3.50.50.60, no name defined]                                         1gt8D04 D:288-440  [code=3.50.50.60, no name defined]                                                                                                    1gt8D03 D:184-287,D:441-532  [code=3.50.50.60, no name defined]                             1gt8D05 D:533-844 Aldolase class I                                                                                                                                                                                                                                                                                      ---------------------------------------------------------    ----------------------------1gt8D01 D:2-26,D:934-1020  [code=3.30.70.20, no name defined]                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhh.............hhhhhhhhhhhhh.........................hhhhhhhhhhhh.....hhhhhh.....hhhhhhhhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh...........hhhhhhhhhh.eeeee..hhhhhhhhhhhhhhh..eeeeee......hhhhhh......hhhhhhhhhhhhhh...eeee.........hhhhhhhhheeeeee.....ee..hhhhh.......eeehhhhhhhhhhhhh...............eeeee..hhhhhhhhhhhhhh...eeeee...hhhhh..hhhhhhhhhhh..eee..eeeeeeee....eeeeeeeeeee.....eeeeeeeeeee...eeee...ee..hhhhhhhh........................eee.hhhhh...hhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhh...eee..eee...eee..hhhhhhhhhhhhhhhhh..eee.....hhhhh.......eee..............eee.......hhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhh...eeeee........---....hhhhhhhhhhhhhhhhhhh...eeee......hhhhhhhhhhhh....eee...eee......................eeeehhhhhhhhhhhhhhhhhhh....eeee....hhhhhhhhhhh...eeeehhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...........ee..ee...hhhhh......hhhhhhhhhhhhhhhhhhhhhhh----..............hhhhhhhhhhhh............eeeee........hhhhhhhhhh....eee......eee.......hhhhhhh.....eeeee.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------------------------------------------------------------4FE4S_FER_2  PDB: D:69-100      ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------4FE4S_FER_2  PDB: D:944-976      -4FE4S_FER_2  PDB: D:978-1007  ------------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------4FE4S_FER_1 ----------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1gt8 D    2 APVLSKDVADIESILALNPRTQSHAALHSTLAKKLDKKHWKRNPDKNCFHCEKLENNFDDIKHTTLGERGALREAMRCLKCADAPCQKSCPTHLDIKSFITSISNKNYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTPVDLVDISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMG---MGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKSIEELQGWDGQSPGTESHQKGKPVPRIAELMGKKLPNFGPYLEQRKKIIAEEKMRLKEQN----PLERKPFIPKKPIPAIKDVIGKALQYLGTFGELSNIEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCTLCLSVCPIIDCIRMVSRTTPYEPKRGLPLA 1020
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671    |  681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901    |  911       921       931       941       951       961       971       981       991      1001      1011         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            676 680                                                                                                                                                                                                                          901  906
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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 Classification and Annotation

(-) SCOP Domains  (5, 20)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (4, 20)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 2-Layer Sandwich (8480)
(-)
Topology: Alpha-Beta Plaits (1688)
(-)
Homologous Superfamily: [code=3.30.70.20, no name defined] (120)
(-)
Pig (Sus scrofa) (3)
1a1gt8A01A:2-26,A:934-1020
1b1gt8C01C:2-26,C:934-1020
1c1gt8D01D:2-26,D:934-1020
1d1gt8B01B:2-26,B:934-1020
(-)
Architecture: 3-Layer(bba) Sandwich (528)
(-)
Topology: FAD/NAD(P)-binding domain (373)
(-)
Homologous Superfamily: [code=3.50.50.60, no name defined] (373)
(-)
Pig (Sus scrofa) (5)
2a1gt8A03A:184-287,A:441-532
2b1gt8C03C:184-287,C:441-532
2c1gt8D03D:184-287,D:441-532
2d1gt8A04A:288-440
2e1gt8B04B:288-440
2f1gt8C04C:288-440
2g1gt8D04D:288-440
2h1gt8B03B:184-287,B:441-532
(-)
Architecture: Alpha-Beta Barrel (2994)
(-)
Topology: TIM Barrel (2806)
(-)
Homologous Superfamily: Aldolase class I (887)
(-)
Pig (Sus scrofa) (3)
3a1gt8C05C:533-844
3b1gt8D05D:533-844
3c1gt8A05A:533-844
3d1gt8B05B:533-844
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1GT8)

(-) Gene Ontology  (17, 17)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (DPYD_PIG | Q28943)
molecular function
    GO:0051539    4 iron, 4 sulfur cluster binding    Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0010181    FMN binding    Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
    GO:0050661    NADP binding    Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0017113    dihydropyrimidine dehydrogenase (NADP+) activity    Catalysis of the reaction: 5,6-dihydrouracil + NADP+ = uracil + NADPH + H+.
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016627    oxidoreductase activity, acting on the CH-CH group of donors    Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
biological process
    GO:0019483    beta-alanine biosynthetic process    The chemical reactions and pathways resulting in the formation of beta-alanine (3-aminopropanoic acid), an achiral amino acid and an isomer of alanine. It occurs free (e.g. in brain) and in combination (e.g. in pantothenate) but it is not a constituent of proteins.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0006214    thymidine catabolic process    The chemical reactions and pathways resulting in the breakdown of thymidine, deoxyribosylthymine thymine 2-deoxyriboside, a deoxynucleoside very widely distributed but occurring almost entirely as phosphoric esters in deoxynucleotides and deoxyribonucleic acid, DNA.
    GO:0006212    uracil catabolic process    The chemical reactions and pathways resulting in the breakdown of uracil, 2,4-dioxopyrimidine, one of the pyrimidine bases occurring in RNA, but not in DNA.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  1gt8
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  DPYD_PIG | Q28943
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  1.3.1.2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DPYD_PIG | Q28943: 1gte 1gth 1h7w 1h7x

(-) Related Entries Specified in the PDB File

1gte DIHYDROPYRIMIDINE DEHYDROGENASE (DPD) FROM PIG, BINARY COMPLEX WITH 5-IODOURACIL
1gth DIHYDROPYRIMIDINE DEHYDROGENASE (DPD) FROM PIG, BINARY COMPLEX WITH NADPH AND 5-IODOURACIL
1h7w DIHYDROPYRIMIDINE DEHYDROGENASE (DPD) FROM PIG
1h7x DIHYDROPYRIMIDINE DEHYDROGENASE (DPD) FROM PIG, TERNARY COMPLEX OF A MUTANT ENZYME (C671A), NADPH AND 5-FLUOROURACIL