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(-) Description

Title :  NMR STRUCTURE OF ASYMMETRIC HOMODIMER OF A82846B, A GLYCOPEPTIDE ANTIBIOTIC, COMPLEXED WITH ITS CELL WALL PENTAPEPTIDE FRAGMENT
 
Authors :  A. D. Kline, W. G. Prowse, M. A. Skelton, R. J. Loncharich
Date :  24 May 95  (Deposition) - 17 Aug 96  (Release) - 27 Jul 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B,C,D  (80x)
NMR Structure *:  A,B,C,D  (1x)
Keywords :  Peptide-Antibiotic Complex, Cell Wall Peptide, Glycopeptide, Antibiotic, Vancomycin Peptide-Antibiotic Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. G. Prowse, A. D. Kline, M. A. Skelton, R. J. Loncharich
Conformation Of A82846B, A Glycopeptide Antibiotic, Complexed With Its Cell Wall Fragment: An Asymmetric Homodimer Determined Using Nmr Spectroscopy.
Biochemistry V. 34 9632 1995
PubMed-ID: 7626632  |  Reference-DOI: 10.1021/BI00029A041

(-) Compounds

Molecule 1 - CELL WALL PENTAPEPTIDE
    Chains: A, B
    Engineered: YES
    Organism Scientific: AMYCOLATOPSIS ORIENTALIS
    Organism Taxid: 31958
    Synthetic: YES
 
Molecule 2 - CHLOROORIENTICIN A
    Chains: C, D
    Engineered: YES
    Organism Scientific: AMYCOLATOPSIS ORIENTALIS
    Organism Taxid: 31958
    Synonym: A82846B, A82846 FACTOR B, CHLOROEREMOMYCIN
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
NMR Structure (80x): ABCD
NMR Structure * (1x): ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (9, 24)

NMR Structure (9, 24)
No.NameCountTypeFull Name
13FG2Mod. Amino Acid(2S)-AMINO(3,5-DIHYDROXYPHENYL)ETHANOIC ACID
2BGC2Ligand/IonBETA-D-GLUCOSE
3DAL4Mod. Amino AcidD-ALANINE
4FGA2Mod. Amino AcidGAMMA-D-GLUTAMIC ACID
5GHP4Mod. Amino Acid(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
6MLU2Mod. Amino AcidN-METHYLLEUCINE
7OMY2Mod. Amino Acid(BETAR)-3-CHLORO-BETA-HYDROXY-L-TYROSINE
8OMZ2Mod. Amino Acid(BETAR)-3-CHLORO-BETA-HYDROXY-D-TYROSINE
9RER4Ligand/Ion(1R,3S,4S,5S)-3-AMINO-2,3,6-TRIDEOXY-3-METHYL-ALPHA-L-ARABINO-HEXOPYRANOSE
NMR Structure * (9, 24)
No.NameCountTypeFull Name
13FG2Mod. Amino Acid(2S)-AMINO(3,5-DIHYDROXYPHENYL)ETHANOIC ACID
2BGC2Ligand/IonBETA-D-GLUCOSE
3DAL4Mod. Amino AcidD-ALANINE
4FGA2Mod. Amino AcidGAMMA-D-GLUTAMIC ACID
5GHP4Mod. Amino Acid(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
6MLU2Mod. Amino AcidN-METHYLLEUCINE
7OMY2Mod. Amino Acid(BETAR)-3-CHLORO-BETA-HYDROXY-L-TYROSINE
8OMZ2Mod. Amino Acid(BETAR)-3-CHLORO-BETA-HYDROXY-D-TYROSINE
9RER4Ligand/Ion(1R,3S,4S,5S)-3-AMINO-2,3,6-TRIDEOXY-3-METHYL-ALPHA-L-ARABINO-HEXOPYRANOSE

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:1 , FGA A:2 , LYS A:3 , DAL A:4 , DAL A:5 , ALA B:1 , FGA B:2 , OMZ D:2 , ASN D:3 , GHP D:4 , GHP D:5 , OMY D:6 , RER D:9 , RER D:10BINDING SITE FOR CHAIN A OF CHLOROORIENTICIN A
2AC2SOFTWAREFGA A:2 , FGA B:2 , LYS B:3 , DAL B:4 , DAL B:5 , OMZ C:2 , ASN C:3 , GHP C:4 , GHP C:5 , OMY C:6 , BGC C:8 , RER C:9 , RER C:10BINDING SITE FOR CHAIN D OF CHLOROORIENTICIN A

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1GAC)

(-) Cis Peptide Bonds  (2, 160)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80Ghp C:5 -Omy C:6
21, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80Ghp D:5 -Omy D:6

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1GAC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1GAC)

(-) Exons   (0, 0)

(no "Exon" information available for 1GAC)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:5
                                   
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ...ee Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                   1gac A 1 AxKxx 5
                             | ||
                             | ||
                             2-FGA
                               4-DAL
                                5-DAL


Chain B from PDB  Type:PROTEIN  Length:5
                                   
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                   1gac B 1 AxKxx 5
                             | ||
                             | ||
                             2-FGA
                               4-DAL
                                5-DAL


Chain C from PDB  Type:PROTEIN  Length:7
                                     
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ...ee.. Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                   1gac C 1 xxNxxxx 7
                            || ||||
                            || ||||
                            1-MLU||
                             2-OMZ|
                               4-GHP
                                5-GHP
                                 6-OMY
                                  7-3FG


Chain D from PDB  Type:PROTEIN  Length:7
                                     
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                   1gac D 1 xxNxxxx 7
                            || ||||
                            || ||||
                            1-MLU||
                             2-OMZ|
                               4-GHP
                                5-GHP
                                 6-OMY
                                  7-3FG
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1GAC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1GAC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1GAC)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
    (no "Gene Ontology" information available for 1GAC)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

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1fvm CRYSTAL STRUCTURE OF VANCOMYCIN COMPLEXED WITH DI-ACETYL- LYS-D-ALA-D-ALA
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1qd8 CRYSTAL STRUCTURE OF VANCOMYCIN COMPLEXED WITH N-ACETYL GLYCIN
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